Wall clock time and date at job start Wed Apr 1 2020 03:21:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38263 * 119.99544 * 2 1 4 4 C 1.38212 * 119.99558 * 179.97438 * 3 2 1 5 5 C 1.38261 * 120.00166 * 0.02562 * 4 3 2 6 6 C 1.38206 * 119.99854 * 359.97438 * 5 4 3 7 7 C 1.50703 * 119.99766 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46729 * 90.00563 * 7 6 5 9 9 O 1.21282 * 120.00230 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99831 * 180.02562 * 8 7 6 11 11 C 1.46508 * 120.00162 * 179.97438 * 10 8 7 12 12 C 1.52996 * 109.47153 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.28870 * 57.87128 * 12 11 10 14 14 C 1.54556 * 110.32279 * 179.97438 * 12 11 10 15 15 C 1.54770 * 104.07972 * 142.48590 * 14 12 11 16 16 C 1.53353 * 103.67095 * 359.14136 * 15 14 12 17 17 C 1.52308 * 116.12765 * 108.90768 * 16 15 14 18 18 N 1.47293 * 87.68673 * 91.18115 * 17 16 15 19 19 C 1.36927 * 135.93066 * 206.12653 * 18 17 16 20 20 H 1.08006 * 120.00208 * 6.47285 * 19 18 17 21 21 C 1.38815 * 120.00352 * 186.47726 * 19 18 17 22 22 N 1.31617 * 119.99817 * 6.40804 * 21 19 18 23 23 Si 1.86799 * 120.00085 * 186.41286 * 21 19 18 24 24 H 1.48504 * 109.47051 * 265.01587 * 23 21 19 25 25 H 1.48494 * 109.47274 * 25.01873 * 23 21 19 26 26 H 1.48499 * 109.47191 * 145.01998 * 23 21 19 27 27 C 1.47293 * 88.14204 * 26.37760 * 18 17 16 28 28 O 1.43098 * 106.44592 * 337.44868 * 16 15 14 29 29 C 1.38214 * 120.00485 * 180.27072 * 2 1 3 30 30 H 1.09000 * 109.46872 * 90.00467 * 1 2 3 31 31 H 1.09003 * 109.46940 * 209.99917 * 1 2 3 32 32 H 1.09000 * 109.47712 * 330.00414 * 1 2 3 33 33 H 1.07993 * 120.00370 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.99792 * 179.97438 * 4 3 2 35 35 H 1.08005 * 119.99492 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.47533 * 330.00522 * 7 6 5 37 37 H 1.08997 * 109.47424 * 210.00227 * 7 6 5 38 38 H 0.97004 * 120.00504 * 359.97438 * 10 8 7 39 39 H 1.09003 * 109.46978 * 59.99403 * 11 10 8 40 40 H 1.08997 * 109.46730 * 299.99872 * 11 10 8 41 41 H 1.09006 * 110.50870 * 23.84104 * 14 12 11 42 42 H 1.08994 * 110.62498 * 261.19453 * 14 12 11 43 43 H 1.08995 * 110.58593 * 240.59081 * 15 14 12 44 44 H 1.09005 * 110.71043 * 117.74436 * 15 14 12 45 45 H 1.09001 * 113.51772 * 336.47837 * 17 16 15 46 46 H 1.09004 * 113.57760 * 205.89204 * 17 16 15 47 47 H 0.96991 * 120.00313 * 180.02562 * 22 21 19 48 48 H 1.09006 * 113.50999 * 88.32029 * 27 18 17 49 49 H 1.08997 * 113.51416 * 218.91547 * 27 18 17 50 50 H 1.08000 * 119.99727 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1968 0.0005 7 6 4.3342 -2.5019 0.0000 8 6 4.5858 -2.9372 1.4206 9 8 4.1924 -2.2547 2.3427 10 7 5.2489 -4.0845 1.6664 11 6 5.4940 -4.5075 3.0475 12 6 6.2589 -5.8325 3.0470 13 1 7.1973 -5.7270 2.5026 14 6 6.5288 -6.2972 4.4961 15 6 6.3607 -7.8345 4.4361 16 6 5.9908 -8.1018 2.9720 17 6 7.0591 -8.7785 2.1231 18 7 6.4628 -10.0691 2.5082 19 6 6.9045 -11.3594 2.6310 20 1 7.9548 -11.5838 2.5167 21 6 6.0025 -12.3790 2.9022 22 7 4.7105 -12.1282 2.9165 23 14 6.6223 -14.1072 3.2469 24 1 6.5992 -14.9008 1.9920 25 1 8.0124 -14.0404 3.7649 26 1 5.7479 -14.7542 4.2579 27 6 5.1822 -9.3665 2.6975 28 8 5.4504 -6.8793 2.4611 29 6 2.1981 -1.1969 -0.0057 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 1.6582 2.1327 -0.0004 34 1 4.1203 2.1328 0.0001 35 1 5.3517 0.0002 0.0005 36 1 5.2865 -2.3715 -0.5141 37 1 3.7451 -3.2615 -0.5138 38 1 5.5639 -4.6303 0.9289 39 1 4.5419 -4.6382 3.5619 40 1 6.0831 -3.7477 3.5610 41 1 5.8007 -5.8598 5.1793 42 1 7.5421 -6.0354 4.8008 43 1 5.5588 -8.1585 5.0993 44 1 7.2946 -8.3348 4.6928 45 1 8.0709 -8.6363 2.5027 46 1 6.9731 -8.5601 1.0586 47 1 4.0802 -12.8405 3.1064 48 1 4.5795 -9.3091 1.7910 49 1 4.6163 -9.7186 3.5600 50 1 1.6582 -2.1322 -0.0105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570233778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:57 Heat of formation + Delta-G solvation = -27.330493 kcal Electronic energy + Delta-G solvation = -29134.995780 eV Core-core repulsion = 25127.701251 eV Total energy + Delta-G solvation = -4007.294530 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.55529 -40.96002 -39.79102 -38.17860 -35.63127 -34.42680 -34.13859 -33.12206 -32.86351 -30.86813 -29.28309 -28.21354 -27.60886 -26.64728 -25.19166 -23.74042 -23.04435 -22.23712 -22.07028 -20.91518 -20.44813 -18.74693 -18.10219 -17.69023 -17.35801 -17.04871 -16.92444 -16.65617 -16.36100 -15.89169 -15.76129 -15.59078 -15.48550 -14.85516 -14.70234 -14.40107 -14.29813 -14.04494 -13.97222 -13.81345 -13.67321 -13.25263 -13.17418 -13.00406 -12.85654 -12.75123 -12.71458 -12.58691 -12.41018 -12.31857 -12.02386 -11.91854 -11.91329 -11.83165 -11.60198 -11.34799 -10.95099 -10.88951 -10.41236 -10.07937 -9.67117 -9.45669 -9.00589 -7.96617 -5.30059 0.43860 0.52411 1.45746 1.47642 1.57327 1.67047 2.21668 2.42098 2.78682 2.93558 3.27104 3.46217 3.52762 3.69450 3.70030 3.77921 3.91570 4.04219 4.05817 4.09737 4.15960 4.26403 4.38281 4.44717 4.49132 4.51554 4.58776 4.63891 4.65736 4.74220 4.81417 4.82158 4.84398 4.90584 4.93856 4.99823 5.03858 5.10090 5.13835 5.16741 5.21012 5.31914 5.34409 5.42726 5.44867 5.58677 5.67497 5.72781 5.82557 6.08430 6.16519 6.57528 6.84224 7.27388 7.54257 8.53601 9.22975 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022548 B = 0.001780 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.483050 B =15724.340149 C =16294.086764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.100 4.100 3 C -0.134 4.134 4 C -0.124 4.124 5 C -0.127 4.127 6 C -0.075 4.075 7 C -0.099 4.099 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.718 5.718 11 C 0.133 3.867 12 C 0.064 3.936 13 H 0.095 0.905 14 C -0.135 4.135 15 C -0.111 4.111 16 C 0.074 3.926 17 C 0.108 3.892 18 N -0.628 5.628 19 C -0.229 4.229 20 H 0.092 0.908 21 C -0.068 4.068 22 N -0.955 5.955 23 Si 0.984 3.016 24 H -0.287 1.287 25 H -0.262 1.262 26 H -0.294 1.294 27 C 0.172 3.828 28 O -0.368 6.368 29 C -0.128 4.128 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.415 0.585 39 H 0.055 0.945 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.063 0.937 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.250 0.750 48 H 0.012 0.988 49 H 0.034 0.966 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 26.724 -5.359 27.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.100 4.100 3 C -0.152 4.152 4 C -0.141 4.141 5 C -0.145 4.145 6 C -0.075 4.075 7 C -0.138 4.138 8 C 0.301 3.699 9 O -0.460 6.460 10 N -0.370 5.370 11 C 0.009 3.991 12 C 0.006 3.994 13 H 0.113 0.887 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.033 3.967 17 C -0.018 4.018 18 N -0.356 5.356 19 C -0.357 4.357 20 H 0.110 0.890 21 C -0.261 4.261 22 N -0.604 5.604 23 Si 0.811 3.189 24 H -0.214 1.214 25 H -0.186 1.186 26 H -0.221 1.221 27 C 0.046 3.954 28 O -0.286 6.286 29 C -0.146 4.146 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.252 0.748 39 H 0.074 0.926 40 H 0.111 0.889 41 H 0.104 0.896 42 H 0.125 0.875 43 H 0.082 0.918 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.030 0.970 49 H 0.053 0.947 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.194 26.889 -4.783 27.312 hybrid contribution -0.036 -1.772 -0.174 1.781 sum 0.158 25.117 -4.956 25.602 Atomic orbital electron populations 1.20820 0.89900 1.03204 1.03044 1.20216 0.97298 0.93176 0.99317 1.21323 0.94671 0.98049 1.01123 1.21404 0.94605 0.98605 0.99531 1.21230 1.00514 0.92163 1.00567 1.19500 0.93704 0.94530 0.99779 1.20735 1.03907 0.96056 0.93088 1.21000 0.76652 0.80225 0.92027 1.90705 1.52277 1.55265 1.47790 1.45925 1.58017 1.23741 1.09340 1.21398 1.00054 0.93867 0.83755 1.23398 0.94396 0.87010 0.94573 0.88711 1.22944 1.04626 0.93586 0.96125 1.22262 1.02344 0.96757 0.93499 1.23320 0.95299 0.84087 0.93996 1.22842 0.97012 0.84783 0.97124 1.45714 1.08347 1.03430 1.78065 1.19347 0.93133 0.81815 1.41380 0.89016 1.25753 0.95429 1.02114 1.02774 1.70046 1.01406 1.32991 1.55922 0.84988 0.77785 0.78902 0.77201 1.21401 1.18649 1.22100 1.21801 0.89732 0.86689 0.97205 1.88934 1.55310 1.14796 1.69552 1.21094 0.93956 0.98211 1.01360 0.90095 0.91797 0.90585 0.84377 0.84085 0.84980 0.85068 0.86283 0.74844 0.92643 0.88922 0.89646 0.87507 0.91819 0.90229 0.91763 0.94078 0.94135 0.97042 0.94745 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.01 71.24 0.71 -0.85 16 2 C -0.10 -1.88 5.88 -19.86 -0.12 -2.00 16 3 C -0.13 -2.29 9.70 22.27 0.22 -2.07 16 4 C -0.12 -2.09 10.05 22.27 0.22 -1.86 16 5 C -0.13 -2.34 9.70 22.27 0.22 -2.12 16 6 C -0.07 -1.49 4.37 -19.87 -0.09 -1.58 16 7 C -0.10 -1.56 5.83 29.10 0.17 -1.39 16 8 C 0.51 11.59 7.82 87.66 0.69 12.28 16 9 O -0.58 -18.21 16.03 -3.04 -0.05 -18.26 16 10 N -0.72 -14.34 5.52 -463.05 -2.55 -16.90 16 11 C 0.13 2.87 5.28 86.38 0.46 3.33 16 12 C 0.06 1.43 3.35 31.12 0.10 1.54 16 13 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 14 C -0.13 -2.92 6.65 31.73 0.21 -2.70 16 15 C -0.11 -3.45 6.50 31.32 0.20 -3.25 16 16 C 0.07 2.73 1.39 -11.03 -0.02 2.71 16 17 C 0.11 4.27 8.18 83.49 0.68 4.95 16 18 N -0.63 -32.26 3.75 -740.10 -2.78 -35.04 16 19 C -0.23 -12.73 10.73 84.04 0.90 -11.83 16 20 H 0.09 4.78 7.84 -2.91 -0.02 4.76 16 21 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 22 N -0.96 -58.47 11.82 21.65 0.26 -58.21 16 23 Si 0.98 45.25 29.56 68.60 2.03 47.28 16 24 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 25 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 C 0.17 8.51 6.80 83.59 0.57 9.08 16 28 O -0.37 -11.79 11.12 -148.98 -1.66 -13.45 16 29 C -0.13 -2.67 9.36 22.27 0.21 -2.46 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.91 8.09 -2.39 -0.02 0.89 16 32 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 33 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 35 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 36 H 0.13 1.30 8.09 -2.39 -0.02 1.28 16 37 H 0.12 1.53 8.08 -2.39 -0.02 1.51 16 38 H 0.42 6.75 8.47 -92.71 -0.79 5.96 16 39 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.72 7.87 -2.38 -0.02 1.70 16 42 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.06 2.15 8.11 -2.39 -0.02 2.13 16 44 H 0.08 2.51 7.92 -2.38 -0.02 2.49 16 45 H 0.06 2.26 8.07 -2.39 -0.02 2.24 16 46 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.25 14.81 8.31 -92.72 -0.77 14.04 16 48 H 0.01 0.62 8.14 -2.38 -0.02 0.60 16 49 H 0.03 1.88 7.59 -2.39 -0.02 1.86 16 50 H 0.12 2.33 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -76.18 411.98 1.20 -74.98 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.14 Total: 21.20 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.81 Total: -1.60 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -5.07 Total: -110.15 kcal Atomic # 8 Polarization: -30.00 SS G_CDS: -1.70 Total: -31.70 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -76.18 1.20 -74.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570233778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.650 kcal (2) G-P(sol) polarization free energy of solvation -76.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds