Wall clock time and date at job start Wed Apr 1 2020 03:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38257 * 120.00124 * 2 1 4 4 C 1.38209 * 119.99887 * 179.97438 * 3 2 1 5 5 C 1.38262 * 120.00228 * 359.74016 * 4 3 2 6 6 C 1.38210 * 119.99468 * 0.51250 * 5 4 3 7 7 C 1.50699 * 119.99822 * 179.76218 * 6 5 4 8 8 C 1.50695 * 109.47273 * 269.72874 * 7 6 5 9 9 O 1.21280 * 120.00354 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99918 * 179.97438 * 8 7 6 11 11 C 1.46502 * 120.00052 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47571 * 179.97438 * 11 10 8 13 13 H 1.09001 * 110.34730 * 304.34042 * 12 11 10 14 14 C 1.55008 * 110.30550 * 182.20852 * 12 11 10 15 15 C 1.55487 * 101.04696 * 205.04929 * 14 12 11 16 16 C 1.53652 * 101.96773 * 33.48573 * 15 14 12 17 17 C 1.52702 * 115.26849 * 206.90010 * 16 15 14 18 18 N 1.47208 * 87.79904 * 219.25812 * 17 16 15 19 19 C 1.36932 * 135.97409 * 206.46511 * 18 17 16 20 20 H 1.08006 * 119.99674 * 6.76869 * 19 18 17 21 21 C 1.38811 * 120.00374 * 186.77404 * 19 18 17 22 22 N 1.31618 * 120.00337 * 172.31805 * 21 19 18 23 23 Si 1.86801 * 119.99849 * 352.31733 * 21 19 18 24 24 H 1.48494 * 109.47270 * 175.35407 * 23 21 19 25 25 H 1.48506 * 109.46884 * 55.35502 * 23 21 19 26 26 H 1.48499 * 109.47041 * 295.36080 * 23 21 19 27 27 C 1.47215 * 88.05332 * 26.71222 * 18 17 16 28 28 O 1.42391 * 108.53485 * 339.13619 * 16 15 14 29 29 C 1.38208 * 119.99744 * 179.97438 * 2 1 3 30 30 H 1.08992 * 109.46850 * 270.02284 * 1 2 3 31 31 H 1.08999 * 109.46971 * 30.02377 * 1 2 3 32 32 H 1.08999 * 109.46901 * 150.02290 * 1 2 3 33 33 H 1.07994 * 119.99960 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.00157 * 180.02562 * 4 3 2 35 35 H 1.07993 * 120.00092 * 180.28021 * 5 4 3 36 36 H 1.09004 * 109.47275 * 149.72880 * 7 6 5 37 37 H 1.09001 * 109.46935 * 29.73141 * 7 6 5 38 38 H 0.96997 * 120.00091 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.46738 * 60.00034 * 11 10 8 40 40 H 1.09001 * 109.47452 * 300.00307 * 11 10 8 41 41 H 1.09001 * 111.10723 * 322.99931 * 14 12 11 42 42 H 1.09002 * 111.10122 * 87.06191 * 14 12 11 43 43 H 1.09005 * 110.92676 * 275.31722 * 15 14 12 44 44 H 1.08998 * 110.93082 * 151.65951 * 15 14 12 45 45 H 1.08999 * 113.49717 * 104.52035 * 17 16 15 46 46 H 1.09001 * 113.55301 * 334.00276 * 17 16 15 47 47 H 0.97002 * 119.99927 * 4.89802 * 22 21 19 48 48 H 1.08996 * 113.49635 * 88.02371 * 27 18 17 49 49 H 1.09000 * 113.49895 * 218.56016 * 27 18 17 50 50 H 1.08001 * 120.00251 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2718 -0.0001 0.0065 6 6 3.5807 -1.1970 0.0012 7 6 4.3341 -2.5021 0.0023 8 6 4.5859 -2.9380 -1.4181 9 8 4.1919 -2.2563 -2.3405 10 7 5.2490 -4.0855 -1.6634 11 6 5.4933 -4.5095 -3.0442 12 6 6.2594 -5.8339 -3.0432 13 1 7.1798 -5.7388 -2.4669 14 6 6.5770 -6.2728 -4.4955 15 6 6.7125 -7.8116 -4.3188 16 6 5.6893 -8.0962 -3.2085 17 6 5.9821 -9.3259 -2.3518 18 7 4.5373 -9.6079 -2.3636 19 6 3.6540 -10.2563 -1.5424 20 1 3.9787 -10.6168 -0.5774 21 6 2.3414 -10.4504 -1.9501 22 7 1.5336 -11.2020 -1.2325 23 14 1.7214 -9.6448 -3.5173 24 1 0.3328 -10.0952 -3.7895 25 1 2.5982 -10.0302 -4.6523 26 1 1.7405 -8.1687 -3.3561 27 6 4.4592 -8.8929 -3.6481 28 8 5.4385 -6.8851 -2.5028 29 6 2.1980 -1.1969 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6584 2.1326 -0.0004 34 1 4.1206 2.1326 0.0010 35 1 5.3517 -0.0001 0.0115 36 1 3.7448 -3.2615 0.5163 37 1 5.2863 -2.3715 0.5165 38 1 5.5638 -4.6309 -0.9256 39 1 6.0820 -3.7500 -3.5587 40 1 4.5409 -4.6408 -3.5580 41 1 5.7560 -6.0257 -5.1686 42 1 7.5119 -5.8330 -4.8428 43 1 7.7194 -8.0795 -3.9985 44 1 6.4458 -8.3340 -5.2375 45 1 6.3697 -9.0838 -1.3622 46 1 6.5768 -10.0821 -2.8642 47 1 1.8331 -11.5622 -0.3831 48 1 4.6410 -9.5313 -4.5126 49 1 3.5605 -8.2851 -3.7532 50 1 1.6580 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570233777.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:53 Heat of formation + Delta-G solvation = -23.864406 kcal Electronic energy + Delta-G solvation = -29695.727307 eV Core-core repulsion = 25688.583079 eV Total energy + Delta-G solvation = -4007.144229 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61037 -41.01503 -39.83931 -38.33852 -35.68279 -34.51834 -34.44211 -33.17673 -32.91812 -31.12969 -29.36496 -28.14072 -27.61633 -27.13836 -25.09621 -23.19356 -22.78711 -22.54747 -22.06618 -20.97995 -20.78959 -19.59232 -18.18352 -17.92916 -17.49948 -17.35304 -16.96843 -16.76630 -16.12331 -15.92361 -15.64165 -15.50263 -15.41541 -15.20078 -14.93560 -14.65780 -14.44843 -14.27941 -14.11843 -13.84480 -13.82128 -13.44117 -13.34588 -13.16838 -12.78820 -12.76545 -12.68171 -12.58767 -12.49951 -12.22670 -11.96276 -11.93737 -11.87132 -11.69717 -11.32263 -11.20195 -11.02785 -10.98569 -10.24285 -10.12656 -9.71096 -9.49281 -9.20626 -8.67680 -5.47090 0.40237 0.48595 1.32149 1.43307 1.61019 1.62179 2.17785 2.48684 2.60611 2.89178 2.98515 3.20699 3.47320 3.61644 3.65130 3.74117 3.87072 3.90381 4.00894 4.05709 4.14707 4.22496 4.33988 4.42817 4.45315 4.46089 4.52191 4.57488 4.59755 4.60076 4.65575 4.74391 4.78240 4.81203 4.82992 4.91948 4.94977 4.96370 5.03293 5.12396 5.16677 5.20322 5.28341 5.30021 5.40669 5.55051 5.63626 5.69420 5.92690 6.12976 6.25048 6.51150 6.68374 7.21573 7.31128 8.26563 8.88514 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011121 B = 0.002631 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.059342 B =10638.001368 C =12287.927118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.100 4.100 3 C -0.132 4.132 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.075 4.075 7 C -0.100 4.100 8 C 0.512 3.488 9 O -0.579 6.579 10 N -0.720 5.720 11 C 0.125 3.875 12 C 0.061 3.939 13 H 0.103 0.897 14 C -0.138 4.138 15 C -0.127 4.127 16 C 0.089 3.911 17 C 0.113 3.887 18 N -0.660 5.660 19 C -0.284 4.284 20 H 0.049 0.951 21 C -0.087 4.087 22 N -0.973 5.973 23 Si 1.111 2.889 24 H -0.304 1.304 25 H -0.252 1.252 26 H -0.290 1.290 27 C 0.081 3.919 28 O -0.367 6.367 29 C -0.132 4.132 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.141 0.859 34 H 0.145 0.855 35 H 0.135 0.865 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.414 0.586 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.078 0.922 42 H 0.121 0.879 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.246 0.754 48 H 0.075 0.925 49 H 0.037 0.963 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 24.661 -2.128 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.075 4.075 7 C -0.139 4.139 8 C 0.300 3.700 9 O -0.459 6.459 10 N -0.371 5.371 11 C 0.001 3.999 12 C 0.004 3.996 13 H 0.121 0.879 14 C -0.176 4.176 15 C -0.166 4.166 16 C 0.048 3.952 17 C -0.012 4.012 18 N -0.388 5.388 19 C -0.412 4.412 20 H 0.067 0.933 21 C -0.278 4.278 22 N -0.619 5.619 23 Si 0.938 3.062 24 H -0.232 1.232 25 H -0.177 1.177 26 H -0.218 1.218 27 C -0.044 4.044 28 O -0.286 6.286 29 C -0.151 4.151 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.130 0.870 37 H 0.152 0.848 38 H 0.250 0.750 39 H 0.114 0.886 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.140 0.860 43 H 0.125 0.875 44 H 0.117 0.883 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.055 0.945 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.493 25.139 -3.456 27.857 hybrid contribution 0.884 -1.189 1.865 2.382 sum 12.378 23.950 -1.591 27.006 Atomic orbital electron populations 1.20826 0.89990 1.03172 1.03046 1.20209 0.97269 0.93181 0.99352 1.21328 0.94734 0.97920 1.00965 1.21433 0.94537 0.98660 0.99344 1.21228 1.00578 0.91969 1.00468 1.19483 0.93560 0.94592 0.99886 1.20735 1.03917 0.96053 0.93211 1.20990 0.76656 0.80371 0.92002 1.90694 1.52111 1.55416 1.47692 1.45948 1.58061 1.23604 1.09525 1.21533 0.99954 0.94916 0.83509 1.23583 0.93621 0.86100 0.96302 0.87933 1.23272 1.04693 0.94950 0.94679 1.22923 0.99251 0.96588 0.97797 1.22878 0.94628 0.85178 0.92561 1.22923 0.85449 0.94051 0.98742 1.45997 1.05277 1.66078 1.21476 1.19984 0.92078 1.31209 0.97905 0.93277 1.26952 0.93109 0.99400 1.08387 1.71021 1.39857 1.36077 1.14983 0.83206 0.74942 0.74497 0.73577 1.23170 1.17721 1.21755 1.23419 0.97994 0.93054 0.89913 1.88408 1.64343 1.17876 1.57991 1.21092 0.94170 0.98144 1.01655 0.90102 0.90294 0.92141 0.84115 0.83697 0.84674 0.87011 0.84779 0.75017 0.88569 0.93599 0.90349 0.86027 0.87471 0.88305 0.93728 0.90721 0.94496 0.90794 0.94495 0.86892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.92 10.01 71.24 0.71 -1.21 16 2 C -0.10 -2.17 5.88 -19.86 -0.12 -2.28 16 3 C -0.13 -2.48 9.70 22.27 0.22 -2.27 16 4 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 5 C -0.12 -2.49 9.70 22.27 0.22 -2.28 16 6 C -0.07 -1.70 4.37 -19.87 -0.09 -1.79 16 7 C -0.10 -1.92 5.83 29.10 0.17 -1.75 16 8 C 0.51 13.12 7.82 87.66 0.69 13.80 16 9 O -0.58 -19.67 16.03 -3.03 -0.05 -19.72 16 10 N -0.72 -16.27 5.54 -463.06 -2.56 -18.83 16 11 C 0.12 2.83 5.38 86.38 0.46 3.29 16 12 C 0.06 1.26 3.49 31.28 0.11 1.37 16 13 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 14 C -0.14 -2.20 6.58 32.14 0.21 -1.98 16 15 C -0.13 -2.44 6.39 31.67 0.20 -2.23 16 16 C 0.09 2.82 1.75 -10.67 -0.02 2.80 16 17 C 0.11 4.25 8.20 83.38 0.68 4.93 16 18 N -0.66 -33.09 3.70 -738.96 -2.73 -35.82 16 19 C -0.28 -17.32 11.08 84.03 0.93 -16.39 16 20 H 0.05 3.22 8.05 -2.91 -0.02 3.19 16 21 C -0.09 -5.47 5.50 84.86 0.47 -5.00 16 22 N -0.97 -65.40 13.70 21.65 0.30 -65.11 16 23 Si 1.11 57.08 25.13 68.60 1.72 58.81 16 24 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 25 H -0.25 -11.33 6.11 99.48 0.61 -10.72 16 26 H -0.29 -14.54 6.64 99.48 0.66 -13.88 16 27 C 0.08 3.33 5.19 83.48 0.43 3.76 16 28 O -0.37 -11.92 10.84 -148.98 -1.62 -13.54 16 29 C -0.13 -3.25 9.36 22.27 0.21 -3.04 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.09 8.09 -2.39 -0.02 1.07 16 32 H 0.06 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 35 H 0.14 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.11 1.99 8.09 -2.38 -0.02 1.97 16 37 H 0.13 1.66 8.08 -2.39 -0.02 1.64 16 38 H 0.41 7.93 8.47 -92.71 -0.79 7.14 16 39 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 1.35 8.05 -2.39 -0.02 1.33 16 42 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.11 1.54 8.13 -2.38 -0.02 1.52 16 44 H 0.10 1.70 7.81 -2.39 -0.02 1.69 16 45 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.08 2.43 8.13 -2.39 -0.02 2.41 16 47 H 0.25 16.52 8.73 -92.71 -0.81 15.71 16 48 H 0.07 2.76 7.50 -2.39 -0.02 2.74 16 49 H 0.04 1.67 4.70 -2.39 -0.01 1.66 16 50 H 0.11 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -86.69 404.07 0.73 -85.95 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.04 Total: 20.52 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: 5.71 Total: -12.26 kcal Atomic # 7 Polarization: -114.76 SS G_CDS: -5.00 Total: -119.76 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.66 Total: -33.26 kcal Atomic # 14 Polarization: 57.08 SS G_CDS: 1.72 Total: 58.81 kcal Total: -86.69 0.73 -85.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570233777.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.088 kcal (2) G-P(sol) polarization free energy of solvation -86.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds