Wall clock time and date at job start Wed Apr 1 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00211 * 2 1 4 4 C 1.38217 * 119.99934 * 179.97438 * 3 2 1 5 5 C 1.38254 * 120.00117 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99736 * 359.97438 * 5 4 3 7 7 C 1.38220 * 119.99730 * 180.17203 * 2 1 3 8 8 C 1.50697 * 119.99997 * 0.06541 * 7 2 1 9 9 H 1.09006 * 109.47286 * 325.20669 * 8 7 2 10 10 C 1.53000 * 109.47423 * 85.21210 * 8 7 2 11 11 N 1.46507 * 109.46993 * 205.21316 * 8 7 2 12 12 C 1.34771 * 120.00225 * 154.99680 * 11 8 7 13 13 O 1.21347 * 120.00062 * 0.02562 * 12 11 8 14 14 C 1.49450 * 120.00135 * 179.97438 * 12 11 8 15 15 O 1.21349 * 119.99732 * 6.40231 * 14 12 11 16 16 N 1.34773 * 119.99955 * 186.40115 * 14 12 11 17 17 C 1.46916 * 120.63390 * 7.08797 * 16 14 12 18 18 C 1.53190 * 108.77660 * 233.58678 * 17 16 14 19 19 C 1.53044 * 109.31131 * 305.36007 * 18 17 16 20 20 C 1.53038 * 109.53520 * 61.36769 * 19 18 17 21 21 H 1.09004 * 109.49924 * 58.58815 * 20 19 18 22 22 C 1.50704 * 109.49918 * 178.67996 * 20 19 18 23 23 H 1.08001 * 119.99519 * 359.97438 * 22 20 19 24 24 C 1.37875 * 120.00145 * 180.02562 * 22 20 19 25 25 N 1.31518 * 119.99860 * 359.97438 * 24 22 20 26 26 Si 1.86794 * 119.99954 * 180.02562 * 24 22 20 27 27 H 1.48497 * 109.47484 * 89.99750 * 26 24 22 28 28 H 1.48503 * 109.47097 * 210.00119 * 26 24 22 29 29 H 1.48501 * 109.47201 * 329.99682 * 26 24 22 30 30 C 1.46926 * 120.62772 * 186.80698 * 16 14 12 31 31 H 1.09003 * 109.47029 * 89.99818 * 1 2 3 32 32 H 1.09001 * 109.47131 * 209.99772 * 1 2 3 33 33 H 1.08999 * 109.46740 * 329.99926 * 1 2 3 34 34 H 1.07997 * 119.99745 * 0.02562 * 3 2 1 35 35 H 1.08002 * 119.99550 * 179.97438 * 4 3 2 36 36 H 1.07996 * 120.00194 * 179.97438 * 5 4 3 37 37 H 1.08006 * 119.99221 * 180.02562 * 6 5 4 38 38 H 1.08996 * 109.46932 * 179.97438 * 10 8 7 39 39 H 1.09003 * 109.46926 * 299.99881 * 10 8 7 40 40 H 1.09000 * 109.46979 * 59.99671 * 10 8 7 41 41 H 0.97007 * 119.99744 * 334.99995 * 11 8 7 42 42 H 1.09003 * 109.58441 * 353.37418 * 17 16 14 43 43 H 1.08997 * 109.58952 * 113.65533 * 17 16 14 44 44 H 1.09001 * 109.50286 * 65.31399 * 18 17 16 45 45 H 1.09008 * 109.49984 * 185.41302 * 18 17 16 46 46 H 1.09000 * 109.45851 * 181.38368 * 19 18 17 47 47 H 1.08998 * 109.46473 * 301.35775 * 19 18 17 48 48 H 0.97002 * 119.99767 * 179.97438 * 25 24 22 49 49 H 1.08997 * 109.59036 * 246.20274 * 30 16 14 50 50 H 1.09004 * 109.59062 * 6.62890 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.2717 -0.0001 0.0016 6 6 3.5806 -1.1970 0.0027 7 6 2.1981 -1.1971 -0.0036 8 6 1.4445 -2.5021 -0.0090 9 1 0.5313 -2.3968 0.5769 10 6 1.0866 -2.8785 -1.4481 11 7 2.2820 -3.5520 0.5765 12 6 1.7100 -4.6350 1.1388 13 8 0.5014 -4.7408 1.1598 14 6 2.5644 -5.7062 1.7356 15 8 3.7647 -5.5490 1.8187 16 7 2.0016 -6.8468 2.1814 17 6 0.5767 -7.1191 1.9491 18 6 -0.0895 -7.4381 3.2912 19 6 0.6660 -8.5817 3.9721 20 6 2.1105 -8.1528 4.2398 21 1 2.1152 -7.2626 4.8688 22 6 2.8448 -9.2675 4.9394 23 1 2.3325 -10.1898 5.1707 24 6 4.1701 -9.1096 5.2852 25 7 4.7936 -7.9863 5.0039 26 14 5.0803 -10.4915 6.1517 27 1 5.7073 -11.3812 5.1415 28 1 6.1333 -9.9178 7.0277 29 1 4.1239 -11.2743 6.9750 30 6 2.8029 -7.8444 2.9035 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6583 2.1326 0.0004 35 1 4.1205 2.1326 0.0001 36 1 5.3517 -0.0002 0.0016 37 1 4.1207 -2.1324 0.0039 38 1 0.5420 -3.8226 -1.4520 39 1 0.4635 -2.0973 -1.8837 40 1 1.9998 -2.9837 -2.0340 41 1 3.2482 -3.4675 0.5594 42 1 0.1046 -6.2422 1.5061 43 1 0.4722 -7.9697 1.2756 44 1 -0.0642 -6.5546 3.9291 45 1 -1.1244 -7.7357 3.1220 46 1 0.1793 -8.8271 4.9160 47 1 0.6617 -9.4572 3.3229 48 1 5.7260 -7.8751 5.2475 49 1 2.8763 -8.7545 2.3083 50 1 3.8002 -7.4462 3.0905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336638649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:47 Heat of formation + Delta-G solvation = -52.702059 kcal Electronic energy + Delta-G solvation = -30550.943341 eV Core-core repulsion = 26542.548617 eV Total energy + Delta-G solvation = -4008.394723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.11525 -40.81365 -39.65154 -38.54372 -36.86026 -35.20642 -34.01256 -33.47485 -32.38886 -31.56505 -30.40298 -27.86893 -27.65847 -26.84789 -25.25115 -24.16039 -23.53803 -22.69644 -21.53220 -21.41929 -20.43925 -19.03041 -18.30975 -18.05036 -17.34475 -17.09934 -16.89799 -16.51460 -16.15020 -16.05894 -15.59900 -15.43623 -15.35233 -15.02989 -14.80912 -14.58125 -14.45390 -14.28782 -14.02312 -13.98701 -13.76911 -13.47144 -13.21385 -13.09578 -12.95379 -12.88105 -12.81192 -12.62137 -12.48378 -12.31157 -12.18481 -11.94800 -11.72258 -11.65174 -11.57041 -11.16175 -10.99095 -10.56676 -10.50240 -10.02696 -9.75646 -9.56079 -9.52251 -8.13039 -6.29428 0.30565 0.36313 0.44126 1.31261 1.41574 1.42178 1.52624 2.12024 2.40495 2.53510 2.80279 3.15035 3.26483 3.49571 3.87524 3.96780 4.09319 4.14419 4.18920 4.21009 4.24383 4.33537 4.45949 4.53874 4.59358 4.62576 4.72323 4.78270 4.80992 4.81725 4.84520 4.91637 4.95467 5.04901 5.06596 5.14363 5.20841 5.23316 5.25749 5.33054 5.38978 5.46988 5.55195 5.57544 5.59897 5.68207 5.82880 5.92065 5.95089 6.08467 6.28442 6.42164 6.69941 6.82148 6.95571 7.40412 8.91129 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016231 B = 0.002598 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.676261 B =10773.138833 C =11920.944410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.129 4.129 7 C -0.107 4.107 8 C 0.179 3.821 9 H 0.102 0.898 10 C -0.152 4.152 11 N -0.687 5.687 12 C 0.525 3.475 13 O -0.514 6.514 14 C 0.485 3.515 15 O -0.560 6.560 16 N -0.573 5.573 17 C 0.049 3.951 18 C -0.120 4.120 19 C -0.107 4.107 20 C 0.039 3.961 21 H -0.011 1.011 22 C -0.535 4.535 23 H 0.063 0.937 24 C 0.011 3.989 25 N -0.915 5.915 26 Si 0.960 3.040 27 H -0.274 1.274 28 H -0.286 1.286 29 H -0.264 1.264 30 C 0.121 3.879 31 H 0.088 0.912 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.136 0.864 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.413 0.587 42 H 0.157 0.843 43 H 0.072 0.928 44 H 0.045 0.955 45 H 0.099 0.901 46 H 0.053 0.947 47 H 0.058 0.942 48 H 0.261 0.739 49 H 0.045 0.955 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.051 18.030 -14.843 25.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.081 4.081 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.148 4.148 6 C -0.147 4.147 7 C -0.107 4.107 8 C 0.076 3.924 9 H 0.120 0.880 10 C -0.210 4.210 11 N -0.341 5.341 12 C 0.306 3.694 13 O -0.393 6.393 14 C 0.267 3.733 15 O -0.440 6.440 16 N -0.304 5.304 17 C -0.071 4.071 18 C -0.158 4.158 19 C -0.145 4.145 20 C 0.020 3.980 21 H 0.007 0.993 22 C -0.573 4.573 23 H 0.081 0.919 24 C -0.189 4.189 25 N -0.554 5.554 26 Si 0.785 3.215 27 H -0.200 1.200 28 H -0.212 1.212 29 H -0.188 1.188 30 C 0.000 4.000 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.162 0.838 36 H 0.154 0.846 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.252 0.748 42 H 0.173 0.827 43 H 0.090 0.910 44 H 0.064 0.936 45 H 0.117 0.883 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.121 18.113 -14.772 25.090 hybrid contribution 1.709 -0.953 0.877 2.144 sum -7.412 17.160 -13.896 23.291 Atomic orbital electron populations 1.20972 0.89652 1.03601 1.03617 1.19932 0.97250 0.91989 0.98933 1.21348 0.94495 0.97993 1.00139 1.21498 0.94697 0.98668 0.98849 1.21364 1.00940 0.92329 1.00218 1.21056 0.93833 0.98916 1.00924 1.19723 0.93889 0.93927 1.03198 1.20119 0.93279 0.82870 0.96094 0.87989 1.22115 1.02537 1.02825 0.93530 1.46116 1.12066 1.19378 1.56515 1.19934 0.87665 0.83355 0.78431 1.90262 1.14225 1.76447 1.58333 1.20465 0.87864 0.84164 0.80789 1.90725 1.15886 1.79897 1.57448 1.48465 1.12438 1.17511 1.52001 1.23334 0.78851 1.06465 0.98496 1.21821 1.00008 0.98097 0.95869 1.21567 0.95468 0.97741 0.99703 1.18986 0.92645 0.94973 0.91400 0.99327 1.21489 0.96298 1.01542 1.38007 0.91881 1.25893 0.98728 0.97910 0.96361 1.70061 1.11309 1.26408 1.47606 0.85526 0.78210 0.79223 0.78539 1.19955 1.21230 1.18848 1.22044 0.96942 0.88591 0.92451 0.89332 0.91610 0.90041 0.83561 0.83760 0.84634 0.86434 0.92150 0.88997 0.91947 0.74792 0.82700 0.91000 0.93602 0.88276 0.92805 0.92355 0.92979 0.93665 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.46 9.41 71.24 0.67 -0.79 16 2 C -0.08 -1.32 5.88 -19.86 -0.12 -1.44 16 3 C -0.12 -1.75 9.70 22.27 0.22 -1.53 16 4 C -0.12 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -2.29 10.05 22.27 0.22 -2.06 16 6 C -0.13 -2.62 9.24 22.27 0.21 -2.42 16 7 C -0.11 -2.11 5.06 -19.87 -0.10 -2.21 16 8 C 0.18 3.76 2.29 44.24 0.10 3.87 16 9 H 0.10 2.23 5.59 -2.38 -0.01 2.22 16 10 C -0.15 -2.64 9.47 71.98 0.68 -1.96 16 11 N -0.69 -18.46 4.99 -447.43 -2.23 -20.70 16 12 C 0.52 17.39 7.74 87.27 0.68 18.07 16 13 O -0.51 -16.72 12.76 -3.24 -0.04 -16.76 16 14 C 0.48 20.35 7.74 87.27 0.68 21.02 16 15 O -0.56 -26.98 15.94 -3.24 -0.05 -27.03 16 16 N -0.57 -24.56 2.97 -819.68 -2.43 -26.99 16 17 C 0.05 1.68 6.27 86.36 0.54 2.22 16 18 C -0.12 -4.11 6.08 30.67 0.19 -3.92 16 19 C -0.11 -4.38 5.10 30.62 0.16 -4.23 16 20 C 0.04 2.02 2.26 -11.32 -0.03 2.00 16 21 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 22 C -0.53 -29.69 8.56 25.60 0.22 -29.47 16 23 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 24 C 0.01 0.59 5.30 84.65 0.45 1.04 16 25 N -0.92 -55.16 11.41 21.45 0.24 -54.92 16 26 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 29 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 30 C 0.12 6.17 5.41 86.51 0.47 6.64 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.90 6.03 -2.39 -0.01 0.88 16 33 H 0.08 0.76 8.09 -2.39 -0.02 0.75 16 34 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 35 H 0.14 1.41 8.06 -2.91 -0.02 1.38 16 36 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 37 H 0.12 2.40 6.07 -2.91 -0.02 2.38 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.19 7.95 -2.39 -0.02 1.17 16 40 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.41 11.05 5.69 -92.70 -0.53 10.53 16 42 H 0.16 5.06 3.78 -78.91 -0.30 4.76 16 43 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 46 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 49 H 0.05 2.26 8.14 -2.39 -0.02 2.25 16 50 H 0.08 4.93 5.20 -2.38 -0.01 4.92 16 Total: -1.00 -69.54 394.58 3.11 -66.43 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.14 Total: 30.41 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: 5.45 Total: 3.28 kcal Atomic # 7 Polarization: -98.18 SS G_CDS: -4.42 Total: -102.60 kcal Atomic # 8 Polarization: -43.70 SS G_CDS: -0.09 Total: -43.79 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.54 3.11 -66.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336638649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.733 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds