Wall clock time and date at job start Wed Apr 1 2020 04:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 119.99815 * 2 1 4 4 C 1.38213 * 119.99891 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00450 * 0.02562 * 4 3 2 6 6 C 1.38223 * 119.99614 * 359.70139 * 5 4 3 7 7 C 1.38211 * 120.00074 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 9 9 H 1.08995 * 115.56324 * 334.31424 * 8 7 2 10 10 C 1.53000 * 117.50011 * 188.61777 * 8 7 2 11 11 C 1.53000 * 60.00108 * 252.51704 * 10 8 7 12 12 H 1.08997 * 117.49723 * 107.51665 * 11 10 8 13 13 C 1.50706 * 117.49444 * 252.51078 * 11 10 8 14 14 O 1.21281 * 119.99610 * 68.61242 * 13 11 10 15 15 N 1.34773 * 119.99695 * 248.60867 * 13 11 10 16 16 C 1.47152 * 120.98784 * 359.71900 * 15 13 11 17 17 C 1.52871 * 108.61087 * 230.50581 * 16 15 13 18 18 O 1.42969 * 109.29588 * 307.93327 * 17 16 15 19 19 C 1.42958 * 114.16677 * 62.44826 * 18 17 16 20 20 H 1.08999 * 109.50875 * 57.34627 * 19 18 17 21 21 C 1.53005 * 109.51095 * 177.49750 * 19 18 17 22 22 N 1.46503 * 109.47053 * 299.74508 * 21 19 18 23 23 C 1.36933 * 119.99899 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00050 * 0.02562 * 23 22 21 25 25 C 1.38820 * 119.99942 * 180.02562 * 23 22 21 26 26 N 1.31613 * 119.99770 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99768 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47610 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46803 * 120.00465 * 27 25 23 30 30 H 1.48503 * 109.47182 * 239.99958 * 27 25 23 31 31 C 1.47158 * 120.98039 * 180.02562 * 15 13 11 32 32 H 1.08997 * 109.48022 * 270.03000 * 1 2 3 33 33 H 1.09005 * 109.46872 * 30.03469 * 1 2 3 34 34 H 1.09007 * 109.46736 * 150.02754 * 1 2 3 35 35 H 1.08005 * 120.00063 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00359 * 179.97438 * 4 3 2 37 37 H 1.07996 * 120.00703 * 179.97438 * 5 4 3 38 38 H 1.07997 * 120.00129 * 180.30459 * 6 5 4 39 39 H 1.08999 * 117.49784 * 145.02358 * 10 8 7 40 40 H 1.09004 * 117.51820 * 359.97438 * 10 8 7 41 41 H 1.09007 * 109.67811 * 350.28645 * 16 15 13 42 42 H 1.08998 * 109.68220 * 110.82919 * 16 15 13 43 43 H 1.08997 * 109.58707 * 187.92326 * 17 16 15 44 44 H 1.08996 * 109.37194 * 67.81327 * 17 16 15 45 45 H 1.08994 * 109.47084 * 59.74307 * 21 19 18 46 46 H 1.08996 * 109.47040 * 179.74863 * 21 19 18 47 47 H 0.97001 * 120.00064 * 0.02562 * 22 21 19 48 48 H 0.97003 * 120.00207 * 179.97438 * 26 25 23 49 49 H 1.08998 * 109.68113 * 249.16969 * 31 15 13 50 50 H 1.09001 * 109.67969 * 9.71903 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.4419 -2.4662 0.4263 10 6 2.2534 -3.7847 0.2045 11 6 1.6796 -3.4533 -1.1746 12 1 2.3792 -3.1356 -1.9476 13 6 0.5069 -4.2691 -1.6546 14 8 -0.5722 -4.1572 -1.1123 15 7 0.6573 -5.1229 -2.6865 16 6 1.9551 -5.2712 -3.3641 17 6 1.7375 -5.1320 -4.8708 18 8 0.6999 -6.0251 -5.2828 19 6 -0.5737 -5.7547 -4.6924 20 1 -0.8716 -4.7317 -4.9220 21 6 -1.6131 -6.7285 -5.2513 22 7 -1.7087 -6.5602 -6.7035 23 6 -2.5801 -7.3306 -7.4262 24 1 -3.1973 -8.0619 -6.9255 25 6 -2.6702 -7.1716 -8.8023 26 7 -1.9177 -6.2807 -9.4124 27 14 -3.8595 -8.2220 -9.7879 28 1 -4.5848 -9.1397 -8.8731 29 1 -4.8349 -7.3448 -10.4840 30 1 -3.1048 -9.0162 -10.7904 31 6 -0.4731 -5.9296 -3.1732 32 1 -0.3635 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5144 34 1 -0.3633 -0.8903 -0.5134 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1327 0.0001 37 1 5.3517 0.0001 0.0005 38 1 4.1206 -2.1322 0.0112 39 1 1.7827 -4.5927 0.7645 40 1 3.3306 -3.6850 0.3383 41 1 2.6396 -4.4958 -3.0200 42 1 2.3732 -6.2538 -3.1456 43 1 2.6596 -5.3777 -5.3974 44 1 1.4480 -4.1067 -5.1011 45 1 -1.3128 -7.7510 -5.0231 46 1 -2.5829 -6.5247 -4.7975 47 1 -1.1541 -5.9036 -7.1533 48 1 -1.9804 -6.1698 -10.3740 49 1 -0.3041 -6.9798 -2.9351 50 1 -1.3959 -5.5899 -2.7028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700163747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:42 Heat of formation + Delta-G solvation = -10.476377 kcal Electronic energy + Delta-G solvation = -29649.347195 eV Core-core repulsion = 25642.783514 eV Total energy + Delta-G solvation = -4006.563680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.84454 -39.87058 -38.51835 -36.56266 -35.06276 -34.37593 -33.14911 -32.24273 -30.95439 -30.19016 -28.25567 -27.21006 -26.21647 -24.37356 -23.94762 -23.48946 -22.12037 -21.74676 -20.83304 -20.49051 -19.05923 -17.92967 -17.13403 -16.74295 -16.55570 -16.12977 -15.59833 -15.53845 -15.16101 -15.05064 -14.57260 -14.51027 -14.39509 -14.13394 -13.97688 -13.41349 -13.28246 -13.12602 -13.02614 -12.65851 -12.55688 -12.47005 -12.45485 -12.23540 -12.10837 -11.60551 -11.47420 -11.23177 -11.01184 -10.99402 -10.88753 -10.79990 -10.77890 -10.46365 -10.06908 -9.89665 -9.85959 -9.66255 -9.09666 -8.85723 -8.79392 -8.55575 -6.87533 -5.71513 -3.00075 0.95207 1.05989 2.30438 2.69919 3.27270 3.46578 3.51841 3.54364 3.70279 3.93784 4.05528 4.32131 4.42777 4.49303 4.58950 4.59491 4.65417 4.71094 4.75299 4.80218 4.94615 5.02128 5.06398 5.12336 5.19692 5.28473 5.30956 5.36150 5.40067 5.48040 5.54561 5.56158 5.61267 5.65440 5.71433 5.71729 5.75902 5.87783 5.91703 5.95789 6.17982 6.18696 6.27495 6.30821 6.35548 6.56722 6.67900 6.70292 7.21248 7.45961 7.73849 7.99977 8.46595 9.58413 10.15728 10.51801 11.51385 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.001987 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.207154 B =14087.224704 C =14270.421536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.119 4.119 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.055 4.055 8 C -0.083 4.083 9 H 0.129 0.871 10 C -0.143 4.143 11 C -0.178 4.178 12 H 0.126 0.874 13 C 0.546 3.454 14 O -0.539 6.539 15 N -0.608 5.608 16 C 0.072 3.928 17 C 0.044 3.956 18 O -0.356 6.356 19 C 0.074 3.926 20 H 0.063 0.937 21 C 0.164 3.836 22 N -0.726 5.726 23 C -0.238 4.238 24 H 0.071 0.929 25 C -0.015 4.015 26 N -0.932 5.932 27 Si 0.908 3.092 28 H -0.280 1.280 29 H -0.292 1.292 30 H -0.292 1.292 31 C 0.085 3.915 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.105 0.895 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.079 0.921 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.029 0.971 46 H 0.036 0.964 47 H 0.388 0.612 48 H 0.254 0.746 49 H 0.078 0.922 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.259 12.641 23.103 30.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.055 4.055 8 C -0.101 4.101 9 H 0.147 0.853 10 C -0.180 4.180 11 C -0.199 4.199 12 H 0.144 0.856 13 C 0.334 3.666 14 O -0.417 6.417 15 N -0.341 5.341 16 C -0.051 4.051 17 C -0.034 4.034 18 O -0.274 6.274 19 C 0.015 3.985 20 H 0.081 0.919 21 C 0.035 3.965 22 N -0.370 5.370 23 C -0.369 4.369 24 H 0.089 0.911 25 C -0.211 4.211 26 N -0.580 5.580 27 Si 0.739 3.261 28 H -0.205 1.205 29 H -0.219 1.219 30 H -0.219 1.219 31 C -0.037 4.037 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.110 0.890 42 H 0.097 0.903 43 H 0.123 0.877 44 H 0.071 0.929 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.222 0.778 48 H 0.064 0.936 49 H 0.097 0.903 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.566 12.409 23.215 30.085 hybrid contribution -0.223 -0.088 -0.751 0.788 sum 14.343 12.321 22.465 29.363 Atomic orbital electron populations 1.20892 0.90946 1.03480 1.02568 1.19773 0.96303 0.92322 0.98780 1.21053 0.94297 0.97449 1.00935 1.21148 0.94313 0.98116 1.00171 1.21096 0.99832 0.92420 1.00902 1.21045 0.93473 0.98342 1.00545 1.18973 0.93001 0.92654 1.00888 1.21098 1.00927 0.87894 1.00206 0.85307 1.23138 1.00409 0.98940 0.95550 1.22361 1.00346 1.03521 0.93659 0.85577 1.19576 0.88699 0.78983 0.79316 1.90693 1.27531 1.66704 1.56753 1.48058 1.11680 1.41624 1.32765 1.22467 0.85069 1.03278 0.94292 1.22854 0.93044 0.94823 0.92663 1.88172 1.17397 1.54047 1.67768 1.22790 0.85060 1.00493 0.90169 0.91942 1.20625 0.93200 0.95392 0.87257 1.42220 1.48425 1.46169 1.00221 1.19278 1.14199 1.13835 0.89622 0.91078 1.24751 1.00143 0.99607 0.96580 1.69686 1.42564 1.37037 1.08743 0.86102 0.80319 0.79527 0.80156 1.20546 1.21919 1.21890 1.22359 0.90431 0.95641 0.95319 0.90989 0.91459 0.90621 0.85970 0.86113 0.86062 0.85874 0.87655 0.87336 0.88998 0.90271 0.87692 0.92894 0.95353 0.94674 0.77834 0.93623 0.90346 0.88031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.33 36.00 0.34 -0.69 16 2 C -0.07 -0.65 5.88 -104.63 -0.62 -1.27 16 3 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 4 C -0.12 -0.88 10.05 -39.59 -0.40 -1.28 16 5 C -0.12 -0.90 10.05 -39.58 -0.40 -1.30 16 6 C -0.12 -0.90 9.30 -39.58 -0.37 -1.26 16 7 C -0.06 -0.49 5.61 -104.62 -0.59 -1.08 16 8 C -0.08 -0.77 4.66 -91.77 -0.43 -1.19 16 9 H 0.13 1.36 6.43 -51.93 -0.33 1.03 16 10 C -0.14 -1.08 9.56 -26.73 -0.26 -1.34 16 11 C -0.18 -1.68 4.83 -91.77 -0.44 -2.12 16 12 H 0.13 1.02 6.53 -51.93 -0.34 0.68 16 13 C 0.55 7.10 7.49 -10.98 -0.08 7.02 16 14 O -0.54 -8.78 15.73 5.56 0.09 -8.69 16 15 N -0.61 -7.74 3.03 -172.55 -0.52 -8.26 16 16 C 0.07 0.73 6.52 -3.75 -0.02 0.70 16 17 C 0.04 0.55 6.97 37.09 0.26 0.81 16 18 O -0.36 -6.26 10.14 -35.23 -0.36 -6.62 16 19 C 0.07 1.28 2.86 -26.60 -0.08 1.20 16 20 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 21 C 0.16 3.40 5.95 -4.04 -0.02 3.38 16 22 N -0.73 -19.14 5.50 -59.91 -0.33 -19.47 16 23 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 24 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 25 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 26 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 27 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 31 C 0.09 1.24 5.93 -3.55 -0.02 1.22 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 34 H 0.07 0.74 6.65 -51.92 -0.35 0.39 16 35 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.12 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.12 0.72 6.02 -52.49 -0.32 0.40 16 39 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.11 0.59 6.17 -51.93 -0.32 0.27 16 41 H 0.09 0.67 5.59 -51.92 -0.29 0.38 16 42 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 10.87 7.55 -40.82 -0.31 10.57 16 48 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 50 H 0.10 1.54 7.08 -51.93 -0.37 1.18 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -34.82 402.20 -10.78 -45.59 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -7.66 Total: 7.81 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.76 Total: -6.08 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.13 Total: -55.88 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.27 Total: -15.31 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.82 -10.78 -45.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700163747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.117 kcal (2) G-P(sol) polarization free energy of solvation -34.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds