Wall clock time and date at job start Wed Apr 1 2020 03:38:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00183 * 2 1 4 4 C 1.38749 * 120.05789 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94724 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05576 * 0.28423 * 5 4 3 7 7 C 1.50698 * 119.94555 * 179.70149 * 6 5 4 8 8 C 1.50706 * 109.47084 * 264.99499 * 7 6 5 9 9 O 1.21280 * 119.99652 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99670 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46928 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.52145 * 330.41671 * 12 11 10 14 14 C 1.53009 * 117.44108 * 185.00218 * 12 11 10 15 15 H 1.08994 * 119.53828 * 4.11500 * 14 12 11 16 16 C 1.54385 * 118.12110 * 160.81340 * 14 12 11 17 17 N 1.48137 * 104.62276 * 87.18766 * 16 14 12 18 18 C 1.36936 * 127.84103 * 140.39114 * 17 16 14 19 19 H 1.08000 * 120.00255 * 195.60004 * 18 17 16 20 20 C 1.38814 * 119.99869 * 15.59686 * 18 17 16 21 21 N 1.31618 * 120.00106 * 9.09894 * 20 18 17 22 22 Si 1.86801 * 120.00093 * 189.09630 * 20 18 17 23 23 H 1.48500 * 109.47239 * 60.00178 * 22 20 18 24 24 H 1.48500 * 109.47006 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47112 * 300.00053 * 22 20 18 26 26 C 1.48148 * 104.32603 * 320.41418 * 17 16 14 27 27 C 1.53007 * 117.44384 * 115.76475 * 12 11 10 28 28 H 1.08997 * 119.53587 * 355.87704 * 27 12 11 29 29 C 1.38246 * 120.10898 * 359.44232 * 6 5 4 30 30 C 1.50697 * 119.97438 * 180.26183 * 29 6 5 31 31 C 1.38167 * 120.05552 * 0.55140 * 29 6 5 32 32 H 1.09003 * 109.47216 * 60.00210 * 1 2 3 33 33 H 1.08998 * 109.47358 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46837 * 300.00547 * 1 2 3 35 35 H 1.07998 * 120.02671 * 0.04998 * 4 3 2 36 36 H 1.07998 * 119.97047 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47417 * 24.99499 * 7 6 5 38 38 H 1.09005 * 109.47108 * 144.99537 * 7 6 5 39 39 H 0.96995 * 120.00315 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.46857 * 300.00302 * 11 10 8 41 41 H 1.09000 * 109.47118 * 59.99758 * 11 10 8 42 42 H 1.08999 * 110.40663 * 205.97464 * 16 14 12 43 43 H 1.09005 * 110.40747 * 328.39966 * 16 14 12 44 44 H 0.96994 * 120.00503 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.40681 * 280.80510 * 26 17 16 46 46 H 1.08996 * 110.50819 * 158.41688 * 26 17 16 47 47 H 1.09001 * 109.46761 * 270.29716 * 30 29 6 48 48 H 1.09004 * 109.47288 * 30.28857 * 30 29 6 49 49 H 1.08996 * 109.47464 * 150.29764 * 30 29 6 50 50 H 1.07996 * 120.02944 * 179.70236 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0070 7 6 3.9862 5.0184 -0.0144 8 6 4.3189 5.4049 -1.4325 9 8 4.0293 4.6628 -2.3471 10 7 4.9381 6.5752 -1.6844 11 6 5.2620 6.9506 -3.0630 12 6 5.9565 8.3138 -3.0705 13 1 5.6752 8.9887 -2.2620 14 6 6.2716 8.9372 -4.4318 15 1 5.9389 8.4375 -5.3416 16 6 6.5429 10.4558 -4.4915 17 7 7.9940 10.5872 -4.2239 18 6 8.8843 11.4398 -4.8201 19 1 9.9460 11.2683 -4.7204 20 6 8.4224 12.5246 -5.5528 21 7 7.1445 12.8390 -5.5284 22 14 9.6143 13.5381 -6.5734 23 1 10.2602 12.6682 -7.5889 24 1 8.8764 14.6318 -7.2550 25 1 10.6538 14.1204 -5.6871 26 6 8.2636 9.5866 -3.1652 27 6 7.4062 8.3640 -3.5574 28 1 7.9186 7.4374 -3.8157 29 6 4.0561 2.5170 -0.0008 30 6 5.5609 2.5980 -0.0013 31 6 3.4312 1.2847 -0.0001 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 0.2129 2.3204 -0.0001 36 1 1.3341 4.5113 -0.0019 37 1 3.3231 5.7665 0.4200 38 1 4.9036 4.9619 0.5716 39 1 5.1700 7.1685 -0.9530 40 1 5.9257 6.2026 -3.4968 41 1 4.3449 7.0063 -3.6494 42 1 6.3019 10.8464 -5.4801 43 1 5.9667 10.9753 -3.7258 44 1 6.8218 13.5972 -6.0400 45 1 7.9560 9.9702 -2.1924 46 1 9.3206 9.3207 -3.1513 47 1 5.9232 2.6172 -1.0291 48 1 5.8761 3.5064 0.5121 49 1 5.9717 1.7290 0.5125 50 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725307561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:30 Heat of formation + Delta-G solvation = 5.368068 kcal Electronic energy + Delta-G solvation = -28707.771057 eV Core-core repulsion = 24701.894443 eV Total energy + Delta-G solvation = -4005.876614 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.67834 -39.72384 -38.79900 -37.87650 -34.93717 -33.35869 -32.93952 -32.42857 -30.85615 -29.11173 -27.64992 -27.14032 -26.86770 -26.26572 -24.64862 -22.54045 -21.37056 -21.10169 -20.52313 -19.67528 -19.25550 -18.02513 -17.15974 -16.87448 -16.79573 -16.34952 -16.04002 -15.44836 -15.19719 -14.79293 -14.50189 -14.38254 -14.23028 -13.96894 -13.68953 -13.50399 -13.34591 -13.16097 -12.82669 -12.69184 -12.59441 -12.47951 -12.22572 -12.04800 -11.83706 -11.53275 -11.25728 -11.18490 -11.11275 -11.04103 -10.82758 -10.66405 -10.31909 -10.17161 -9.98701 -9.74909 -9.40603 -9.13599 -8.99841 -8.93271 -8.64693 -8.31158 -6.88282 -5.81143 -3.15531 1.10466 1.16715 2.60880 2.95516 3.09809 3.37853 3.42602 3.43737 3.57177 4.13538 4.41687 4.45386 4.47227 4.60952 4.71170 4.78469 4.82848 4.86669 4.92770 4.94236 5.05339 5.09645 5.21245 5.29083 5.36399 5.38422 5.43677 5.46280 5.49582 5.50769 5.70043 5.78859 5.84932 5.89334 5.91977 5.96708 6.05297 6.12736 6.21702 6.37427 6.39986 6.51900 6.55324 6.65165 6.69967 6.90543 7.11532 7.34146 7.48313 7.51542 7.70184 8.19697 8.20409 9.09643 9.72516 10.49537 11.33134 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.001561 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.397523 B =17929.217946 C =18255.766583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.128 3.872 4 C -0.213 4.213 5 C -0.063 4.063 6 C -0.102 4.102 7 C -0.101 4.101 8 C 0.511 3.489 9 O -0.534 6.534 10 N -0.726 5.726 11 C 0.155 3.845 12 C -0.149 4.149 13 H 0.102 0.898 14 C -0.162 4.162 15 H 0.103 0.897 16 C 0.184 3.816 17 N -0.594 5.594 18 C -0.229 4.229 19 H 0.076 0.924 20 C -0.005 4.005 21 N -0.916 5.916 22 Si 0.913 3.087 23 H -0.284 1.284 24 H -0.289 1.289 25 H -0.283 1.283 26 C 0.154 3.846 27 C -0.171 4.171 28 H 0.102 0.898 29 C -0.028 4.028 30 C -0.120 4.120 31 C -0.152 4.152 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.126 0.874 36 H 0.124 0.876 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.023 0.977 44 H 0.255 0.745 45 H 0.024 0.976 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 -22.127 15.446 29.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.083 3.917 4 C -0.231 4.231 5 C -0.081 4.081 6 C -0.102 4.102 7 C -0.141 4.141 8 C 0.297 3.703 9 O -0.410 6.410 10 N -0.378 5.378 11 C 0.032 3.968 12 C -0.168 4.168 13 H 0.120 0.880 14 C -0.183 4.183 15 H 0.121 0.879 16 C 0.058 3.942 17 N -0.318 5.318 18 C -0.357 4.357 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.562 5.562 22 Si 0.743 3.257 23 H -0.211 1.211 24 H -0.215 1.215 25 H -0.210 1.210 26 C 0.028 3.972 27 C -0.191 4.191 28 H 0.120 0.880 29 C -0.028 4.028 30 C -0.176 4.176 31 C -0.171 4.171 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.119 0.881 38 H 0.123 0.877 39 H 0.236 0.764 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.041 0.959 44 H 0.065 0.935 45 H 0.041 0.959 46 H 0.068 0.932 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.932 -22.594 14.601 29.429 hybrid contribution 0.293 0.970 -0.276 1.050 sum -11.640 -21.624 14.325 28.430 Atomic orbital electron populations 1.23046 0.78441 1.03845 1.01407 1.86054 1.21360 1.27103 1.88808 1.18976 0.92279 0.84052 0.96370 1.21127 0.99862 0.92267 1.09887 1.20745 0.93655 0.97120 0.96580 1.19003 0.93216 0.93295 1.04706 1.20654 1.02642 0.95788 0.95022 1.20530 0.77577 0.81081 0.91127 1.90728 1.52561 1.51104 1.46615 1.46068 1.60807 1.21099 1.09848 1.20849 0.99374 0.94360 0.82230 1.22530 0.97888 0.96488 0.99920 0.87956 1.24238 1.01937 0.99906 0.92195 0.87931 1.21058 0.84770 0.86468 1.01862 1.45194 1.05185 1.41118 1.40287 1.18955 0.88159 1.02546 1.26020 0.90635 1.24893 0.96479 0.97244 1.01594 1.69881 1.12787 1.29291 1.44249 0.86191 0.79841 0.79530 0.80146 1.21057 1.21524 1.20983 1.21132 0.96358 0.87880 0.91837 1.23995 0.89424 1.00180 1.05533 0.87970 1.19462 0.95944 0.91597 0.95843 1.20895 0.90848 1.02808 1.03066 1.20200 0.91275 0.97970 1.07661 0.92592 0.88315 0.92683 0.85585 0.85840 0.88107 0.87745 0.76437 0.91547 0.91265 0.89201 0.95891 0.93492 0.95879 0.93218 0.90417 0.91132 0.91281 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.14 10.50 -19.41 -0.20 -3.35 16 3 C 0.13 1.36 6.69 -39.22 -0.26 1.10 16 4 C -0.21 -2.05 9.04 -39.43 -0.36 -2.40 16 5 C -0.06 -0.62 9.67 -39.61 -0.38 -1.00 16 6 C -0.10 -1.03 4.37 -104.60 -0.46 -1.49 16 7 C -0.10 -0.84 5.33 -29.03 -0.15 -0.99 16 8 C 0.51 6.00 7.82 -10.98 -0.09 5.91 16 9 O -0.53 -8.58 16.03 5.56 0.09 -8.49 16 10 N -0.73 -7.84 5.56 -60.29 -0.33 -8.18 16 11 C 0.16 2.05 5.95 -4.04 -0.02 2.03 16 12 C -0.15 -2.22 5.39 -90.61 -0.49 -2.70 16 13 H 0.10 1.50 8.04 -51.93 -0.42 1.08 16 14 C -0.16 -3.02 6.85 -89.21 -0.61 -3.63 16 15 H 0.10 1.83 8.14 -51.93 -0.42 1.41 16 16 C 0.18 4.36 5.70 -2.42 -0.01 4.35 16 17 N -0.59 -15.10 3.38 -168.87 -0.57 -15.67 16 18 C -0.23 -6.34 10.35 -15.06 -0.16 -6.49 16 19 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 20 C 0.00 -0.14 5.40 -17.43 -0.09 -0.23 16 21 N -0.92 -26.64 10.87 55.49 0.60 -26.03 16 22 Si 0.91 21.80 29.56 -169.99 -5.03 16.77 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C 0.15 3.16 7.04 -2.41 -0.02 3.14 16 27 C -0.17 -2.96 6.74 -89.21 -0.60 -3.56 16 28 H 0.10 1.64 8.12 -51.93 -0.42 1.22 16 29 C -0.03 -0.29 5.88 -104.65 -0.62 -0.91 16 30 C -0.12 -1.00 9.59 36.00 0.35 -0.65 16 31 C -0.15 -1.61 9.64 -39.43 -0.38 -1.99 16 32 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 33 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 35 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.10 0.61 8.05 -51.93 -0.42 0.19 16 38 H 0.10 0.65 6.15 -51.93 -0.32 0.33 16 39 H 0.40 3.31 8.40 -40.82 -0.34 2.97 16 40 H 0.07 0.94 7.94 -51.93 -0.41 0.52 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.49 6.03 -51.93 -0.31 0.18 16 49 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 50 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 406.70 15.07 6.13 6.13 Total: -1.00 -34.01 406.70 -10.56 -44.57 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -7.88 Total: 2.62 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -3.36 Total: -8.38 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.30 Total: -49.88 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.11 Total: -11.83 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.01 -10.56 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725307561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.936 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds