Wall clock time and date at job start Wed Apr 1 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00357 * 2 1 4 4 C 1.38204 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00323 * 359.85495 * 4 3 2 6 6 C 1.38218 * 120.00009 * 0.40150 * 5 4 3 7 7 C 1.50697 * 120.00318 * 179.80955 * 6 5 4 8 8 H 1.08994 * 115.56307 * 154.04413 * 7 6 5 9 9 C 1.53002 * 117.49675 * 8.34349 * 7 6 5 10 10 C 1.53005 * 60.00227 * 252.51434 * 9 7 6 11 11 H 1.08996 * 117.49757 * 107.51420 * 10 9 7 12 12 C 1.50697 * 117.50027 * 252.51612 * 10 9 7 13 13 O 1.21277 * 120.00355 * 68.60142 * 12 10 9 14 14 N 1.34778 * 119.99632 * 248.61034 * 12 10 9 15 15 C 1.46505 * 119.99837 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47102 * 179.97438 * 15 14 12 17 17 O 1.42904 * 110.91778 * 67.44467 * 16 15 14 18 18 C 1.55155 * 111.00532 * 191.35091 * 16 15 14 19 19 C 1.54327 * 102.94571 * 153.57522 * 18 16 15 20 20 N 1.47024 * 107.26774 * 337.80617 * 19 18 16 21 21 C 1.36941 * 125.64618 * 179.20447 * 20 19 18 22 22 H 1.08005 * 119.99780 * 179.68989 * 21 20 19 23 23 C 1.38813 * 119.99913 * 359.69358 * 21 20 19 24 24 N 1.31616 * 119.99926 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99719 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47563 * 59.99703 * 25 23 21 27 27 H 1.48504 * 109.46777 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47166 * 299.99426 * 25 23 21 29 29 C 1.47426 * 108.70449 * 358.94057 * 20 19 18 30 30 C 1.38216 * 119.99877 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47198 * 269.97675 * 1 2 3 32 32 H 1.09000 * 109.47184 * 29.97590 * 1 2 3 33 33 H 1.08998 * 109.47617 * 149.97217 * 1 2 3 34 34 H 1.08003 * 119.99721 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.99732 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.00331 * 180.20430 * 5 4 3 37 37 H 1.09000 * 117.49554 * 145.02742 * 9 7 6 38 38 H 1.08997 * 117.52038 * 359.97438 * 9 7 6 39 39 H 0.96995 * 120.00295 * 359.97438 * 14 12 10 40 40 H 1.08995 * 109.47406 * 59.99684 * 15 14 12 41 41 H 1.08995 * 109.47210 * 299.99479 * 15 14 12 42 42 H 0.96692 * 114.00320 * 297.55415 * 17 16 15 43 43 H 1.08999 * 110.71965 * 271.93488 * 18 16 15 44 44 H 1.08996 * 110.72196 * 35.20755 * 18 16 15 45 45 H 1.08995 * 109.88184 * 218.39040 * 19 18 16 46 46 H 1.09002 * 109.88385 * 97.22047 * 19 18 16 47 47 H 0.97001 * 119.99407 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.36518 * 142.96440 * 29 20 19 49 49 H 1.08995 * 110.36673 * 265.17549 * 29 20 19 50 50 H 1.08002 * 119.99714 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0041 6 6 3.5806 -1.1971 -0.0013 7 6 4.3340 -2.5022 -0.0017 8 1 3.8019 -3.3525 0.4247 9 6 5.8494 -2.4431 0.2008 10 6 5.2742 -2.7747 -1.1777 11 1 5.3481 -2.0101 -1.9510 12 6 5.3937 -4.1982 -1.6575 13 8 4.7579 -5.0766 -1.1145 14 7 6.2074 -4.4952 -2.6901 15 6 6.3241 -5.8792 -3.1563 16 6 7.3034 -5.9411 -4.3300 17 8 8.6335 -5.6425 -3.9011 18 6 7.2428 -7.3231 -5.0327 19 6 7.6962 -6.9995 -6.4719 20 7 7.4607 -5.5649 -6.6914 21 6 7.7449 -4.8762 -7.8404 22 1 7.5288 -3.8200 -7.9044 23 6 8.3107 -5.5357 -8.9230 24 7 8.5744 -6.8228 -8.8449 25 14 8.6990 -4.5961 -10.4901 26 1 9.6636 -3.5080 -10.1888 27 1 9.2934 -5.5217 -11.4878 28 1 7.4492 -4.0116 -11.0394 29 6 6.8622 -4.9920 -5.4721 30 6 2.1980 -1.1970 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1325 0.0010 36 1 5.3516 -0.0002 0.0079 37 1 6.3143 -3.2547 0.7605 38 1 6.3018 -1.4604 0.3339 39 1 6.7158 -3.7926 -3.1246 40 1 5.3467 -6.2372 -3.4797 41 1 6.6902 -6.5066 -2.3437 42 1 8.7407 -4.7502 -3.5442 43 1 7.9294 -8.0260 -4.5609 44 1 6.2253 -7.7140 -5.0276 45 1 7.1141 -7.5840 -7.1842 46 1 8.7571 -7.2226 -6.5853 47 1 8.9701 -7.2835 -9.6012 48 1 7.2445 -3.9861 -5.2984 49 1 5.7755 -4.9750 -5.5549 50 1 1.6579 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569759091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:58 Heat of formation + Delta-G solvation = -13.549266 kcal Electronic energy + Delta-G solvation = -29297.953525 eV Core-core repulsion = 25291.256594 eV Total energy + Delta-G solvation = -4006.696931 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.54104 -39.59843 -38.55527 -36.70955 -35.07238 -34.16170 -32.83198 -32.10811 -31.16259 -29.67982 -28.35874 -27.21832 -26.01847 -24.63536 -23.86480 -23.04117 -22.34007 -20.74859 -20.06130 -20.01403 -19.67440 -17.89786 -17.11598 -16.91470 -16.28774 -15.89246 -15.44388 -15.31273 -15.18903 -14.72020 -14.46842 -14.34425 -14.11085 -14.00111 -13.78189 -13.44721 -13.33483 -12.93830 -12.77102 -12.62278 -12.49818 -12.30877 -12.14846 -11.93167 -11.71897 -11.60112 -11.24506 -11.01146 -10.95415 -10.88854 -10.74375 -10.71187 -10.37808 -10.23492 -10.15119 -9.86588 -9.73645 -9.42958 -9.10662 -9.03691 -8.79791 -8.60204 -6.85081 -5.72642 -3.06532 0.98409 1.09506 2.39905 3.00868 3.33902 3.39283 3.43225 3.44959 3.76471 4.20171 4.41188 4.45839 4.49784 4.52714 4.56913 4.63307 4.76661 4.80665 4.87383 4.95657 5.03592 5.12910 5.13742 5.26709 5.33412 5.35599 5.41289 5.50030 5.50457 5.61329 5.66476 5.71517 5.79048 5.83014 5.85251 5.95475 6.15850 6.17711 6.28843 6.32396 6.33751 6.35014 6.42027 6.53717 6.59522 6.71133 7.40843 7.51582 7.62887 7.82118 7.98659 8.14566 8.24007 9.19362 9.79470 10.44649 11.38960 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.002097 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.966850 B =13350.114736 C =14480.080492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.084 4.084 3 C -0.125 4.125 4 C -0.113 4.113 5 C -0.126 4.126 6 C -0.048 4.048 7 C -0.083 4.083 8 H 0.127 0.873 9 C -0.144 4.144 10 C -0.177 4.177 11 H 0.126 0.874 12 C 0.543 3.457 13 O -0.542 6.542 14 N -0.721 5.721 15 C 0.105 3.895 16 C 0.102 3.898 17 O -0.537 6.537 18 C -0.128 4.128 19 C 0.181 3.819 20 N -0.598 5.598 21 C -0.232 4.232 22 H 0.076 0.924 23 C -0.007 4.007 24 N -0.920 5.920 25 Si 0.913 3.087 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.117 3.883 30 C -0.109 4.109 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.120 0.880 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.401 0.599 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.365 0.635 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.044 0.956 46 H 0.051 0.949 47 H 0.253 0.747 48 H 0.037 0.963 49 H 0.026 0.974 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 13.370 20.967 26.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.084 4.084 3 C -0.143 4.143 4 C -0.131 4.131 5 C -0.143 4.143 6 C -0.048 4.048 7 C -0.102 4.102 8 H 0.145 0.855 9 C -0.181 4.181 10 C -0.199 4.199 11 H 0.144 0.856 12 C 0.329 3.671 13 O -0.420 6.420 14 N -0.372 5.372 15 C -0.020 4.020 16 C 0.060 3.940 17 O -0.341 6.341 18 C -0.167 4.167 19 C 0.057 3.943 20 N -0.324 5.324 21 C -0.360 4.360 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.567 5.567 25 Si 0.744 3.256 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C -0.010 4.010 30 C -0.127 4.127 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.235 0.765 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.210 0.790 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.062 0.938 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.044 0.956 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.679 12.027 20.894 26.368 hybrid contribution 0.399 1.423 -1.040 1.807 sum -10.281 13.449 19.854 26.091 Atomic orbital electron populations 1.20806 0.91124 1.02942 1.02354 1.19922 0.96148 0.93050 0.99328 1.21045 0.94332 0.97492 1.01455 1.21104 0.94294 0.97910 0.99835 1.21056 1.00045 0.91907 1.01327 1.19105 0.93317 0.92898 0.99498 1.21066 0.91887 0.96862 1.00345 0.85533 1.23140 0.95473 1.03740 0.95739 1.22360 1.07735 0.95982 0.93778 0.85581 1.19560 0.78821 0.89132 0.79542 1.90693 1.45267 1.49027 1.57002 1.45934 1.46198 1.10725 1.34353 1.22060 1.00497 0.82229 0.97167 1.22693 0.81585 0.98735 0.91005 1.86627 1.28190 1.35610 1.83691 1.22915 1.01303 0.93561 0.98903 1.21144 1.00024 0.84688 0.88451 1.44338 1.72434 1.05291 1.10371 1.18971 1.35137 0.92528 0.89348 0.90587 1.24811 1.01070 0.96060 0.98372 1.69950 1.48365 1.07635 1.30722 0.86186 0.78060 0.78544 0.82853 1.21164 1.21552 1.21180 1.22126 0.96223 0.94996 0.87679 1.20895 0.93346 0.97831 1.00674 0.91139 0.91516 0.91375 0.86182 0.85982 0.85836 0.87642 0.87326 0.76454 0.90424 0.90756 0.78957 0.90914 0.90931 0.93787 0.93084 0.93628 0.94461 0.95609 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.72 10.01 36.00 0.36 -0.36 16 2 C -0.08 -0.71 5.88 -104.62 -0.62 -1.32 16 3 C -0.13 -0.98 9.70 -39.59 -0.38 -1.37 16 4 C -0.11 -0.88 10.05 -39.59 -0.40 -1.27 16 5 C -0.13 -1.03 9.30 -39.58 -0.37 -1.40 16 6 C -0.05 -0.45 5.61 -104.62 -0.59 -1.03 16 7 C -0.08 -0.79 5.56 -91.77 -0.51 -1.30 16 8 H 0.13 1.35 7.67 -51.93 -0.40 0.96 16 9 C -0.14 -1.13 9.56 -26.73 -0.26 -1.39 16 10 C -0.18 -1.70 5.83 -91.77 -0.53 -2.24 16 11 H 0.13 1.06 8.14 -51.93 -0.42 0.64 16 12 C 0.54 6.95 7.61 -10.99 -0.08 6.87 16 13 O -0.54 -8.87 16.26 5.56 0.09 -8.78 16 14 N -0.72 -8.72 5.19 -60.30 -0.31 -9.03 16 15 C 0.10 1.49 4.97 -4.04 -0.02 1.47 16 16 C 0.10 1.72 0.95 -88.47 -0.08 1.64 16 17 O -0.54 -9.17 13.18 -35.23 -0.46 -9.63 16 18 C -0.13 -2.41 6.16 -24.90 -0.15 -2.56 16 19 C 0.18 4.44 5.37 -3.06 -0.02 4.43 16 20 N -0.60 -15.13 3.39 -170.07 -0.58 -15.71 16 21 C -0.23 -6.43 10.28 -15.06 -0.15 -6.58 16 22 H 0.08 2.02 7.83 -52.48 -0.41 1.60 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -27.13 10.31 55.49 0.57 -26.55 16 25 Si 0.91 22.07 29.55 -169.99 -5.02 17.04 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 C 0.12 2.29 5.74 -2.53 -0.01 2.27 16 30 C -0.11 -1.01 9.39 -39.58 -0.37 -1.39 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.35 8.09 -51.93 -0.42 -0.07 16 33 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 34 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.12 0.80 6.02 -52.49 -0.32 0.48 16 37 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.11 0.65 6.17 -51.93 -0.32 0.33 16 39 H 0.40 4.09 7.32 -40.82 -0.30 3.79 16 40 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.36 4.70 8.58 45.56 0.39 5.09 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.07 1.23 7.94 -51.93 -0.41 0.82 16 45 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 46 H 0.05 1.41 7.38 -51.93 -0.38 1.03 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.04 0.68 7.80 -51.93 -0.41 0.27 16 49 H 0.03 0.51 8.04 -51.93 -0.42 0.10 16 50 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 406.28 15.07 6.12 6.12 Total: -1.00 -34.13 406.28 -11.01 -45.14 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.13 Total: 7.21 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.29 Total: -5.81 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.32 Total: -51.29 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -0.37 Total: -18.41 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.13 -11.01 -45.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.591 kcal (2) G-P(sol) polarization free energy of solvation -34.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds