Wall clock time and date at job start Wed Apr 1 2020 04:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.00126 * 2 1 4 4 C 1.38206 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99669 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99672 * 180.02562 * 6 5 4 8 8 H 1.09004 * 115.54789 * 154.31151 * 7 6 5 9 9 C 1.52992 * 117.50109 * 8.60246 * 7 6 5 10 10 C 1.52997 * 117.50116 * 299.97658 * 7 6 5 11 11 H 1.09001 * 117.50228 * 359.97438 * 10 7 6 12 12 C 1.50702 * 117.49914 * 214.97855 * 10 7 6 13 13 O 1.21283 * 119.99984 * 0.02562 * 12 10 7 14 14 N 1.34775 * 120.00016 * 180.02562 * 12 10 7 15 15 C 1.46504 * 120.00267 * 174.84250 * 14 12 10 16 16 C 1.52996 * 112.94279 * 292.71482 * 15 14 12 17 17 C 1.53001 * 109.46984 * 304.08156 * 16 15 14 18 18 O 1.42901 * 109.47345 * 175.20608 * 17 16 15 19 19 C 1.53943 * 113.74515 * 160.97957 * 15 14 12 20 20 N 1.47576 * 86.11642 * 222.04973 * 19 15 14 21 21 C 1.36943 * 134.49222 * 204.64605 * 20 19 15 22 22 H 1.07994 * 120.00100 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00014 * 359.97438 * 21 20 19 24 24 N 1.31625 * 119.99822 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00332 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47099 * 60.00325 * 25 23 21 27 27 H 1.48498 * 109.47400 * 180.02562 * 25 23 21 28 28 H 1.48510 * 109.47194 * 300.00374 * 25 23 21 29 29 C 1.47575 * 91.02075 * 24.63742 * 20 19 15 30 30 C 1.38210 * 119.99518 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47007 * 270.02036 * 1 2 3 32 32 H 1.08997 * 109.47394 * 30.01723 * 1 2 3 33 33 H 1.09003 * 109.47317 * 150.02213 * 1 2 3 34 34 H 1.07999 * 119.99694 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.00142 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00498 * 179.97438 * 5 4 3 37 37 H 1.09000 * 117.50407 * 359.97438 * 9 7 6 38 38 H 1.09008 * 117.50197 * 145.01871 * 9 7 6 39 39 H 0.97005 * 120.00150 * 354.84039 * 14 12 10 40 40 H 1.09000 * 109.47357 * 64.08065 * 16 15 14 41 41 H 1.08994 * 109.47437 * 184.08435 * 16 15 14 42 42 H 1.09001 * 109.47044 * 295.20998 * 17 16 15 43 43 H 1.09002 * 109.47186 * 55.20701 * 17 16 15 44 44 H 0.96699 * 114.00354 * 179.97438 * 18 17 16 45 45 H 1.09003 * 113.76816 * 336.34237 * 19 15 14 46 46 H 1.08991 * 113.77138 * 107.74586 * 19 15 14 47 47 H 0.96993 * 120.00191 * 180.02562 * 24 23 21 48 48 H 1.08992 * 113.77477 * 221.05976 * 29 20 19 49 49 H 1.09005 * 113.77037 * 89.65821 * 29 20 19 50 50 H 1.07995 * 120.00419 * 359.71706 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1972 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5805 -1.1970 0.0005 7 6 4.3341 -2.5021 0.0011 8 1 3.8014 -3.3523 0.4274 9 6 5.8492 -2.4429 0.2047 10 6 5.2750 -2.7751 -1.1740 11 1 5.3487 -2.0110 -1.9478 12 6 5.3950 -4.1989 -1.6531 13 8 4.7582 -5.0770 -1.1104 14 7 6.2099 -4.4965 -2.6845 15 6 6.4139 -5.8930 -3.0777 16 6 7.1666 -6.7058 -2.0225 17 6 8.5015 -6.0260 -1.7116 18 8 9.1542 -6.7218 -0.6477 19 6 6.9678 -6.0607 -4.5042 20 7 6.0050 -7.1709 -4.6397 21 6 5.9403 -8.2955 -5.4184 22 1 5.1031 -8.9709 -5.3230 23 6 6.9509 -8.5673 -6.3303 24 7 7.9717 -7.7444 -6.4462 25 14 6.8624 -10.1009 -7.3931 26 1 5.6322 -10.0573 -8.2236 27 1 8.0546 -10.1605 -8.2764 28 1 6.8304 -11.3045 -6.5237 29 6 5.1399 -6.5826 -3.5988 30 6 2.1979 -1.1970 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6582 2.1326 0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3517 -0.0001 0.0005 37 1 6.3012 -1.4601 0.3378 38 1 6.3139 -3.2542 0.7652 39 1 6.6614 -3.7860 -3.1665 40 1 6.5681 -6.7639 -1.1134 41 1 7.3505 -7.7112 -2.4013 42 1 9.1338 -6.0439 -2.5993 43 1 8.3225 -4.9928 -1.4140 44 1 10.0088 -6.3451 -0.3973 45 1 6.7581 -5.2150 -5.1592 46 1 8.0104 -6.3769 -4.5363 47 1 8.6777 -7.9341 -7.0836 48 1 4.7232 -7.3155 -2.9080 49 1 4.3933 -5.8901 -3.9877 50 1 1.6580 -2.1322 0.0056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717509186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:54 Heat of formation + Delta-G solvation = 13.947308 kcal Electronic energy + Delta-G solvation = -29854.781033 eV Core-core repulsion = 25849.276443 eV Total energy + Delta-G solvation = -4005.504590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.43863 -39.64438 -38.20964 -36.41771 -36.27268 -33.62488 -32.75215 -31.90016 -31.02513 -30.30372 -27.23604 -27.07690 -25.04945 -24.87403 -23.73944 -23.04307 -22.30111 -21.52604 -20.21338 -19.59140 -18.59822 -17.53716 -17.15299 -16.77742 -16.72468 -15.55887 -15.53291 -15.13972 -14.89173 -14.72157 -14.56956 -14.15605 -14.06791 -13.98879 -13.69144 -13.52602 -13.36336 -12.72096 -12.54440 -12.48611 -12.38017 -12.08096 -11.93992 -11.72516 -11.62443 -11.44984 -11.14251 -11.07383 -10.94895 -10.82228 -10.75206 -10.69020 -10.55930 -10.18830 -9.89871 -9.68988 -9.59097 -9.23455 -8.95914 -8.89240 -8.70559 -8.57553 -6.92799 -5.80620 -3.12416 1.07071 1.17008 2.70883 3.28127 3.40166 3.43890 3.44797 3.52573 3.92696 4.34098 4.45877 4.47974 4.55841 4.66372 4.67051 4.77968 4.88613 4.93638 5.07066 5.11138 5.21030 5.22524 5.26582 5.33157 5.43705 5.47277 5.52207 5.53228 5.57952 5.71965 5.76691 5.81279 5.84649 5.89834 5.94200 5.95859 6.24902 6.34447 6.36725 6.44287 6.47830 6.53346 6.66463 6.74291 6.78933 6.84664 7.11242 7.31463 7.47943 7.85143 7.88238 7.94692 8.56030 9.01635 9.67428 10.54099 11.36986 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002342 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.376342 B =11952.213304 C =13066.901298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.126 4.126 6 C -0.045 4.045 7 C -0.086 4.086 8 H 0.127 0.873 9 C -0.145 4.145 10 C -0.174 4.174 11 H 0.122 0.878 12 C 0.541 3.459 13 O -0.534 6.534 14 N -0.711 5.711 15 C 0.123 3.877 16 C -0.094 4.094 17 C 0.081 3.919 18 O -0.575 6.575 19 C 0.167 3.833 20 N -0.605 5.605 21 C -0.219 4.219 22 H 0.082 0.918 23 C -0.007 4.007 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.283 1.283 29 C 0.130 3.870 30 C -0.109 4.109 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.119 0.881 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.397 0.603 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.037 0.963 44 H 0.372 0.628 45 H 0.030 0.970 46 H 0.082 0.918 47 H 0.255 0.745 48 H 0.052 0.948 49 H 0.035 0.965 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.940 19.747 14.358 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.144 4.144 6 C -0.045 4.045 7 C -0.105 4.105 8 H 0.145 0.855 9 C -0.182 4.182 10 C -0.196 4.196 11 H 0.140 0.860 12 C 0.326 3.674 13 O -0.411 6.411 14 N -0.362 5.362 15 C 0.037 3.963 16 C -0.132 4.132 17 C 0.004 3.996 18 O -0.380 6.380 19 C 0.041 3.959 20 N -0.332 5.332 21 C -0.347 4.347 22 H 0.099 0.901 23 C -0.204 4.204 24 N -0.571 5.571 25 Si 0.744 3.256 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.210 1.210 29 C 0.003 3.997 30 C -0.127 4.127 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.231 0.769 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.217 0.783 45 H 0.048 0.952 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.053 0.947 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.814 18.469 14.438 24.153 hybrid contribution 0.693 0.131 -1.119 1.323 sum -5.121 18.600 13.319 23.443 Atomic orbital electron populations 1.20804 0.91175 1.02897 1.02333 1.19914 0.96114 0.93062 0.99377 1.21019 0.94317 0.97433 1.01738 1.21086 0.94279 0.97846 1.00020 1.21051 1.00012 0.91913 1.01455 1.19143 0.93314 0.93002 0.99042 1.21062 0.91836 0.96712 1.00850 0.85515 1.23106 0.95446 1.03466 0.96196 1.22401 1.07144 0.96602 0.93432 0.85999 1.19515 0.79183 0.88724 0.79949 1.90689 1.44502 1.48901 1.57023 1.46114 1.47443 1.09252 1.33358 1.22951 0.98827 0.79103 0.95438 1.21314 0.93519 1.00102 0.98288 1.22144 0.94351 0.94172 0.88934 1.86497 1.37433 1.58619 1.55418 1.22530 0.97122 0.89744 0.86519 1.45683 1.21798 1.21785 1.43915 1.18961 1.05556 0.96688 1.13463 0.90055 1.24771 0.97061 0.98927 0.99600 1.69774 1.11183 1.37297 1.38820 0.86168 0.76889 0.82479 0.80055 1.21179 1.21558 1.20983 1.22773 0.92411 0.94479 0.89989 1.20912 0.93398 0.97838 1.00601 0.91166 0.91584 0.91358 0.86275 0.86093 0.85893 0.87624 0.87710 0.76902 0.91076 0.89174 0.93248 0.94452 0.78264 0.95228 0.90036 0.93554 0.93023 0.94695 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.01 36.01 0.36 -0.43 16 2 C -0.08 -0.77 5.88 -104.63 -0.62 -1.39 16 3 C -0.13 -1.07 9.70 -39.59 -0.38 -1.45 16 4 C -0.11 -0.95 10.05 -39.59 -0.40 -1.34 16 5 C -0.13 -1.13 9.30 -39.58 -0.37 -1.50 16 6 C -0.04 -0.46 5.61 -104.62 -0.59 -1.05 16 7 C -0.09 -0.94 5.55 -91.78 -0.51 -1.45 16 8 H 0.13 1.58 7.67 -51.93 -0.40 1.18 16 9 C -0.14 -1.36 9.56 -26.74 -0.26 -1.62 16 10 C -0.17 -1.95 5.82 -91.77 -0.53 -2.49 16 11 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 12 C 0.54 8.17 7.28 -10.99 -0.08 8.09 16 13 O -0.53 -10.05 14.72 5.55 0.08 -9.97 16 14 N -0.71 -10.68 4.46 -49.08 -0.22 -10.90 16 15 C 0.12 2.33 0.67 -134.04 -0.09 2.24 16 16 C -0.09 -1.80 4.86 -26.73 -0.13 -1.93 16 17 C 0.08 1.30 6.86 37.16 0.25 1.56 16 18 O -0.58 -8.99 13.66 -35.23 -0.48 -9.47 16 19 C 0.17 3.75 6.72 -2.98 -0.02 3.73 16 20 N -0.61 -15.54 3.54 -177.74 -0.63 -16.17 16 21 C -0.22 -6.16 10.70 -15.06 -0.16 -6.32 16 22 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 23 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 24 N -0.92 -26.75 11.38 55.49 0.63 -26.12 16 25 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.13 2.88 7.38 -2.98 -0.02 2.86 16 30 C -0.11 -1.12 9.39 -39.58 -0.37 -1.49 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 36 H 0.12 0.89 6.02 -52.48 -0.32 0.57 16 37 H 0.11 0.76 6.18 -51.93 -0.32 0.44 16 38 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 39 H 0.40 4.87 8.72 -40.82 -0.36 4.51 16 40 H 0.07 1.43 7.27 -51.93 -0.38 1.06 16 41 H 0.09 2.01 8.02 -51.93 -0.42 1.59 16 42 H 0.05 0.80 7.62 -51.93 -0.40 0.41 16 43 H 0.04 0.52 7.53 -51.93 -0.39 0.13 16 44 H 0.37 3.78 9.12 45.56 0.42 4.20 16 45 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 1.99 6.60 -51.93 -0.34 1.65 16 47 H 0.25 7.17 8.31 -40.82 -0.34 6.84 16 48 H 0.05 1.18 8.10 -51.93 -0.42 0.76 16 49 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 50 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 409.54 15.07 6.17 6.17 Total: -1.00 -33.90 409.54 -10.56 -44.46 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -7.09 Total: 9.12 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -4.01 Total: -4.28 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.22 Total: -53.18 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.40 Total: -19.44 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.90 -10.56 -44.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717509186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.408 kcal (2) G-P(sol) polarization free energy of solvation -33.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds