Wall clock time and date at job start Wed Apr 1 2020 04:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38260 * 120.00357 * 2 1 4 4 C 1.38204 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38253 * 120.00323 * 359.85495 * 4 3 2 6 6 C 1.38218 * 120.00009 * 0.40150 * 5 4 3 7 7 C 1.50697 * 120.00318 * 179.80955 * 6 5 4 8 8 H 1.08994 * 115.56307 * 154.04413 * 7 6 5 9 9 C 1.53002 * 117.49675 * 8.34349 * 7 6 5 10 10 C 1.53005 * 60.00227 * 252.51434 * 9 7 6 11 11 H 1.08996 * 117.49757 * 107.51420 * 10 9 7 12 12 C 1.50697 * 117.50027 * 252.51612 * 10 9 7 13 13 O 1.21277 * 120.00355 * 68.60142 * 12 10 9 14 14 N 1.34778 * 119.99632 * 248.61034 * 12 10 9 15 15 C 1.46505 * 119.99837 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47102 * 179.97438 * 15 14 12 17 17 O 1.42904 * 110.91778 * 67.44467 * 16 15 14 18 18 C 1.55155 * 111.00532 * 191.35091 * 16 15 14 19 19 C 1.54327 * 102.94571 * 153.57522 * 18 16 15 20 20 N 1.47024 * 107.26774 * 337.80617 * 19 18 16 21 21 C 1.36941 * 125.64618 * 179.20447 * 20 19 18 22 22 H 1.08005 * 119.99780 * 179.68989 * 21 20 19 23 23 C 1.38813 * 119.99913 * 359.69358 * 21 20 19 24 24 N 1.31616 * 119.99926 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99719 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47563 * 59.99703 * 25 23 21 27 27 H 1.48504 * 109.46777 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47166 * 299.99426 * 25 23 21 29 29 C 1.47426 * 108.70449 * 358.94057 * 20 19 18 30 30 C 1.38216 * 119.99877 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47198 * 269.97675 * 1 2 3 32 32 H 1.09000 * 109.47184 * 29.97590 * 1 2 3 33 33 H 1.08998 * 109.47617 * 149.97217 * 1 2 3 34 34 H 1.08003 * 119.99721 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.99732 * 180.02562 * 4 3 2 36 36 H 1.08000 * 120.00331 * 180.20430 * 5 4 3 37 37 H 1.09000 * 117.49554 * 145.02742 * 9 7 6 38 38 H 1.08997 * 117.52038 * 359.97438 * 9 7 6 39 39 H 0.96995 * 120.00295 * 359.97438 * 14 12 10 40 40 H 1.08995 * 109.47406 * 59.99684 * 15 14 12 41 41 H 1.08995 * 109.47210 * 299.99479 * 15 14 12 42 42 H 0.96692 * 114.00320 * 297.55415 * 17 16 15 43 43 H 1.08999 * 110.71965 * 271.93488 * 18 16 15 44 44 H 1.08996 * 110.72196 * 35.20755 * 18 16 15 45 45 H 1.08995 * 109.88184 * 218.39040 * 19 18 16 46 46 H 1.09002 * 109.88385 * 97.22047 * 19 18 16 47 47 H 0.97001 * 119.99407 * 180.02562 * 24 23 21 48 48 H 1.09002 * 110.36518 * 142.96440 * 29 20 19 49 49 H 1.08995 * 110.36673 * 265.17549 * 29 20 19 50 50 H 1.08002 * 119.99714 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2716 -0.0001 0.0041 6 6 3.5806 -1.1971 -0.0013 7 6 4.3340 -2.5022 -0.0017 8 1 3.8019 -3.3525 0.4247 9 6 5.8494 -2.4431 0.2008 10 6 5.2742 -2.7747 -1.1777 11 1 5.3481 -2.0101 -1.9510 12 6 5.3937 -4.1982 -1.6575 13 8 4.7579 -5.0766 -1.1145 14 7 6.2074 -4.4952 -2.6901 15 6 6.3241 -5.8792 -3.1563 16 6 7.3034 -5.9411 -4.3300 17 8 8.6335 -5.6425 -3.9011 18 6 7.2428 -7.3231 -5.0327 19 6 7.6962 -6.9995 -6.4719 20 7 7.4607 -5.5649 -6.6914 21 6 7.7449 -4.8762 -7.8404 22 1 7.5288 -3.8200 -7.9044 23 6 8.3107 -5.5357 -8.9230 24 7 8.5744 -6.8228 -8.8449 25 14 8.6990 -4.5961 -10.4901 26 1 9.6636 -3.5080 -10.1888 27 1 9.2934 -5.5217 -11.4878 28 1 7.4492 -4.0116 -11.0394 29 6 6.8622 -4.9920 -5.4721 30 6 2.1980 -1.1970 -0.0005 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 1.6583 2.1327 0.0004 35 1 4.1204 2.1325 0.0010 36 1 5.3516 -0.0002 0.0079 37 1 6.3143 -3.2547 0.7605 38 1 6.3018 -1.4604 0.3339 39 1 6.7158 -3.7926 -3.1246 40 1 5.3467 -6.2372 -3.4797 41 1 6.6902 -6.5066 -2.3437 42 1 8.7407 -4.7502 -3.5442 43 1 7.9294 -8.0260 -4.5609 44 1 6.2253 -7.7140 -5.0276 45 1 7.1141 -7.5840 -7.1842 46 1 8.7571 -7.2226 -6.5853 47 1 8.9701 -7.2835 -9.6012 48 1 7.2445 -3.9861 -5.2984 49 1 5.7755 -4.9750 -5.5549 50 1 1.6579 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569759091.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:57 Heat of formation + Delta-G solvation = -35.940110 kcal Electronic energy + Delta-G solvation = -29298.924465 eV Core-core repulsion = 25291.256594 eV Total energy + Delta-G solvation = -4007.667871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.43229 -40.52067 -39.81991 -37.51985 -36.70969 -35.34163 -33.99892 -33.38217 -31.82001 -31.39622 -29.85899 -27.81722 -27.57367 -26.04493 -24.65841 -24.17838 -22.95896 -22.25997 -21.42354 -21.19597 -20.52679 -19.00777 -18.67524 -17.95231 -17.35822 -16.95412 -16.71975 -16.38272 -16.22819 -15.99445 -15.73655 -15.65491 -15.10641 -15.07256 -14.72004 -14.60562 -14.33111 -14.02239 -13.91307 -13.67974 -13.54673 -13.24545 -13.18070 -13.00915 -12.93908 -12.78649 -12.73851 -12.35847 -12.20458 -12.11266 -12.05274 -11.85124 -11.80682 -11.76625 -11.55979 -11.42500 -11.01436 -10.85426 -10.68479 -10.18719 -9.64458 -9.40335 -8.89715 -7.84879 -5.20661 0.37579 0.49763 1.45419 1.45796 1.49260 1.55461 2.03743 2.49027 2.66534 3.08081 3.17829 3.33667 3.44347 3.51478 3.63938 3.68996 3.85932 3.91918 3.96773 3.97225 4.07623 4.11514 4.22946 4.26476 4.47080 4.51693 4.55050 4.58035 4.64368 4.75375 4.79804 4.82209 4.85729 4.92325 4.95392 4.96272 5.02332 5.07020 5.09541 5.18746 5.31012 5.32658 5.43534 5.60328 5.62873 5.69868 5.73382 5.75526 6.14290 6.18415 6.44802 6.82750 7.08754 7.16304 7.76223 8.40317 9.25623 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013273 B = 0.002097 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.966850 B =13350.114736 C =14480.080492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.134 4.134 4 C -0.118 4.118 5 C -0.131 4.131 6 C -0.059 4.059 7 C -0.090 4.090 8 H 0.106 0.894 9 C -0.123 4.123 10 C -0.179 4.179 11 H 0.144 0.856 12 C 0.542 3.458 13 O -0.582 6.582 14 N -0.712 5.712 15 C 0.120 3.880 16 C 0.123 3.877 17 O -0.553 6.553 18 C -0.122 4.122 19 C 0.190 3.810 20 N -0.621 5.621 21 C -0.243 4.243 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.952 5.952 25 Si 0.980 3.020 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.276 1.276 29 C 0.113 3.887 30 C -0.132 4.132 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.144 0.856 36 H 0.143 0.857 37 H 0.103 0.897 38 H 0.135 0.865 39 H 0.413 0.587 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.384 0.616 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.008 0.992 46 H 0.009 0.991 47 H 0.246 0.754 48 H 0.057 0.943 49 H 0.032 0.968 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.479 16.217 22.228 29.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.152 4.152 4 C -0.136 4.136 5 C -0.148 4.148 6 C -0.059 4.059 7 C -0.109 4.109 8 H 0.124 0.876 9 C -0.160 4.160 10 C -0.200 4.200 11 H 0.161 0.839 12 C 0.330 3.670 13 O -0.462 6.462 14 N -0.364 5.364 15 C -0.005 4.005 16 C 0.081 3.919 17 O -0.360 6.360 18 C -0.160 4.160 19 C 0.065 3.935 20 N -0.347 5.347 21 C -0.371 4.371 22 H 0.104 0.896 23 C -0.262 4.262 24 N -0.601 5.601 25 Si 0.808 3.192 26 H -0.201 1.201 27 H -0.223 1.223 28 H -0.202 1.202 29 C -0.013 4.013 30 C -0.150 4.150 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.121 0.879 38 H 0.153 0.847 39 H 0.249 0.751 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.233 0.767 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.050 0.950 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.730 14.932 22.186 28.815 hybrid contribution 0.377 0.571 -1.379 1.540 sum -10.353 15.503 20.806 27.936 Atomic orbital electron populations 1.20837 0.89978 1.03359 1.02990 1.20196 0.97232 0.93026 0.99107 1.21355 0.94821 0.97988 1.00990 1.21440 0.94454 0.98724 0.98972 1.21292 1.01072 0.91525 1.00953 1.19165 0.93326 0.93177 1.00250 1.20972 0.92866 0.96541 1.00508 0.87577 1.23262 0.94116 1.04922 0.93702 1.22332 1.08745 0.94108 0.94818 0.83859 1.20077 0.77871 0.90105 0.78922 1.90682 1.46798 1.50514 1.58242 1.45808 1.46205 1.10120 1.34245 1.21737 0.99233 0.83623 0.95921 1.22360 0.82209 0.96347 0.90986 1.86595 1.28149 1.37417 1.83796 1.22804 1.02542 0.95286 0.95412 1.20833 0.96951 0.84494 0.91263 1.44630 1.72673 1.05771 1.11628 1.19433 1.34140 0.93199 0.90368 0.89608 1.25703 1.01767 0.96990 1.01751 1.70193 1.49588 1.09202 1.31125 0.85126 0.78068 0.77206 0.78761 1.20095 1.22314 1.20207 1.22344 0.96126 0.96379 0.86445 1.21040 0.93865 0.98187 1.01867 0.90356 0.90449 0.91603 0.84398 0.83803 0.83934 0.87875 0.84676 0.75063 0.90865 0.90509 0.76673 0.89924 0.88892 0.97357 0.97310 0.94468 0.92482 0.95039 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.32 10.01 71.24 0.71 -0.60 16 2 C -0.10 -1.51 5.88 -19.87 -0.12 -1.62 16 3 C -0.13 -1.83 9.70 22.27 0.22 -1.62 16 4 C -0.12 -1.52 10.05 22.27 0.22 -1.29 16 5 C -0.13 -1.82 9.30 22.27 0.21 -1.61 16 6 C -0.06 -1.02 5.61 -19.87 -0.11 -1.14 16 7 C -0.09 -1.62 5.56 -11.54 -0.06 -1.68 16 8 H 0.11 2.33 7.67 -2.39 -0.02 2.31 16 9 C -0.12 -1.63 9.56 30.60 0.29 -1.33 16 10 C -0.18 -3.06 5.83 -11.54 -0.07 -3.13 16 11 H 0.14 1.96 8.14 -2.39 -0.02 1.94 16 12 C 0.54 13.00 7.61 87.66 0.67 13.66 16 13 O -0.58 -18.68 16.26 -3.02 -0.05 -18.73 16 14 N -0.71 -15.54 5.19 -463.07 -2.40 -17.94 16 15 C 0.12 3.17 4.97 86.38 0.43 3.60 16 16 C 0.12 3.94 0.95 -9.40 -0.01 3.93 16 17 O -0.55 -17.74 13.18 -148.98 -1.96 -19.70 16 18 C -0.12 -4.52 6.16 31.78 0.20 -4.33 16 19 C 0.19 9.58 5.37 86.73 0.47 10.04 16 20 N -0.62 -31.51 3.39 -691.97 -2.35 -33.86 16 21 C -0.24 -13.47 10.28 84.03 0.86 -12.61 16 22 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 23 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 24 N -0.95 -58.18 10.31 21.65 0.22 -57.96 16 25 Si 0.98 45.75 29.55 68.60 2.03 47.78 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 29 C 0.11 4.23 5.74 86.86 0.50 4.72 16 30 C -0.13 -2.41 9.39 22.27 0.21 -2.20 16 31 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 0.70 8.09 -2.39 -0.02 0.68 16 33 H 0.06 0.76 8.09 -2.39 -0.02 0.74 16 34 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 36 H 0.14 1.32 6.02 -2.91 -0.02 1.30 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.14 1.07 6.17 -2.39 -0.01 1.06 16 39 H 0.41 7.11 7.32 -92.71 -0.68 6.44 16 40 H 0.07 2.06 8.00 -2.39 -0.02 2.04 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.38 8.80 8.58 -74.06 -0.64 8.17 16 43 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.09 3.06 7.94 -2.39 -0.02 3.04 16 45 H 0.01 0.46 7.51 -2.39 -0.02 0.45 16 46 H 0.01 0.50 7.38 -2.39 -0.02 0.48 16 47 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 48 H 0.06 1.92 7.80 -2.39 -0.02 1.90 16 49 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 50 H 0.12 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -76.20 406.28 0.21 -75.99 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: -0.35 Total: 25.12 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.08 Total: -0.70 kcal Atomic # 7 Polarization: -105.23 SS G_CDS: -4.53 Total: -109.76 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -2.01 Total: -38.43 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -76.20 0.21 -75.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569759091.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.047 kcal (2) G-P(sol) polarization free energy of solvation -76.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds