Wall clock time and date at job start Wed Apr 1 2020 03:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00124 * 2 1 4 4 C 1.38209 * 119.99887 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00228 * 359.74016 * 4 3 2 6 6 C 1.38210 * 119.99468 * 0.51250 * 5 4 3 7 7 C 1.50699 * 119.99822 * 179.76218 * 6 5 4 8 8 C 1.50695 * 109.47273 * 269.72874 * 7 6 5 9 9 O 1.21280 * 120.00354 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99918 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00052 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47571 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.34730 * 304.34042 * 12 11 10 14 14 C 1.55008 * 110.30550 * 182.20852 * 12 11 10 15 15 C 1.55487 * 101.04696 * 205.04929 * 14 12 11 16 16 C 1.53652 * 101.96773 * 33.48573 * 15 14 12 17 17 C 1.52702 * 115.26849 * 206.90010 * 16 15 14 18 18 N 1.47208 * 87.79904 * 219.25812 * 17 16 15 19 19 C 1.36932 * 135.97409 * 206.46511 * 18 17 16 20 20 H 1.08006 * 119.99674 * 6.76869 * 19 18 17 21 21 C 1.38811 * 120.00374 * 186.77404 * 19 18 17 22 22 N 1.31618 * 120.00337 * 172.31805 * 21 19 18 23 23 Si 1.86801 * 119.99849 * 352.31733 * 21 19 18 24 24 H 1.48494 * 109.47270 * 175.35407 * 23 21 19 25 25 H 1.48506 * 109.46884 * 55.35502 * 23 21 19 26 26 H 1.48499 * 109.47041 * 295.36080 * 23 21 19 27 27 C 1.47215 * 88.05332 * 26.71222 * 18 17 16 28 28 O 1.42391 * 108.53485 * 339.13619 * 16 15 14 29 29 C 1.38208 * 119.99744 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46850 * 270.02284 * 1 2 3 31 31 H 1.08999 * 109.46971 * 30.02377 * 1 2 3 32 32 H 1.08999 * 109.46901 * 150.02290 * 1 2 3 33 33 H 1.07994 * 119.99960 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.00157 * 180.02562 * 4 3 2 35 35 H 1.07993 * 120.00092 * 180.28021 * 5 4 3 36 36 H 1.09004 * 109.47275 * 149.72880 * 7 6 5 37 37 H 1.09001 * 109.46935 * 29.73141 * 7 6 5 38 38 H 0.96997 * 120.00091 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.46738 * 60.00034 * 11 10 8 40 40 H 1.09001 * 109.47452 * 300.00307 * 11 10 8 41 41 H 1.09001 * 111.10723 * 322.99931 * 14 12 11 42 42 H 1.09002 * 111.10122 * 87.06191 * 14 12 11 43 43 H 1.09005 * 110.92676 * 275.31722 * 15 14 12 44 44 H 1.08998 * 110.93082 * 151.65951 * 15 14 12 45 45 H 1.08999 * 113.49717 * 104.52035 * 17 16 15 46 46 H 1.09001 * 113.55301 * 334.00276 * 17 16 15 47 47 H 0.97002 * 119.99927 * 4.89802 * 22 21 19 48 48 H 1.08996 * 113.49635 * 88.02371 * 27 18 17 49 49 H 1.09000 * 113.49895 * 218.56016 * 27 18 17 50 50 H 1.08001 * 120.00251 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0001 0.0065 6 6 3.5807 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 6 4.5859 -2.9380 -1.4181 9 8 4.1919 -2.2563 -2.3405 10 7 5.2490 -4.0855 -1.6634 11 6 5.4933 -4.5095 -3.0442 12 6 6.2594 -5.8339 -3.0432 13 1 7.1798 -5.7388 -2.4669 14 6 6.5770 -6.2728 -4.4955 15 6 6.7125 -7.8116 -4.3188 16 6 5.6893 -8.0962 -3.2085 17 6 5.9821 -9.3259 -2.3518 18 7 4.5373 -9.6079 -2.3636 19 6 3.6540 -10.2563 -1.5424 20 1 3.9787 -10.6168 -0.5774 21 6 2.3414 -10.4504 -1.9501 22 7 1.5336 -11.2020 -1.2325 23 14 1.7214 -9.6448 -3.5173 24 1 0.3328 -10.0952 -3.7895 25 1 2.5982 -10.0302 -4.6523 26 1 1.7405 -8.1687 -3.3561 27 6 4.4592 -8.8929 -3.6481 28 8 5.4385 -6.8851 -2.5028 29 6 2.1980 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6584 2.1326 -0.0004 34 1 4.1206 2.1326 0.0010 35 1 5.3517 -0.0001 0.0115 36 1 3.7448 -3.2615 0.5163 37 1 5.2863 -2.3715 0.5165 38 1 5.5638 -4.6309 -0.9256 39 1 6.0820 -3.7500 -3.5587 40 1 4.5409 -4.6408 -3.5580 41 1 5.7560 -6.0257 -5.1686 42 1 7.5119 -5.8330 -4.8428 43 1 7.7194 -8.0795 -3.9985 44 1 6.4458 -8.3340 -5.2375 45 1 6.3697 -9.0838 -1.3622 46 1 6.5768 -10.0821 -2.8642 47 1 1.8331 -11.5622 -0.3831 48 1 4.6410 -9.5313 -4.5126 49 1 3.5605 -8.2851 -3.7532 50 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570233777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:54 Heat of formation + Delta-G solvation = 2.565090 kcal Electronic energy + Delta-G solvation = -29694.581238 eV Core-core repulsion = 25688.583079 eV Total energy + Delta-G solvation = -4005.998160 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.39852 -40.00790 -38.92969 -36.91611 -34.53810 -33.66058 -32.36571 -32.22502 -32.02512 -29.86667 -28.12927 -27.07342 -26.60705 -25.49865 -23.84551 -22.33221 -21.57002 -21.39658 -20.98103 -20.05564 -19.31945 -17.50504 -17.21366 -16.82354 -16.63519 -16.03999 -15.90568 -15.75320 -14.97019 -14.81292 -14.52666 -14.06009 -13.98863 -13.85465 -13.70639 -13.36609 -13.30681 -13.18522 -13.10724 -13.01884 -12.76465 -12.42599 -12.22024 -12.03284 -11.92961 -11.69286 -11.63084 -11.37624 -11.18897 -11.11659 -10.84080 -10.66747 -10.47120 -10.27943 -9.94234 -9.64841 -9.18260 -9.09898 -8.90245 -8.82621 -8.77370 -8.71527 -7.11482 -6.28450 -3.18032 1.19475 1.28442 2.61433 3.08775 3.42590 3.49329 3.64953 3.68155 3.78774 4.44716 4.45502 4.61365 4.62783 4.66456 4.74161 4.77020 4.85545 4.88470 4.94930 4.96836 5.06871 5.11052 5.15792 5.32296 5.33978 5.37067 5.42978 5.44215 5.49951 5.52804 5.56497 5.66600 5.70276 5.88173 5.91555 5.93720 5.99810 6.05467 6.17671 6.21857 6.31171 6.31436 6.36403 6.40855 6.42389 6.48372 6.48519 6.88534 7.13523 7.44661 7.45884 8.19206 8.26479 9.01136 9.53830 10.39627 11.24619 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002631 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.059342 B =10638.001368 C =12287.927118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.112 4.112 6 C -0.059 4.059 7 C -0.105 4.105 8 C 0.515 3.485 9 O -0.536 6.536 10 N -0.724 5.724 11 C 0.124 3.876 12 C 0.063 3.937 13 H 0.076 0.924 14 C -0.146 4.146 15 C -0.137 4.137 16 C 0.069 3.931 17 C 0.117 3.883 18 N -0.622 5.622 19 C -0.299 4.299 20 H 0.082 0.918 21 C -0.025 4.025 22 N -0.936 5.936 23 Si 1.070 2.930 24 H -0.296 1.296 25 H -0.288 1.288 26 H -0.292 1.292 27 C 0.095 3.905 28 O -0.332 6.332 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.406 0.594 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.048 0.952 47 H 0.260 0.740 48 H 0.055 0.945 49 H 0.057 0.943 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.366 22.484 -0.381 24.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.145 4.145 8 C 0.301 3.699 9 O -0.413 6.413 10 N -0.376 5.376 11 C 0.000 4.000 12 C 0.004 3.996 13 H 0.094 0.906 14 C -0.184 4.184 15 C -0.176 4.176 16 C 0.028 3.972 17 C -0.009 4.009 18 N -0.349 5.349 19 C -0.425 4.425 20 H 0.100 0.900 21 C -0.224 4.224 22 N -0.579 5.579 23 Si 0.903 3.097 24 H -0.223 1.223 25 H -0.215 1.215 26 H -0.220 1.220 27 C -0.031 4.031 28 O -0.251 6.251 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.121 0.879 38 H 0.240 0.760 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.074 0.926 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.427 22.962 -1.706 24.519 hybrid contribution 1.709 -0.569 1.227 2.179 sum 10.136 22.393 -0.479 24.585 Atomic orbital electron populations 1.20799 0.91187 1.02917 1.02266 1.19885 0.96094 0.93069 0.99519 1.20997 0.94280 0.97379 1.01482 1.21049 0.94302 0.97773 1.00406 1.20928 0.99538 0.92002 1.00579 1.19248 0.93523 0.93562 0.99589 1.20694 1.02370 0.96473 0.94928 1.20488 0.77521 0.80665 0.91254 1.90720 1.50299 1.54043 1.46198 1.45913 1.58632 1.23917 1.09150 1.21525 1.01001 0.93944 0.83509 1.23307 0.93672 0.87997 0.94583 0.90626 1.23225 1.02851 0.96185 0.96173 1.22908 0.99818 0.95323 0.99547 1.23211 0.95929 0.86008 0.92026 1.22626 0.88354 0.92045 0.97914 1.45839 1.02912 1.65994 1.20195 1.20098 0.91065 1.32944 0.98429 0.90024 1.25696 0.92365 0.98633 1.05685 1.70927 1.38953 1.33311 1.14706 0.83694 0.75305 0.75293 0.75364 1.22300 1.21521 1.22044 1.23105 0.96440 0.92537 0.91025 1.88436 1.62761 1.16828 1.57062 1.20922 0.93452 0.97831 1.00062 0.91185 0.91614 0.91367 0.86309 0.86188 0.86389 0.87590 0.87916 0.75964 0.90399 0.90651 0.89943 0.89890 0.90238 0.89620 0.93222 0.93423 0.93008 0.92747 0.92554 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.98 10.01 36.01 0.36 -0.62 16 2 C -0.09 -0.93 5.88 -104.62 -0.62 -1.54 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 5 C -0.11 -1.19 9.70 -39.58 -0.38 -1.58 16 6 C -0.06 -0.68 4.37 -104.62 -0.46 -1.13 16 7 C -0.10 -1.05 5.83 -29.04 -0.17 -1.22 16 8 C 0.51 6.73 7.82 -10.99 -0.09 6.65 16 9 O -0.54 -9.06 16.03 5.56 0.09 -8.97 16 10 N -0.72 -8.65 5.54 -60.29 -0.33 -8.98 16 11 C 0.12 1.52 5.38 -4.04 -0.02 1.50 16 12 C 0.06 0.75 3.49 -25.67 -0.09 0.66 16 13 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 14 C -0.15 -1.52 6.58 -24.35 -0.16 -1.68 16 15 C -0.14 -1.67 6.39 -25.07 -0.16 -1.83 16 16 C 0.07 1.20 1.75 -90.44 -0.16 1.04 16 17 C 0.12 2.32 8.20 -8.07 -0.07 2.25 16 18 N -0.62 -15.72 3.70 -184.58 -0.68 -16.40 16 19 C -0.30 -8.87 11.08 -15.06 -0.17 -9.04 16 20 H 0.08 2.54 8.05 -52.48 -0.42 2.11 16 21 C -0.03 -0.78 5.50 -17.43 -0.10 -0.87 16 22 N -0.94 -30.22 13.70 55.49 0.76 -29.46 16 23 Si 1.07 27.81 25.13 -169.99 -4.27 23.54 16 24 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 25 H -0.29 -6.86 6.11 56.52 0.35 -6.52 16 26 H -0.29 -7.40 6.64 56.52 0.38 -7.03 16 27 C 0.09 2.04 5.19 -7.91 -0.04 2.00 16 28 O -0.33 -5.74 10.84 -35.23 -0.38 -6.12 16 29 C -0.10 -1.24 9.36 -39.58 -0.37 -1.61 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.49 8.09 -51.93 -0.42 0.07 16 32 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 35 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 36 H 0.11 0.95 8.09 -51.93 -0.42 0.53 16 37 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 38 H 0.41 4.21 8.47 -40.82 -0.35 3.86 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.08 0.87 8.05 -51.93 -0.42 0.45 16 42 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.08 0.83 8.13 -51.93 -0.42 0.40 16 44 H 0.09 0.97 7.81 -51.93 -0.41 0.57 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.05 0.86 8.13 -51.93 -0.42 0.44 16 47 H 0.26 8.26 8.73 -40.82 -0.36 7.90 16 48 H 0.06 1.11 7.50 -51.93 -0.39 0.72 16 49 H 0.06 1.31 4.70 -51.93 -0.24 1.06 16 50 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -37.53 404.07 -10.41 -47.94 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.21 Total: 2.57 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: -3.46 Total: -10.20 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.26 Total: -54.84 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: -0.29 Total: -15.10 kcal Atomic # 14 Polarization: 27.81 SS G_CDS: -4.27 Total: 23.54 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -37.53 -10.41 -47.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570233777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.504 kcal (2) G-P(sol) polarization free energy of solvation -37.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds