Wall clock time and date at job start Wed Apr 1 2020 04:12:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 119.99815 * 2 1 4 4 C 1.38213 * 119.99891 * 179.97438 * 3 2 1 5 5 C 1.38252 * 120.00450 * 0.02562 * 4 3 2 6 6 C 1.38223 * 119.99614 * 359.70139 * 5 4 3 7 7 C 1.38211 * 120.00074 * 179.97438 * 2 1 3 8 8 C 1.50697 * 120.00106 * 0.02562 * 7 2 1 9 9 H 1.08995 * 115.56324 * 334.31424 * 8 7 2 10 10 C 1.53000 * 117.50011 * 188.61777 * 8 7 2 11 11 C 1.53000 * 60.00108 * 252.51704 * 10 8 7 12 12 H 1.08997 * 117.49723 * 107.51665 * 11 10 8 13 13 C 1.50706 * 117.49444 * 252.51078 * 11 10 8 14 14 O 1.21281 * 119.99610 * 68.61242 * 13 11 10 15 15 N 1.34773 * 119.99695 * 248.60867 * 13 11 10 16 16 C 1.47152 * 120.98784 * 359.71900 * 15 13 11 17 17 C 1.52871 * 108.61087 * 230.50581 * 16 15 13 18 18 O 1.42969 * 109.29588 * 307.93327 * 17 16 15 19 19 C 1.42958 * 114.16677 * 62.44826 * 18 17 16 20 20 H 1.08999 * 109.50875 * 57.34627 * 19 18 17 21 21 C 1.53005 * 109.51095 * 177.49750 * 19 18 17 22 22 N 1.46503 * 109.47053 * 299.74508 * 21 19 18 23 23 C 1.36933 * 119.99899 * 179.97438 * 22 21 19 24 24 H 1.07997 * 120.00050 * 0.02562 * 23 22 21 25 25 C 1.38820 * 119.99942 * 180.02562 * 23 22 21 26 26 N 1.31613 * 119.99770 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 119.99768 * 180.02562 * 25 23 22 28 28 H 1.48493 * 109.47610 * 0.02562 * 27 25 23 29 29 H 1.48504 * 109.46803 * 120.00465 * 27 25 23 30 30 H 1.48503 * 109.47182 * 239.99958 * 27 25 23 31 31 C 1.47158 * 120.98039 * 180.02562 * 15 13 11 32 32 H 1.08997 * 109.48022 * 270.03000 * 1 2 3 33 33 H 1.09005 * 109.46872 * 30.03469 * 1 2 3 34 34 H 1.09007 * 109.46736 * 150.02754 * 1 2 3 35 35 H 1.08005 * 120.00063 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.00359 * 179.97438 * 4 3 2 37 37 H 1.07996 * 120.00703 * 179.97438 * 5 4 3 38 38 H 1.07997 * 120.00129 * 180.30459 * 6 5 4 39 39 H 1.08999 * 117.49784 * 145.02358 * 10 8 7 40 40 H 1.09004 * 117.51820 * 359.97438 * 10 8 7 41 41 H 1.09007 * 109.67811 * 350.28645 * 16 15 13 42 42 H 1.08998 * 109.68220 * 110.82919 * 16 15 13 43 43 H 1.08997 * 109.58707 * 187.92326 * 17 16 15 44 44 H 1.08996 * 109.37194 * 67.81327 * 17 16 15 45 45 H 1.08994 * 109.47084 * 59.74307 * 21 19 18 46 46 H 1.08996 * 109.47040 * 179.74863 * 21 19 18 47 47 H 0.97001 * 120.00064 * 0.02562 * 22 21 19 48 48 H 0.97003 * 120.00207 * 179.97438 * 26 25 23 49 49 H 1.08998 * 109.68113 * 249.16969 * 31 15 13 50 50 H 1.09001 * 109.67969 * 9.71903 * 31 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2717 0.0001 0.0005 6 6 3.5806 -1.1969 0.0062 7 6 2.1980 -1.1969 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.4419 -2.4662 0.4263 10 6 2.2534 -3.7847 0.2045 11 6 1.6796 -3.4533 -1.1746 12 1 2.3792 -3.1356 -1.9476 13 6 0.5069 -4.2691 -1.6546 14 8 -0.5722 -4.1572 -1.1123 15 7 0.6573 -5.1229 -2.6865 16 6 1.9551 -5.2712 -3.3641 17 6 1.7375 -5.1320 -4.8708 18 8 0.6999 -6.0251 -5.2828 19 6 -0.5737 -5.7547 -4.6924 20 1 -0.8716 -4.7317 -4.9220 21 6 -1.6131 -6.7285 -5.2513 22 7 -1.7087 -6.5602 -6.7035 23 6 -2.5801 -7.3306 -7.4262 24 1 -3.1973 -8.0619 -6.9255 25 6 -2.6702 -7.1716 -8.8023 26 7 -1.9177 -6.2807 -9.4124 27 14 -3.8595 -8.2220 -9.7879 28 1 -4.5848 -9.1397 -8.8731 29 1 -4.8349 -7.3448 -10.4840 30 1 -3.1048 -9.0162 -10.7904 31 6 -0.4731 -5.9296 -3.1732 32 1 -0.3635 0.0005 1.0276 33 1 -0.3633 0.8897 -0.5144 34 1 -0.3633 -0.8903 -0.5134 35 1 1.6582 2.1327 -0.0004 36 1 4.1204 2.1327 0.0001 37 1 5.3517 0.0001 0.0005 38 1 4.1206 -2.1322 0.0112 39 1 1.7827 -4.5927 0.7645 40 1 3.3306 -3.6850 0.3383 41 1 2.6396 -4.4958 -3.0200 42 1 2.3732 -6.2538 -3.1456 43 1 2.6596 -5.3777 -5.3974 44 1 1.4480 -4.1067 -5.1011 45 1 -1.3128 -7.7510 -5.0231 46 1 -2.5829 -6.5247 -4.7975 47 1 -1.1541 -5.9036 -7.1533 48 1 -1.9804 -6.1698 -10.3740 49 1 -0.3041 -6.9798 -2.9351 50 1 -1.3959 -5.5899 -2.7028 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700163747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:41 Heat of formation + Delta-G solvation = -31.632062 kcal Electronic energy + Delta-G solvation = -29650.264574 eV Core-core repulsion = 25642.783514 eV Total energy + Delta-G solvation = -4007.481060 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.75521 -40.65565 -39.59495 -37.33172 -36.68827 -35.76484 -33.95581 -33.72389 -32.00517 -31.45566 -29.41899 -27.94481 -27.59833 -25.48905 -24.88715 -24.61574 -23.60055 -22.32706 -22.17314 -21.15681 -19.99467 -19.25610 -18.73707 -17.78916 -17.40311 -17.20273 -16.78548 -16.57390 -16.24275 -15.98312 -15.80231 -15.71468 -15.36245 -15.07693 -15.00025 -14.72273 -14.45753 -14.33718 -14.03633 -13.95717 -13.67794 -13.38214 -13.19958 -13.07809 -12.96037 -12.84221 -12.81935 -12.63618 -12.27265 -12.07327 -12.02663 -11.89808 -11.86487 -11.68785 -11.58394 -11.41566 -11.21818 -10.98206 -10.86972 -9.68230 -9.64709 -9.38423 -9.02298 -7.95111 -5.24811 0.36950 0.50025 1.35926 1.47123 1.48709 1.58943 1.72453 2.55495 2.63858 2.73123 3.04094 3.29932 3.38655 3.53475 3.61086 3.73464 3.88064 3.89968 3.96578 3.99464 4.01859 4.05372 4.17705 4.20073 4.24182 4.33825 4.42536 4.44469 4.48394 4.63742 4.65282 4.71321 4.74009 4.74693 4.78013 4.85940 4.91186 4.93058 4.97109 5.06498 5.11868 5.18831 5.24305 5.29697 5.47673 5.61538 5.65153 5.76407 6.14033 6.20596 6.23703 6.27390 6.99607 7.32404 8.05988 8.31115 9.28871 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.001987 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.207154 B =14087.224704 C =14270.421536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.068 4.068 8 C -0.090 4.090 9 H 0.106 0.894 10 C -0.120 4.120 11 C -0.180 4.180 12 H 0.147 0.853 13 C 0.541 3.459 14 O -0.581 6.581 15 N -0.610 5.610 16 C 0.077 3.923 17 C 0.036 3.964 18 O -0.387 6.387 19 C 0.088 3.912 20 H 0.045 0.955 21 C 0.160 3.840 22 N -0.740 5.740 23 C -0.247 4.247 24 H 0.079 0.921 25 C -0.078 4.078 26 N -0.970 5.970 27 Si 0.978 3.022 28 H -0.265 1.265 29 H -0.293 1.293 30 H -0.292 1.292 31 C 0.095 3.905 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.055 0.945 35 H 0.132 0.868 36 H 0.140 0.860 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.101 0.899 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.047 0.953 45 H 0.032 0.968 46 H 0.042 0.958 47 H 0.375 0.625 48 H 0.251 0.749 49 H 0.088 0.912 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.576 12.487 24.276 32.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.143 4.143 5 C -0.146 4.146 6 C -0.136 4.136 7 C -0.068 4.068 8 C -0.109 4.109 9 H 0.124 0.876 10 C -0.157 4.157 11 C -0.201 4.201 12 H 0.164 0.836 13 C 0.331 3.669 14 O -0.461 6.461 15 N -0.342 5.342 16 C -0.045 4.045 17 C -0.041 4.041 18 O -0.305 6.305 19 C 0.029 3.971 20 H 0.063 0.937 21 C 0.033 3.967 22 N -0.383 5.383 23 C -0.378 4.378 24 H 0.096 0.904 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.807 3.193 28 H -0.189 1.189 29 H -0.220 1.220 30 H -0.219 1.219 31 C -0.029 4.029 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.150 0.850 36 H 0.158 0.842 37 H 0.163 0.837 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.158 0.842 41 H 0.146 0.854 42 H 0.112 0.888 43 H 0.147 0.853 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.207 0.793 48 H 0.060 0.940 49 H 0.106 0.894 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 16.903 12.242 24.430 32.131 hybrid contribution -0.902 0.015 -1.053 1.387 sum 16.000 12.257 23.377 30.866 Atomic orbital electron populations 1.20836 0.91338 1.02708 1.02635 1.19949 0.96384 0.93163 0.99921 1.21263 0.95025 0.97538 1.01051 1.21468 0.94107 0.99320 0.99452 1.21444 1.01116 0.92107 0.99948 1.21305 0.92841 0.99615 0.99862 1.19039 0.93773 0.92159 1.01796 1.20993 1.00554 0.89043 1.00302 0.87594 1.23277 1.01815 0.97360 0.93228 1.22339 0.99412 1.03478 0.94839 0.83561 1.20239 0.89227 0.78647 0.78778 1.90674 1.29460 1.67892 1.58115 1.48161 1.12038 1.41187 1.32819 1.22632 0.84232 1.05504 0.92115 1.23177 0.92380 0.93739 0.94843 1.88107 1.18018 1.55615 1.68799 1.22437 0.84713 0.98201 0.91722 0.93707 1.20771 0.94856 0.96530 0.84537 1.42408 1.47877 1.45624 1.02359 1.19712 1.14158 1.13706 0.90242 0.90352 1.25642 1.02329 1.01289 0.97775 1.69849 1.44513 1.38947 1.08734 0.85004 0.77991 0.77870 0.78455 1.18888 1.21968 1.21896 1.22074 0.91193 0.96554 0.93045 0.90587 0.90868 0.92635 0.84969 0.84192 0.83742 0.83660 0.88063 0.84236 0.85421 0.88765 0.85298 0.93435 0.95025 0.94034 0.79304 0.93987 0.89355 0.89146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.33 71.23 0.66 -1.42 16 2 C -0.09 -1.68 5.88 -19.87 -0.12 -1.79 16 3 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 4 C -0.13 -1.57 10.05 22.27 0.22 -1.35 16 5 C -0.13 -1.47 10.05 22.27 0.22 -1.24 16 6 C -0.12 -1.48 9.30 22.27 0.21 -1.27 16 7 C -0.07 -1.12 5.61 -19.87 -0.11 -1.23 16 8 C -0.09 -1.59 4.66 -11.54 -0.05 -1.65 16 9 H 0.11 2.36 6.43 -2.39 -0.02 2.34 16 10 C -0.12 -1.49 9.56 30.59 0.29 -1.20 16 11 C -0.18 -3.04 4.83 -11.54 -0.06 -3.10 16 12 H 0.15 1.85 6.53 -2.39 -0.02 1.84 16 13 C 0.54 13.74 7.49 87.66 0.66 14.39 16 14 O -0.58 -19.44 15.73 -3.03 -0.05 -19.49 16 15 N -0.61 -14.85 3.03 -818.22 -2.48 -17.33 16 16 C 0.08 1.35 6.52 86.21 0.56 1.91 16 17 C 0.04 0.84 6.97 71.94 0.50 1.34 16 18 O -0.39 -13.55 10.14 -148.98 -1.51 -15.06 16 19 C 0.09 3.11 2.86 30.68 0.09 3.20 16 20 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 21 C 0.16 6.77 5.95 86.38 0.51 7.28 16 22 N -0.74 -39.88 5.50 -343.45 -1.89 -41.77 16 23 C -0.25 -14.30 9.99 84.04 0.84 -13.46 16 24 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 25 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 26 N -0.97 -61.25 13.06 21.65 0.28 -60.96 16 27 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 28 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 29 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 30 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 31 C 0.09 2.76 5.93 86.34 0.51 3.27 16 32 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.13 8.09 -2.38 -0.02 1.11 16 34 H 0.05 1.18 6.65 -2.38 -0.02 1.17 16 35 H 0.13 1.58 8.06 -2.91 -0.02 1.56 16 36 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 38 H 0.15 1.05 6.02 -2.91 -0.02 1.03 16 39 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.14 0.87 6.17 -2.38 -0.01 0.86 16 41 H 0.13 1.33 5.59 -2.38 -0.01 1.32 16 42 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.13 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.38 21.75 7.55 -92.71 -0.70 21.05 16 48 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 49 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 50 H 0.09 2.83 7.08 -2.39 -0.02 2.81 16 Total: -1.00 -77.35 402.20 2.27 -75.08 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: 0.25 Total: 32.50 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: 5.63 Total: -2.26 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.08 Total: -120.06 kcal Atomic # 8 Polarization: -32.99 SS G_CDS: -1.56 Total: -34.55 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -77.35 2.27 -75.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700163747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.451 kcal (2) G-P(sol) polarization free energy of solvation -77.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds