Wall clock time and date at job start Wed Apr 1 2020 04:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 119.99758 * 2 1 4 4 C 1.38215 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99742 * 359.79707 * 4 3 2 6 6 C 1.38215 * 120.00240 * 0.47727 * 5 4 3 7 7 C 1.38209 * 120.00259 * 180.02562 * 2 1 3 8 8 C 1.50698 * 119.99951 * 359.97438 * 7 2 1 9 9 H 1.09005 * 115.54806 * 334.43634 * 8 7 2 10 10 C 1.52995 * 117.50112 * 188.77022 * 8 7 2 11 11 C 1.52999 * 117.50355 * 120.10766 * 8 7 2 12 12 H 1.08994 * 117.49624 * 359.97438 * 11 8 7 13 13 C 1.50698 * 117.49728 * 214.98070 * 11 8 7 14 14 O 1.21274 * 120.00475 * 359.97438 * 13 11 8 15 15 N 1.34781 * 119.99641 * 180.02562 * 13 11 8 16 16 C 1.46499 * 119.99946 * 175.00675 * 15 13 11 17 17 C 1.53002 * 112.94113 * 293.07032 * 16 15 13 18 18 C 1.52991 * 109.47661 * 304.08450 * 17 16 15 19 19 O 1.42891 * 109.47394 * 175.17223 * 18 17 16 20 20 C 1.53944 * 113.74160 * 161.34038 * 16 15 13 21 21 N 1.47581 * 86.11766 * 222.04523 * 20 16 15 22 22 C 1.36935 * 134.49325 * 204.64410 * 21 20 16 23 23 H 1.08005 * 119.99798 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00298 * 359.97438 * 22 21 20 25 25 N 1.31624 * 119.99578 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00206 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47384 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47390 * 119.99895 * 26 24 22 29 29 H 1.48501 * 109.46897 * 239.99688 * 26 24 22 30 30 C 1.47584 * 91.01435 * 24.64007 * 21 20 16 31 31 H 1.09000 * 109.47250 * 269.97776 * 1 2 3 32 32 H 1.08999 * 109.47454 * 29.98071 * 1 2 3 33 33 H 1.09003 * 109.47174 * 149.97424 * 1 2 3 34 34 H 1.08002 * 120.00477 * 0.02562 * 3 2 1 35 35 H 1.08004 * 119.99968 * 180.02562 * 4 3 2 36 36 H 1.08005 * 120.00040 * 180.25300 * 5 4 3 37 37 H 1.07994 * 119.99960 * 179.76606 * 6 5 4 38 38 H 1.09004 * 117.49978 * 359.97438 * 10 8 7 39 39 H 1.09005 * 117.50383 * 145.01912 * 10 8 7 40 40 H 0.97003 * 120.00438 * 354.99665 * 15 13 11 41 41 H 1.09001 * 109.47129 * 64.09083 * 17 16 15 42 42 H 1.09004 * 109.46731 * 184.08077 * 17 16 15 43 43 H 1.09008 * 109.47079 * 295.17461 * 18 17 16 44 44 H 1.09002 * 109.46991 * 55.16693 * 18 17 16 45 45 H 0.96704 * 114.00478 * 180.02562 * 19 18 17 46 46 H 1.08997 * 113.77190 * 336.34367 * 20 16 15 47 47 H 1.09005 * 113.77239 * 107.74609 * 20 16 15 48 48 H 0.96999 * 119.99463 * 180.02562 * 25 24 22 49 49 H 1.08995 * 113.76682 * 221.05713 * 30 21 20 50 50 H 1.08999 * 113.86805 * 89.67791 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0053 6 6 3.5806 -1.1969 -0.0004 7 6 2.1980 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4414 -2.4657 0.4242 10 6 2.2530 -3.7844 0.2058 11 6 1.6804 -3.4540 -1.1748 12 1 2.3802 -3.1361 -1.9476 13 6 0.5081 -4.2700 -1.6553 14 8 -0.5713 -4.1580 -1.1140 15 7 0.6596 -5.1250 -2.6861 16 6 -0.4484 -5.9975 -3.0829 17 6 -0.7876 -7.0493 -2.0249 18 6 0.4630 -7.8688 -1.7010 19 8 0.1757 -8.7750 -0.6341 20 6 -0.3086 -6.5686 -4.5056 21 7 -1.7494 -6.2850 -4.6529 22 6 -2.7520 -6.7912 -5.4363 23 1 -3.7548 -6.3995 -5.3500 24 6 -2.4795 -7.8079 -6.3414 25 7 -1.2575 -8.2856 -6.4461 26 14 -3.8470 -8.4979 -7.4106 27 1 -5.1187 -7.7958 -7.1021 28 1 -3.5052 -8.2979 -8.8417 29 1 -4.0044 -9.9491 -7.1374 30 6 -1.6758 -5.2368 -3.6166 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1328 0.0010 36 1 5.3516 0.0001 0.0099 37 1 4.1206 -2.1321 -0.0005 38 1 3.3300 -3.6843 0.3411 39 1 1.7816 -4.5921 0.7659 40 1 1.5021 -5.1627 -3.1653 41 1 -1.1418 -6.5542 -1.1207 42 1 -1.5663 -7.7100 -2.4060 43 1 0.7674 -8.4315 -2.5836 44 1 1.2690 -7.1988 -1.4015 45 1 0.9255 -9.3280 -0.3750 46 1 0.3259 -5.9699 -5.1591 47 1 -0.0652 -7.6308 -4.5308 48 1 -1.0671 -8.9958 -7.0788 49 1 -2.5239 -5.2357 -2.9319 50 1 -1.4432 -4.2461 -4.0071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700496659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:50 Heat of formation + Delta-G solvation = 15.599638 kcal Electronic energy + Delta-G solvation = -30213.731014 eV Core-core repulsion = 26208.298075 eV Total energy + Delta-G solvation = -4005.432939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.50455 -39.67004 -38.15754 -36.40610 -36.15223 -33.63198 -33.02472 -31.90745 -30.79227 -30.28441 -27.21741 -27.02742 -25.05551 -24.81564 -24.09705 -23.03933 -21.61696 -21.55926 -20.49215 -19.75057 -18.60922 -17.53929 -17.14674 -16.78349 -16.57334 -15.61284 -15.50380 -15.05852 -14.95272 -14.73367 -14.58447 -14.22502 -14.07427 -13.91267 -13.68908 -13.52785 -13.27340 -12.68365 -12.47501 -12.41198 -12.33101 -12.09941 -11.95499 -11.72348 -11.60767 -11.34227 -11.09487 -11.08225 -10.95270 -10.83679 -10.76802 -10.68999 -10.55451 -10.13258 -9.90650 -9.69586 -9.59840 -9.24321 -8.96924 -8.90563 -8.65783 -8.57520 -6.93262 -5.81460 -3.13127 1.08236 1.17353 2.70481 3.28522 3.38471 3.44170 3.46363 3.52756 3.93166 4.37187 4.46071 4.47904 4.56817 4.66333 4.72323 4.77860 4.81532 4.98645 5.07854 5.14105 5.21549 5.25378 5.33806 5.45039 5.47029 5.51194 5.52743 5.52970 5.68992 5.71733 5.75589 5.83758 5.87346 5.92756 5.93917 6.04740 6.29244 6.31126 6.34035 6.47148 6.49332 6.52564 6.65737 6.73900 6.79703 6.84155 7.10839 7.30921 7.47845 7.84670 7.87955 7.94074 8.55355 9.01075 9.66796 10.53333 11.36255 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.002466 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.337751 B =11353.041679 C =12258.839207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.072 4.072 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.125 4.125 6 C -0.117 4.117 7 C -0.052 4.052 8 C -0.086 4.086 9 H 0.129 0.871 10 C -0.146 4.146 11 C -0.175 4.175 12 H 0.122 0.878 13 C 0.541 3.459 14 O -0.534 6.534 15 N -0.711 5.711 16 C 0.123 3.877 17 C -0.094 4.094 18 C 0.082 3.918 19 O -0.575 6.575 20 C 0.167 3.833 21 N -0.605 5.605 22 C -0.218 4.218 23 H 0.083 0.917 24 C -0.008 4.008 25 N -0.923 5.923 26 Si 0.913 3.087 27 H -0.279 1.279 28 H -0.291 1.291 29 H -0.290 1.290 30 C 0.130 3.870 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.397 0.603 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.372 0.628 46 H 0.030 0.970 47 H 0.082 0.918 48 H 0.253 0.747 49 H 0.051 0.949 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.001 13.378 14.422 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.143 4.143 6 C -0.134 4.134 7 C -0.052 4.052 8 C -0.105 4.105 9 H 0.147 0.853 10 C -0.183 4.183 11 C -0.196 4.196 12 H 0.140 0.860 13 C 0.326 3.674 14 O -0.411 6.411 15 N -0.362 5.362 16 C 0.037 3.963 17 C -0.132 4.132 18 C 0.004 3.996 19 O -0.380 6.380 20 C 0.040 3.960 21 N -0.332 5.332 22 C -0.345 4.345 23 H 0.101 0.899 24 C -0.204 4.204 25 N -0.570 5.570 26 Si 0.744 3.256 27 H -0.204 1.204 28 H -0.218 1.218 29 H -0.216 1.216 30 C 0.003 3.997 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.123 0.877 40 H 0.231 0.769 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.217 0.783 46 H 0.048 0.952 47 H 0.100 0.900 48 H 0.063 0.937 49 H 0.070 0.930 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 12.444 13.504 14.502 23.399 hybrid contribution 0.540 -0.477 -1.122 1.334 sum 12.984 13.027 13.380 22.745 Atomic orbital electron populations 1.20889 0.90927 1.03512 1.02541 1.19778 0.96327 0.92313 0.98823 1.21037 0.94269 0.97419 1.01097 1.21124 0.94316 0.98031 1.00523 1.21083 0.99747 0.92459 1.01050 1.21053 0.93556 0.98306 1.00531 1.19021 0.92986 0.92829 1.00345 1.21076 1.00846 0.87707 1.00824 0.85330 1.23121 1.00098 0.98895 0.96163 1.22413 1.00546 1.03245 0.93410 0.86026 1.19511 0.88405 0.79505 0.79931 1.90684 1.27028 1.66354 1.57043 1.46118 1.17213 1.39368 1.33465 1.22948 0.87363 0.90634 0.95354 1.21314 0.97559 0.96101 0.98243 1.22140 0.97563 0.91040 0.88856 1.86496 1.41255 1.55103 1.55107 1.22534 0.86733 1.00174 0.86510 1.45698 1.04802 1.38512 1.44162 1.19055 0.88291 1.13760 1.13402 0.89947 1.24775 0.96819 0.99173 0.99661 1.69798 1.18160 1.29974 1.39084 0.86020 0.80887 0.78709 0.80015 1.20403 1.21764 1.21647 1.22772 0.94733 0.92193 0.89969 0.91056 0.91596 0.90411 0.86080 0.86241 0.86178 0.85864 0.87659 0.87718 0.76903 0.91037 0.89191 0.93262 0.94460 0.78266 0.95222 0.90035 0.93663 0.93034 0.94696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.33 36.00 0.34 -0.84 16 2 C -0.07 -0.74 5.88 -104.63 -0.62 -1.36 16 3 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 4 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 5 C -0.13 -1.04 10.05 -39.58 -0.40 -1.44 16 6 C -0.12 -1.05 9.30 -39.58 -0.37 -1.42 16 7 C -0.05 -0.54 5.61 -104.63 -0.59 -1.12 16 8 C -0.09 -0.93 4.66 -91.78 -0.43 -1.36 16 9 H 0.13 1.59 6.43 -51.93 -0.33 1.25 16 10 C -0.15 -1.37 9.57 -26.70 -0.26 -1.62 16 11 C -0.17 -1.94 5.83 -91.74 -0.53 -2.47 16 12 H 0.12 1.17 8.14 -51.93 -0.42 0.74 16 13 C 0.54 8.06 7.28 -10.98 -0.08 7.98 16 14 O -0.53 -9.86 14.70 5.56 0.08 -9.78 16 15 N -0.71 -10.58 4.46 -49.07 -0.22 -10.80 16 16 C 0.12 2.32 0.67 -134.03 -0.09 2.23 16 17 C -0.09 -1.79 4.86 -26.73 -0.13 -1.92 16 18 C 0.08 1.30 6.86 37.15 0.25 1.55 16 19 O -0.58 -8.96 13.66 -35.23 -0.48 -9.44 16 20 C 0.17 3.73 6.72 -2.98 -0.02 3.71 16 21 N -0.61 -15.45 3.54 -177.71 -0.63 -16.08 16 22 C -0.22 -6.09 10.70 -15.06 -0.16 -6.25 16 23 H 0.08 2.26 7.83 -52.48 -0.41 1.85 16 24 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 25 N -0.92 -26.67 11.38 55.49 0.63 -26.04 16 26 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 C 0.13 2.86 7.41 -2.97 -0.02 2.83 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 33 H 0.08 0.87 6.65 -51.93 -0.35 0.52 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 36 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 37 H 0.12 0.90 6.03 -52.49 -0.32 0.58 16 38 H 0.11 0.76 6.18 -51.93 -0.32 0.43 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.40 4.84 8.72 -40.82 -0.36 4.48 16 41 H 0.07 1.43 7.24 -51.93 -0.38 1.06 16 42 H 0.09 1.99 8.02 -51.93 -0.42 1.58 16 43 H 0.05 0.80 7.62 -51.92 -0.40 0.40 16 44 H 0.04 0.52 7.52 -51.93 -0.39 0.13 16 45 H 0.37 3.78 9.12 45.56 0.42 4.19 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 1.99 6.60 -51.93 -0.34 1.65 16 48 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 49 H 0.05 1.16 8.10 -51.93 -0.42 0.74 16 50 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 405.91 15.07 6.12 6.12 Total: -1.00 -33.64 405.91 -10.44 -44.09 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.95 Total: 9.53 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -3.98 Total: -4.70 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: -0.22 Total: -52.92 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.40 Total: -19.21 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.64 -10.44 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700496659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.688 kcal (2) G-P(sol) polarization free energy of solvation -33.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds