Wall clock time and date at job start Wed Apr 1 2020 03:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.99544 * 2 1 4 4 C 1.38212 * 119.99558 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00166 * 0.02562 * 4 3 2 6 6 C 1.38206 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46729 * 90.00563 * 7 6 5 9 9 O 1.21282 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99831 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47153 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.28870 * 57.87128 * 12 11 10 14 14 C 1.54556 * 110.32279 * 179.97438 * 12 11 10 15 15 C 1.54770 * 104.07972 * 142.48590 * 14 12 11 16 16 C 1.53353 * 103.67095 * 359.14136 * 15 14 12 17 17 C 1.52308 * 116.12765 * 108.90768 * 16 15 14 18 18 N 1.47293 * 87.68673 * 91.18115 * 17 16 15 19 19 C 1.36927 * 135.93066 * 206.12653 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47285 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47726 * 19 18 17 22 22 N 1.31617 * 119.99817 * 6.40804 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48499 * 109.47191 * 145.01998 * 23 21 19 27 27 C 1.47293 * 88.14204 * 26.37760 * 18 17 16 28 28 O 1.43098 * 106.44592 * 337.44868 * 16 15 14 29 29 C 1.38214 * 120.00485 * 180.27072 * 2 1 3 30 30 H 1.09000 * 109.46872 * 90.00467 * 1 2 3 31 31 H 1.09003 * 109.46940 * 209.99917 * 1 2 3 32 32 H 1.09000 * 109.47712 * 330.00414 * 1 2 3 33 33 H 1.07993 * 120.00370 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99792 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.99492 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47533 * 330.00522 * 7 6 5 37 37 H 1.08997 * 109.47424 * 210.00227 * 7 6 5 38 38 H 0.97004 * 120.00504 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.46978 * 59.99403 * 11 10 8 40 40 H 1.08997 * 109.46730 * 299.99872 * 11 10 8 41 41 H 1.09006 * 110.50870 * 23.84104 * 14 12 11 42 42 H 1.08994 * 110.62498 * 261.19453 * 14 12 11 43 43 H 1.08995 * 110.58593 * 240.59081 * 15 14 12 44 44 H 1.09005 * 110.71043 * 117.74436 * 15 14 12 45 45 H 1.09001 * 113.51772 * 336.47837 * 17 16 15 46 46 H 1.09004 * 113.57760 * 205.89204 * 17 16 15 47 47 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 48 48 H 1.09006 * 113.50999 * 88.32029 * 27 18 17 49 49 H 1.08997 * 113.51416 * 218.91547 * 27 18 17 50 50 H 1.08000 * 119.99727 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1968 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5858 -2.9372 1.4206 9 8 4.1924 -2.2547 2.3427 10 7 5.2489 -4.0845 1.6664 11 6 5.4940 -4.5075 3.0475 12 6 6.2589 -5.8325 3.0470 13 1 7.1973 -5.7270 2.5026 14 6 6.5288 -6.2972 4.4961 15 6 6.3607 -7.8345 4.4361 16 6 5.9908 -8.1018 2.9720 17 6 7.0591 -8.7785 2.1231 18 7 6.4628 -10.0691 2.5082 19 6 6.9045 -11.3594 2.6310 20 1 7.9548 -11.5838 2.5167 21 6 6.0025 -12.3790 2.9022 22 7 4.7105 -12.1282 2.9165 23 14 6.6223 -14.1072 3.2469 24 1 6.5992 -14.9008 1.9920 25 1 8.0124 -14.0404 3.7649 26 1 5.7479 -14.7542 4.2579 27 6 5.1822 -9.3665 2.6975 28 8 5.4504 -6.8793 2.4611 29 6 2.1981 -1.1969 -0.0057 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0001 35 1 5.3517 0.0002 0.0005 36 1 5.2865 -2.3715 -0.5141 37 1 3.7451 -3.2615 -0.5138 38 1 5.5639 -4.6303 0.9289 39 1 4.5419 -4.6382 3.5619 40 1 6.0831 -3.7477 3.5610 41 1 5.8007 -5.8598 5.1793 42 1 7.5421 -6.0354 4.8008 43 1 5.5588 -8.1585 5.0993 44 1 7.2946 -8.3348 4.6928 45 1 8.0709 -8.6363 2.5027 46 1 6.9731 -8.5601 1.0586 47 1 4.0802 -12.8405 3.1064 48 1 4.5795 -9.3091 1.7910 49 1 4.6163 -9.7186 3.5600 50 1 1.6582 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570233778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:58 Heat of formation + Delta-G solvation = -6.218233 kcal Electronic energy + Delta-G solvation = -29134.080284 eV Core-core repulsion = 25127.701251 eV Total energy + Delta-G solvation = -4006.379033 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.33286 -39.92287 -38.95281 -36.67397 -34.52411 -33.71745 -32.27676 -32.12036 -31.85909 -29.63923 -28.02216 -27.11467 -26.69027 -24.89307 -23.86115 -22.40200 -21.99815 -21.28336 -21.16265 -20.05478 -18.86228 -17.21549 -16.81253 -16.73641 -16.46592 -16.05695 -15.81930 -15.18999 -15.02803 -14.75819 -14.68094 -14.36671 -14.01707 -13.95999 -13.52962 -13.42498 -13.29687 -13.15977 -13.05713 -12.57421 -12.40773 -12.18542 -12.09048 -11.94273 -11.79531 -11.41812 -11.34855 -11.21369 -11.17251 -11.01396 -10.90718 -10.70664 -10.47673 -10.18111 -10.08400 -9.96814 -9.62186 -9.12857 -8.96049 -8.95549 -8.78598 -8.76919 -6.96594 -5.84783 -3.16461 1.14121 1.22741 2.57486 3.07081 3.35428 3.40333 3.42991 3.63299 4.02859 4.39412 4.43584 4.55610 4.68551 4.71903 4.81942 4.89281 4.91350 5.01380 5.06084 5.08950 5.16328 5.23512 5.26807 5.29589 5.35360 5.40526 5.44098 5.46725 5.53510 5.58796 5.62302 5.73519 5.86826 5.91729 5.93623 6.04902 6.26484 6.29170 6.32443 6.36406 6.37215 6.42089 6.44164 6.56450 6.63253 6.82921 6.96352 7.11825 7.42862 7.43346 7.52315 7.88787 8.15832 8.96326 9.62863 10.55628 11.34165 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.001780 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.483050 B =15724.340149 C =16294.086764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.086 4.086 3 C -0.123 4.123 4 C -0.116 4.116 5 C -0.112 4.112 6 C -0.059 4.059 7 C -0.105 4.105 8 C 0.514 3.486 9 O -0.537 6.537 10 N -0.724 5.724 11 C 0.129 3.871 12 C 0.062 3.938 13 H 0.072 0.928 14 C -0.146 4.146 15 C -0.110 4.110 16 C 0.046 3.954 17 C 0.104 3.896 18 N -0.601 5.601 19 C -0.220 4.220 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.917 5.917 23 Si 0.914 3.086 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.179 3.821 28 O -0.354 6.354 29 C -0.105 4.105 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.406 0.594 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.038 0.962 47 H 0.255 0.745 48 H 0.037 0.963 49 H 0.066 0.934 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.382 25.106 -5.139 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.086 4.086 3 C -0.141 4.141 4 C -0.134 4.134 5 C -0.130 4.130 6 C -0.059 4.059 7 C -0.144 4.144 8 C 0.300 3.700 9 O -0.413 6.413 10 N -0.376 5.376 11 C 0.005 3.995 12 C 0.004 3.996 13 H 0.090 0.910 14 C -0.184 4.184 15 C -0.147 4.147 16 C 0.006 3.994 17 C -0.023 4.023 18 N -0.328 5.328 19 C -0.347 4.347 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.563 5.563 23 Si 0.744 3.256 24 H -0.215 1.215 25 H -0.205 1.205 26 H -0.215 1.215 27 C 0.053 3.947 28 O -0.272 6.272 29 C -0.123 4.123 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.240 0.760 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.065 0.935 48 H 0.055 0.945 49 H 0.085 0.915 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.885 25.255 -4.536 25.728 hybrid contribution 0.621 -1.362 -0.201 1.510 sum -1.264 23.893 -4.737 24.391 Atomic orbital electron populations 1.20792 0.91227 1.02877 1.02218 1.19876 0.96048 0.93094 0.99612 1.21005 0.94297 0.97395 1.01448 1.21060 0.94296 0.97816 1.00258 1.20946 0.99620 0.92009 1.00419 1.19250 0.93517 0.93597 0.99580 1.20693 1.02384 0.96379 0.94975 1.20487 0.77650 0.80697 0.91210 1.90725 1.50451 1.53909 1.46227 1.45942 1.58451 1.23897 1.09301 1.21478 1.00868 0.93934 0.83219 1.23170 0.94042 0.88147 0.94254 0.91048 1.22954 1.02329 0.97031 0.96128 1.22278 1.03026 0.93609 0.95821 1.23847 0.98237 0.84814 0.92527 1.22741 0.95643 0.87228 0.96641 1.45412 1.07231 1.02619 1.77578 1.18894 0.92590 0.80540 1.42656 0.89932 1.24853 0.95266 0.97987 1.02200 1.69848 1.00153 1.32144 1.54187 0.86078 0.77775 0.84012 0.77742 1.21540 1.20462 1.21524 1.21901 0.89840 0.83337 0.99582 1.88954 1.54360 1.14764 1.69148 1.20883 0.93403 0.97720 1.00308 0.91225 0.91445 0.91607 0.86311 0.86162 0.86338 0.87885 0.87699 0.75959 0.90679 0.90487 0.90664 0.90618 0.90490 0.90094 0.94105 0.94483 0.93469 0.94486 0.91548 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.01 36.00 0.36 -0.47 16 2 C -0.09 -0.83 5.88 -104.62 -0.62 -1.45 16 3 C -0.12 -1.12 9.70 -39.58 -0.38 -1.50 16 4 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 5 C -0.11 -1.10 9.70 -39.58 -0.38 -1.48 16 6 C -0.06 -0.61 4.37 -104.63 -0.46 -1.07 16 7 C -0.10 -0.91 5.83 -29.03 -0.17 -1.08 16 8 C 0.51 6.12 7.82 -10.99 -0.09 6.03 16 9 O -0.54 -8.53 16.03 5.56 0.09 -8.44 16 10 N -0.72 -7.92 5.52 -60.29 -0.33 -8.26 16 11 C 0.13 1.52 5.28 -4.04 -0.02 1.50 16 12 C 0.06 0.79 3.35 -25.92 -0.09 0.70 16 13 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 14 C -0.15 -1.81 6.65 -24.98 -0.17 -1.97 16 15 C -0.11 -1.78 6.50 -25.62 -0.17 -1.95 16 16 C 0.05 0.87 1.39 -91.00 -0.13 0.74 16 17 C 0.10 2.13 8.18 -7.83 -0.06 2.06 16 18 N -0.60 -15.28 3.75 -184.81 -0.69 -15.97 16 19 C -0.22 -6.08 10.73 -15.06 -0.16 -6.24 16 20 H 0.08 2.19 7.84 -52.48 -0.41 1.78 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -27.10 11.82 55.49 0.66 -26.44 16 23 Si 0.91 21.79 29.56 -169.99 -5.02 16.77 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.18 4.27 6.80 -7.68 -0.05 4.22 16 28 O -0.35 -5.91 11.12 -35.23 -0.39 -6.30 16 29 C -0.11 -1.10 9.36 -39.59 -0.37 -1.47 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.10 0.65 8.09 -51.93 -0.42 0.23 16 37 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.41 3.78 8.47 -40.82 -0.35 3.44 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.86 7.87 -51.93 -0.41 0.45 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 44 H 0.08 1.35 7.92 -51.93 -0.41 0.94 16 45 H 0.04 0.77 8.07 -51.93 -0.42 0.36 16 46 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 49 H 0.07 1.71 7.59 -51.93 -0.39 1.32 16 50 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 411.98 15.07 6.21 6.21 Total: -1.00 -33.97 411.98 -11.21 -45.18 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.28 Total: 2.37 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -3.44 Total: -5.12 kcal Atomic # 7 Polarization: -50.30 SS G_CDS: -0.37 Total: -50.67 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: -0.30 Total: -14.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.97 -11.21 -45.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570233778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.963 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds