Wall clock time and date at job start Wed Apr 1 2020 04:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38259 * 119.99758 * 2 1 4 4 C 1.38215 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38258 * 119.99742 * 359.79707 * 4 3 2 6 6 C 1.38215 * 120.00240 * 0.47727 * 5 4 3 7 7 C 1.38209 * 120.00259 * 180.02562 * 2 1 3 8 8 C 1.50698 * 119.99951 * 359.97438 * 7 2 1 9 9 H 1.09005 * 115.54806 * 334.43634 * 8 7 2 10 10 C 1.52995 * 117.50112 * 188.77022 * 8 7 2 11 11 C 1.52999 * 117.50355 * 120.10766 * 8 7 2 12 12 H 1.08994 * 117.49624 * 359.97438 * 11 8 7 13 13 C 1.50698 * 117.49728 * 214.98070 * 11 8 7 14 14 O 1.21274 * 120.00475 * 359.97438 * 13 11 8 15 15 N 1.34781 * 119.99641 * 180.02562 * 13 11 8 16 16 C 1.46499 * 119.99946 * 175.00675 * 15 13 11 17 17 C 1.53002 * 112.94113 * 293.07032 * 16 15 13 18 18 C 1.52991 * 109.47661 * 304.08450 * 17 16 15 19 19 O 1.42891 * 109.47394 * 175.17223 * 18 17 16 20 20 C 1.53944 * 113.74160 * 161.34038 * 16 15 13 21 21 N 1.47581 * 86.11766 * 222.04523 * 20 16 15 22 22 C 1.36935 * 134.49325 * 204.64410 * 21 20 16 23 23 H 1.08005 * 119.99798 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00298 * 359.97438 * 22 21 20 25 25 N 1.31624 * 119.99578 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00206 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47384 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47390 * 119.99895 * 26 24 22 29 29 H 1.48501 * 109.46897 * 239.99688 * 26 24 22 30 30 C 1.47584 * 91.01435 * 24.64007 * 21 20 16 31 31 H 1.09000 * 109.47250 * 269.97776 * 1 2 3 32 32 H 1.08999 * 109.47454 * 29.98071 * 1 2 3 33 33 H 1.09003 * 109.47174 * 149.97424 * 1 2 3 34 34 H 1.08002 * 120.00477 * 0.02562 * 3 2 1 35 35 H 1.08004 * 119.99968 * 180.02562 * 4 3 2 36 36 H 1.08005 * 120.00040 * 180.25300 * 5 4 3 37 37 H 1.07994 * 119.99960 * 179.76606 * 6 5 4 38 38 H 1.09004 * 117.49978 * 359.97438 * 10 8 7 39 39 H 1.09005 * 117.50383 * 145.01912 * 10 8 7 40 40 H 0.97003 * 120.00438 * 354.99665 * 15 13 11 41 41 H 1.09001 * 109.47129 * 64.09083 * 17 16 15 42 42 H 1.09004 * 109.46731 * 184.08077 * 17 16 15 43 43 H 1.09008 * 109.47079 * 295.17461 * 18 17 16 44 44 H 1.09002 * 109.46991 * 55.16693 * 18 17 16 45 45 H 0.96704 * 114.00478 * 180.02562 * 19 18 17 46 46 H 1.08997 * 113.77190 * 336.34367 * 20 16 15 47 47 H 1.09005 * 113.77239 * 107.74609 * 20 16 15 48 48 H 0.96999 * 119.99463 * 180.02562 * 25 24 22 49 49 H 1.08995 * 113.76682 * 221.05713 * 30 21 20 50 50 H 1.08999 * 113.86805 * 89.67791 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1974 0.0005 5 6 4.2716 0.0001 0.0053 6 6 3.5806 -1.1969 -0.0004 7 6 2.1980 -1.1969 -0.0005 8 6 1.4446 -2.5020 -0.0005 9 1 0.4414 -2.4657 0.4242 10 6 2.2530 -3.7844 0.2058 11 6 1.6804 -3.4540 -1.1748 12 1 2.3802 -3.1361 -1.9476 13 6 0.5081 -4.2700 -1.6553 14 8 -0.5713 -4.1580 -1.1140 15 7 0.6596 -5.1250 -2.6861 16 6 -0.4484 -5.9975 -3.0829 17 6 -0.7876 -7.0493 -2.0249 18 6 0.4630 -7.8688 -1.7010 19 8 0.1757 -8.7750 -0.6341 20 6 -0.3086 -6.5686 -4.5056 21 7 -1.7494 -6.2850 -4.6529 22 6 -2.7520 -6.7912 -5.4363 23 1 -3.7548 -6.3995 -5.3500 24 6 -2.4795 -7.8079 -6.3414 25 7 -1.2575 -8.2856 -6.4461 26 14 -3.8470 -8.4979 -7.4106 27 1 -5.1187 -7.7958 -7.1021 28 1 -3.5052 -8.2979 -8.8417 29 1 -4.0044 -9.9491 -7.1374 30 6 -1.6758 -5.2368 -3.6166 31 1 -0.3634 -0.0004 1.0277 32 1 -0.3634 0.8901 -0.5135 33 1 -0.3634 -0.8898 -0.5142 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1328 0.0010 36 1 5.3516 0.0001 0.0099 37 1 4.1206 -2.1321 -0.0005 38 1 3.3300 -3.6843 0.3411 39 1 1.7816 -4.5921 0.7659 40 1 1.5021 -5.1627 -3.1653 41 1 -1.1418 -6.5542 -1.1207 42 1 -1.5663 -7.7100 -2.4060 43 1 0.7674 -8.4315 -2.5836 44 1 1.2690 -7.1988 -1.4015 45 1 0.9255 -9.3280 -0.3750 46 1 0.3259 -5.9699 -5.1591 47 1 -0.0652 -7.6308 -4.5308 48 1 -1.0671 -8.9958 -7.0788 49 1 -2.5239 -5.2357 -2.9319 50 1 -1.4432 -4.2461 -4.0071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700496659.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:49 Heat of formation + Delta-G solvation = -6.501401 kcal Electronic energy + Delta-G solvation = -30214.689387 eV Core-core repulsion = 26208.298075 eV Total energy + Delta-G solvation = -4006.391312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.67462 -40.71935 -39.46236 -37.70641 -37.14736 -35.26445 -33.80088 -33.66609 -31.95650 -31.37488 -29.06953 -27.78628 -26.87400 -26.07959 -24.86273 -24.46163 -23.23610 -22.28864 -21.47637 -20.77795 -20.13887 -18.80142 -18.57615 -18.34350 -17.47067 -17.04240 -16.70838 -16.45473 -16.15195 -15.90769 -15.72428 -15.48150 -15.38335 -15.14560 -14.77814 -14.63489 -14.40997 -13.92025 -13.83664 -13.48649 -13.33842 -13.26004 -13.15355 -13.02827 -12.94144 -12.82020 -12.78449 -12.59181 -12.27675 -12.04097 -12.03121 -11.81475 -11.74814 -11.54723 -11.40722 -11.35618 -10.99815 -10.89184 -10.65421 -10.05695 -9.62814 -9.34851 -8.98291 -7.95158 -5.28371 0.40726 0.52606 1.44836 1.45717 1.55885 1.57452 2.08687 2.47384 2.71909 3.11944 3.13553 3.24740 3.35563 3.59957 3.60606 3.74479 3.90291 3.99382 4.04984 4.12019 4.17987 4.23324 4.28328 4.31648 4.33831 4.47360 4.48536 4.68786 4.69917 4.70350 4.77173 4.78467 4.81575 4.83810 4.98584 5.00852 5.02844 5.11814 5.15695 5.17708 5.20720 5.22257 5.33118 5.45591 5.64510 5.67149 5.70998 5.80250 5.87847 6.16806 6.65557 6.88957 6.91923 7.34598 7.54489 8.47885 9.21835 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015532 B = 0.002466 C = 0.002284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.337751 B =11353.041679 C =12258.839207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.066 4.066 8 C -0.090 4.090 9 H 0.105 0.895 10 C -0.124 4.124 11 C -0.175 4.175 12 H 0.145 0.855 13 C 0.540 3.460 14 O -0.573 6.573 15 N -0.701 5.701 16 C 0.156 3.844 17 C -0.087 4.087 18 C 0.092 3.908 19 O -0.592 6.592 20 C 0.173 3.827 21 N -0.632 5.632 22 C -0.237 4.237 23 H 0.078 0.922 24 C -0.058 4.058 25 N -0.946 5.946 26 Si 0.978 3.022 27 H -0.271 1.271 28 H -0.288 1.288 29 H -0.289 1.289 30 C 0.127 3.873 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.055 0.945 34 H 0.133 0.867 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.098 0.902 40 H 0.415 0.585 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.046 0.954 44 H 0.065 0.935 45 H 0.397 0.603 46 H 0.033 0.967 47 H 0.060 0.940 48 H 0.252 0.748 49 H 0.038 0.962 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 14.194 15.109 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.144 4.144 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.066 4.066 8 C -0.109 4.109 9 H 0.123 0.877 10 C -0.161 4.161 11 C -0.196 4.196 12 H 0.162 0.838 13 C 0.328 3.672 14 O -0.453 6.453 15 N -0.354 5.354 16 C 0.069 3.931 17 C -0.126 4.126 18 C 0.015 3.985 19 O -0.401 6.401 20 C 0.047 3.953 21 N -0.359 5.359 22 C -0.365 4.365 23 H 0.096 0.904 24 C -0.252 4.252 25 N -0.595 5.595 26 Si 0.806 3.194 27 H -0.195 1.195 28 H -0.215 1.215 29 H -0.216 1.216 30 C 0.001 3.999 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.074 0.926 34 H 0.151 0.849 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.161 0.839 38 H 0.155 0.845 39 H 0.116 0.884 40 H 0.252 0.748 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.247 0.753 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 15.158 14.333 15.209 25.817 hybrid contribution -0.300 -0.657 -1.260 1.452 sum 14.858 13.676 13.949 24.543 Atomic orbital electron populations 1.20831 0.91321 1.02760 1.02578 1.19950 0.96393 0.93142 0.99929 1.21262 0.95003 0.97501 1.01047 1.21463 0.94105 0.99252 0.99566 1.21436 1.01075 0.92110 1.00040 1.21297 0.92911 0.99595 0.99961 1.19064 0.93763 0.92264 1.01558 1.20969 1.00417 0.88923 1.00600 0.87678 1.23251 1.01586 0.97427 0.93796 1.22330 0.99400 1.03229 0.94673 0.83765 1.20167 0.89053 0.79005 0.78971 1.90680 1.29012 1.67421 1.58142 1.45877 1.16728 1.38834 1.33917 1.22182 0.87106 0.90130 0.93711 1.21166 0.98331 0.95831 0.97304 1.21948 0.96131 0.91258 0.89181 1.86434 1.43341 1.55590 1.54706 1.22416 0.85212 0.99103 0.88555 1.45985 1.05814 1.39572 1.44498 1.19335 0.89035 1.14202 1.13930 0.90427 1.25555 0.99144 0.99542 1.00948 1.69943 1.19651 1.30295 1.39567 0.85022 0.78577 0.77711 0.78064 1.19526 1.21509 1.21601 1.22833 0.95962 0.91935 0.89189 0.90710 0.90780 0.92614 0.84861 0.84093 0.83780 0.83880 0.84496 0.88367 0.74804 0.92114 0.93030 0.93563 0.91660 0.75319 0.94920 0.92142 0.93923 0.94407 0.94498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.33 71.23 0.66 -1.66 16 2 C -0.09 -1.86 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.16 9.70 22.27 0.22 -1.95 16 4 C -0.13 -1.76 10.05 22.27 0.22 -1.54 16 5 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 6 C -0.12 -1.79 9.30 22.27 0.21 -1.59 16 7 C -0.07 -1.27 5.61 -19.87 -0.11 -1.38 16 8 C -0.09 -1.87 4.66 -11.54 -0.05 -1.92 16 9 H 0.11 2.68 6.43 -2.38 -0.02 2.67 16 10 C -0.12 -1.98 9.57 30.62 0.29 -1.69 16 11 C -0.18 -3.54 5.83 -11.52 -0.07 -3.61 16 12 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 13 C 0.54 15.70 7.28 87.66 0.64 16.34 16 14 O -0.57 -21.54 14.70 -3.01 -0.04 -21.58 16 15 N -0.70 -20.18 4.46 -427.56 -1.91 -22.09 16 16 C 0.16 5.97 0.67 5.36 0.00 5.97 16 17 C -0.09 -3.41 4.86 30.59 0.15 -3.26 16 18 C 0.09 2.86 6.86 71.98 0.49 3.35 16 19 O -0.59 -17.68 13.66 -148.98 -2.03 -19.72 16 20 C 0.17 7.88 6.72 86.48 0.58 8.46 16 21 N -0.63 -33.30 3.54 -716.14 -2.54 -35.84 16 22 C -0.24 -13.63 10.70 84.03 0.90 -12.74 16 23 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 24 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 25 N -0.95 -55.57 11.38 21.65 0.25 -55.33 16 26 Si 0.98 46.08 29.55 68.60 2.03 48.11 16 27 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 28 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 29 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 30 C 0.13 5.77 7.41 86.48 0.64 6.42 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.26 8.09 -2.39 -0.02 1.24 16 33 H 0.05 1.32 6.65 -2.39 -0.02 1.31 16 34 H 0.13 1.75 8.06 -2.91 -0.02 1.73 16 35 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 37 H 0.14 1.46 6.03 -2.91 -0.02 1.44 16 38 H 0.14 1.34 6.18 -2.38 -0.01 1.33 16 39 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.41 9.23 8.72 -92.71 -0.81 8.42 16 41 H 0.06 2.50 7.24 -2.39 -0.02 2.48 16 42 H 0.05 2.39 8.02 -2.39 -0.02 2.37 16 43 H 0.05 1.47 7.62 -2.38 -0.02 1.45 16 44 H 0.07 1.66 7.52 -2.39 -0.02 1.64 16 45 H 0.40 7.19 9.12 -74.05 -0.68 6.51 16 46 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.06 3.02 6.60 -2.38 -0.02 3.01 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 50 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -75.12 405.91 0.59 -74.53 By element: Atomic # 1 Polarization: 29.55 SS G_CDS: -0.51 Total: 29.04 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 5.35 Total: 2.88 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -4.20 Total: -113.26 kcal Atomic # 8 Polarization: -39.22 SS G_CDS: -2.08 Total: -41.30 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.12 0.59 -74.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700496659.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.030 kcal (2) G-P(sol) polarization free energy of solvation -75.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds