Wall clock time and date at job start Wed Apr 1 2020 04:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38252 * 120.00126 * 2 1 4 4 C 1.38206 * 119.99976 * 179.97438 * 3 2 1 5 5 C 1.38255 * 120.00289 * 0.02562 * 4 3 2 6 6 C 1.38215 * 119.99669 * 359.97438 * 5 4 3 7 7 C 1.50700 * 119.99672 * 180.02562 * 6 5 4 8 8 H 1.09004 * 115.54789 * 154.31151 * 7 6 5 9 9 C 1.52992 * 117.50109 * 8.60246 * 7 6 5 10 10 C 1.52997 * 117.50116 * 299.97658 * 7 6 5 11 11 H 1.09001 * 117.50228 * 359.97438 * 10 7 6 12 12 C 1.50702 * 117.49914 * 214.97855 * 10 7 6 13 13 O 1.21283 * 119.99984 * 0.02562 * 12 10 7 14 14 N 1.34775 * 120.00016 * 180.02562 * 12 10 7 15 15 C 1.46504 * 120.00267 * 174.84250 * 14 12 10 16 16 C 1.52996 * 112.94279 * 292.71482 * 15 14 12 17 17 C 1.53001 * 109.46984 * 304.08156 * 16 15 14 18 18 O 1.42901 * 109.47345 * 175.20608 * 17 16 15 19 19 C 1.53943 * 113.74515 * 160.97957 * 15 14 12 20 20 N 1.47576 * 86.11642 * 222.04973 * 19 15 14 21 21 C 1.36943 * 134.49222 * 204.64605 * 20 19 15 22 22 H 1.07994 * 120.00100 * 179.97438 * 21 20 19 23 23 C 1.38813 * 120.00014 * 359.97438 * 21 20 19 24 24 N 1.31625 * 119.99822 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00332 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47099 * 60.00325 * 25 23 21 27 27 H 1.48498 * 109.47400 * 180.02562 * 25 23 21 28 28 H 1.48510 * 109.47194 * 300.00374 * 25 23 21 29 29 C 1.47575 * 91.02075 * 24.63742 * 20 19 15 30 30 C 1.38210 * 119.99518 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47007 * 270.02036 * 1 2 3 32 32 H 1.08997 * 109.47394 * 30.01723 * 1 2 3 33 33 H 1.09003 * 109.47317 * 150.02213 * 1 2 3 34 34 H 1.07999 * 119.99694 * 0.02562 * 3 2 1 35 35 H 1.08006 * 120.00142 * 180.02562 * 4 3 2 36 36 H 1.08003 * 120.00498 * 179.97438 * 5 4 3 37 37 H 1.09000 * 117.50407 * 359.97438 * 9 7 6 38 38 H 1.09008 * 117.50197 * 145.01871 * 9 7 6 39 39 H 0.97005 * 120.00150 * 354.84039 * 14 12 10 40 40 H 1.09000 * 109.47357 * 64.08065 * 16 15 14 41 41 H 1.08994 * 109.47437 * 184.08435 * 16 15 14 42 42 H 1.09001 * 109.47044 * 295.20998 * 17 16 15 43 43 H 1.09002 * 109.47186 * 55.20701 * 17 16 15 44 44 H 0.96699 * 114.00354 * 179.97438 * 18 17 16 45 45 H 1.09003 * 113.76816 * 336.34237 * 19 15 14 46 46 H 1.08991 * 113.77138 * 107.74586 * 19 15 14 47 47 H 0.96993 * 120.00191 * 180.02562 * 24 23 21 48 48 H 1.08992 * 113.77477 * 221.05976 * 29 20 19 49 49 H 1.09005 * 113.77037 * 89.65821 * 29 20 19 50 50 H 1.07995 * 120.00419 * 359.71706 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5803 1.1972 0.0005 5 6 4.2716 -0.0001 0.0005 6 6 3.5805 -1.1970 0.0005 7 6 4.3341 -2.5021 0.0011 8 1 3.8014 -3.3523 0.4274 9 6 5.8492 -2.4429 0.2047 10 6 5.2750 -2.7751 -1.1740 11 1 5.3487 -2.0110 -1.9478 12 6 5.3950 -4.1989 -1.6531 13 8 4.7582 -5.0770 -1.1104 14 7 6.2099 -4.4965 -2.6845 15 6 6.4139 -5.8930 -3.0777 16 6 7.1666 -6.7058 -2.0225 17 6 8.5015 -6.0260 -1.7116 18 8 9.1542 -6.7218 -0.6477 19 6 6.9678 -6.0607 -4.5042 20 7 6.0050 -7.1709 -4.6397 21 6 5.9403 -8.2955 -5.4184 22 1 5.1031 -8.9709 -5.3230 23 6 6.9509 -8.5673 -6.3303 24 7 7.9717 -7.7444 -6.4462 25 14 6.8624 -10.1009 -7.3931 26 1 5.6322 -10.0573 -8.2236 27 1 8.0546 -10.1605 -8.2764 28 1 6.8304 -11.3045 -6.5237 29 6 5.1399 -6.5826 -3.5988 30 6 2.1979 -1.1970 0.0005 31 1 -0.3633 0.0004 1.0277 32 1 -0.3634 0.8898 -0.5141 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6582 2.1326 0.0004 35 1 4.1204 2.1326 0.0010 36 1 5.3517 -0.0001 0.0005 37 1 6.3012 -1.4601 0.3378 38 1 6.3139 -3.2542 0.7652 39 1 6.6614 -3.7860 -3.1665 40 1 6.5681 -6.7639 -1.1134 41 1 7.3505 -7.7112 -2.4013 42 1 9.1338 -6.0439 -2.5993 43 1 8.3225 -4.9928 -1.4140 44 1 10.0088 -6.3451 -0.3973 45 1 6.7581 -5.2150 -5.1592 46 1 8.0104 -6.3769 -4.5363 47 1 8.6777 -7.9341 -7.0836 48 1 4.7232 -7.3155 -2.9080 49 1 4.3933 -5.8901 -3.9877 50 1 1.6580 -2.1322 0.0056 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717509186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:53 Heat of formation + Delta-G solvation = -8.293950 kcal Electronic energy + Delta-G solvation = -29855.745486 eV Core-core repulsion = 25849.276443 eV Total energy + Delta-G solvation = -4006.469043 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.66095 -40.64710 -39.50604 -37.70651 -37.30732 -35.27086 -33.79312 -33.34618 -31.98586 -31.60824 -29.07225 -27.74854 -26.87813 -26.13412 -24.68653 -24.32104 -23.25721 -22.92759 -21.34201 -20.48340 -20.12774 -18.80182 -18.57787 -18.34314 -17.58282 -17.11074 -16.69765 -16.42200 -16.10806 -15.96275 -15.79411 -15.49855 -15.36479 -15.07602 -14.70242 -14.59842 -14.40812 -14.00812 -13.83443 -13.50011 -13.33967 -13.26349 -13.15972 -12.99917 -12.94401 -12.79298 -12.75268 -12.59273 -12.27748 -12.17307 -12.10536 -11.81839 -11.74018 -11.54305 -11.41611 -11.36951 -10.99100 -10.88640 -10.66429 -10.06690 -9.62786 -9.38193 -8.98613 -7.94926 -5.28391 0.39786 0.51344 1.44674 1.47863 1.53737 1.56368 2.07965 2.47555 2.70383 3.10829 3.13224 3.24569 3.35077 3.57324 3.59580 3.73401 3.89897 3.98892 4.09594 4.11741 4.14171 4.25478 4.27692 4.28488 4.33403 4.48318 4.52751 4.56949 4.69384 4.69861 4.77362 4.82502 4.83000 4.87558 4.98179 5.01566 5.04372 5.11256 5.11800 5.15810 5.20263 5.20562 5.33523 5.45115 5.61823 5.70125 5.71919 5.75617 5.87775 6.16076 6.64822 6.88677 6.92132 7.33841 7.54434 8.47860 9.21699 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002342 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.376342 B =11952.213304 C =13066.901298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.133 4.133 4 C -0.116 4.116 5 C -0.130 4.130 6 C -0.057 4.057 7 C -0.092 4.092 8 H 0.101 0.899 9 C -0.121 4.121 10 C -0.175 4.175 11 H 0.146 0.854 12 C 0.540 3.460 13 O -0.575 6.575 14 N -0.701 5.701 15 C 0.156 3.844 16 C -0.088 4.088 17 C 0.092 3.908 18 O -0.592 6.592 19 C 0.173 3.827 20 N -0.632 5.632 21 C -0.240 4.240 22 H 0.078 0.922 23 C -0.057 4.057 24 N -0.946 5.946 25 Si 0.979 3.021 26 H -0.279 1.279 27 H -0.288 1.288 28 H -0.279 1.279 29 C 0.127 3.873 30 C -0.134 4.134 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.098 0.902 39 H 0.415 0.585 40 H 0.059 0.941 41 H 0.051 0.949 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.397 0.603 45 H 0.033 0.967 46 H 0.061 0.939 47 H 0.252 0.748 48 H 0.037 0.963 49 H 0.037 0.963 50 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 22.514 14.955 27.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.096 4.096 3 C -0.151 4.151 4 C -0.134 4.134 5 C -0.147 4.147 6 C -0.057 4.057 7 C -0.111 4.111 8 H 0.120 0.880 9 C -0.158 4.158 10 C -0.196 4.196 11 H 0.164 0.836 12 C 0.328 3.672 13 O -0.455 6.455 14 N -0.353 5.353 15 C 0.068 3.932 16 C -0.127 4.127 17 C 0.015 3.985 18 O -0.401 6.401 19 C 0.048 3.952 20 N -0.359 5.359 21 C -0.368 4.368 22 H 0.095 0.905 23 C -0.251 4.251 24 N -0.594 5.594 25 Si 0.806 3.194 26 H -0.205 1.205 27 H -0.214 1.214 28 H -0.205 1.205 29 C 0.001 3.999 30 C -0.152 4.152 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.162 0.838 37 H 0.156 0.844 38 H 0.116 0.884 39 H 0.253 0.747 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.084 0.916 44 H 0.247 0.753 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.056 0.944 49 H 0.054 0.946 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.028 21.285 15.054 26.551 hybrid contribution 0.381 -0.712 -1.227 1.469 sum -4.647 20.574 13.827 25.221 Atomic orbital electron populations 1.20836 0.90048 1.03320 1.02960 1.20182 0.97191 0.93018 0.99169 1.21350 0.94855 0.97885 1.01003 1.21446 0.94391 0.98697 0.98876 1.21289 1.01101 0.91415 1.00920 1.19157 0.93263 0.93166 1.00164 1.20959 0.92874 0.96525 1.00734 0.88045 1.23238 0.94057 1.04788 0.93754 1.22324 1.08517 0.93985 0.94739 0.83602 1.20191 0.77883 0.90183 0.78983 1.90685 1.45951 1.50653 1.58184 1.45871 1.47860 1.07786 1.33782 1.22188 0.96004 0.81159 0.93811 1.21167 0.95578 0.98597 0.97312 1.21951 0.92381 0.94900 0.89280 1.86435 1.39272 1.59371 1.55010 1.22413 0.95502 0.88774 0.88544 1.45973 1.23452 1.22195 1.44266 1.19267 1.05684 0.97846 1.14033 0.90454 1.25559 0.96800 1.01899 1.00848 1.69925 1.11554 1.38706 1.39249 0.85161 0.76888 0.79035 0.78277 1.20473 1.21405 1.20527 1.22834 0.93527 0.94382 0.89204 1.21031 0.93951 0.98150 1.02033 0.90402 0.90286 0.91807 0.84259 0.83570 0.83807 0.84352 0.88353 0.74750 0.92191 0.93017 0.93508 0.91619 0.75300 0.94906 0.92095 0.93877 0.94441 0.94551 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.48 10.01 71.24 0.71 -0.77 16 2 C -0.10 -1.64 5.88 -19.87 -0.12 -1.76 16 3 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16 4 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 5 C -0.13 -1.93 9.30 22.27 0.21 -1.72 16 6 C -0.06 -1.11 5.61 -19.86 -0.11 -1.22 16 7 C -0.09 -1.93 5.55 -11.54 -0.06 -1.99 16 8 H 0.10 2.64 7.67 -2.39 -0.02 2.62 16 9 C -0.12 -1.94 9.56 30.59 0.29 -1.65 16 10 C -0.17 -3.54 5.82 -11.54 -0.07 -3.61 16 11 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 12 C 0.54 15.88 7.28 87.66 0.64 16.52 16 13 O -0.58 -22.02 14.72 -3.04 -0.04 -22.07 16 14 N -0.70 -20.31 4.46 -427.57 -1.91 -22.21 16 15 C 0.16 6.00 0.67 5.36 0.00 6.00 16 16 C -0.09 -3.44 4.86 30.59 0.15 -3.29 16 17 C 0.09 2.86 6.86 71.98 0.49 3.35 16 18 O -0.59 -17.71 13.66 -148.98 -2.04 -19.74 16 19 C 0.17 7.93 6.72 86.48 0.58 8.51 16 20 N -0.63 -33.49 3.54 -716.25 -2.54 -36.02 16 21 C -0.24 -13.88 10.70 84.03 0.90 -12.98 16 22 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 23 C -0.06 -3.27 5.50 84.86 0.47 -2.81 16 24 N -0.95 -55.64 11.38 21.65 0.25 -55.40 16 25 Si 0.98 46.10 29.55 68.60 2.03 48.13 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 28 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 29 C 0.13 5.81 7.38 86.48 0.64 6.45 16 30 C -0.13 -2.73 9.39 22.27 0.21 -2.52 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 32 H 0.08 0.79 8.09 -2.39 -0.02 0.77 16 33 H 0.06 0.86 8.09 -2.39 -0.02 0.84 16 34 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 35 H 0.15 1.17 8.06 -2.91 -0.02 1.14 16 36 H 0.14 1.44 6.02 -2.91 -0.02 1.42 16 37 H 0.14 1.33 6.18 -2.39 -0.01 1.32 16 38 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.42 9.25 8.72 -92.70 -0.81 8.44 16 40 H 0.06 2.48 7.27 -2.39 -0.02 2.46 16 41 H 0.05 2.41 8.02 -2.39 -0.02 2.39 16 42 H 0.05 1.48 7.62 -2.39 -0.02 1.47 16 43 H 0.07 1.67 7.53 -2.39 -0.02 1.65 16 44 H 0.40 7.18 9.12 -74.06 -0.68 6.50 16 45 H 0.03 1.48 8.14 -2.39 -0.02 1.47 16 46 H 0.06 3.05 6.60 -2.39 -0.02 3.04 16 47 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 48 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 49 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 50 H 0.11 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.85 409.54 0.60 -75.25 By element: Atomic # 1 Polarization: 29.11 SS G_CDS: -0.52 Total: 28.59 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.37 Total: 3.48 kcal Atomic # 7 Polarization: -109.44 SS G_CDS: -4.20 Total: -113.64 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -2.08 Total: -41.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -75.85 0.60 -75.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717509186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.957 kcal (2) G-P(sol) polarization free energy of solvation -75.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds