Wall clock time and date at job start Wed Apr 1 2020 03:38:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35895 * 117.00183 * 2 1 4 4 C 1.38749 * 120.05789 * 359.97438 * 3 2 1 5 5 C 1.38123 * 119.94724 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05576 * 0.28423 * 5 4 3 7 7 C 1.50698 * 119.94555 * 179.70149 * 6 5 4 8 8 C 1.50706 * 109.47084 * 264.99499 * 7 6 5 9 9 O 1.21280 * 119.99652 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99812 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99670 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46928 * 180.02562 * 11 10 8 13 13 H 1.09001 * 115.52145 * 330.41671 * 12 11 10 14 14 C 1.53009 * 117.44108 * 185.00218 * 12 11 10 15 15 H 1.08994 * 119.53828 * 4.11500 * 14 12 11 16 16 C 1.54385 * 118.12110 * 160.81340 * 14 12 11 17 17 N 1.48137 * 104.62276 * 87.18766 * 16 14 12 18 18 C 1.36936 * 127.84103 * 140.39114 * 17 16 14 19 19 H 1.08000 * 120.00255 * 195.60004 * 18 17 16 20 20 C 1.38814 * 119.99869 * 15.59686 * 18 17 16 21 21 N 1.31618 * 120.00106 * 9.09894 * 20 18 17 22 22 Si 1.86801 * 120.00093 * 189.09630 * 20 18 17 23 23 H 1.48500 * 109.47239 * 60.00178 * 22 20 18 24 24 H 1.48500 * 109.47006 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47112 * 300.00053 * 22 20 18 26 26 C 1.48148 * 104.32603 * 320.41418 * 17 16 14 27 27 C 1.53007 * 117.44384 * 115.76475 * 12 11 10 28 28 H 1.08997 * 119.53587 * 355.87704 * 27 12 11 29 29 C 1.38246 * 120.10898 * 359.44232 * 6 5 4 30 30 C 1.50697 * 119.97438 * 180.26183 * 29 6 5 31 31 C 1.38167 * 120.05552 * 0.55140 * 29 6 5 32 32 H 1.09003 * 109.47216 * 60.00210 * 1 2 3 33 33 H 1.08998 * 109.47358 * 180.02562 * 1 2 3 34 34 H 1.09005 * 109.46837 * 300.00547 * 1 2 3 35 35 H 1.07998 * 120.02671 * 0.04998 * 4 3 2 36 36 H 1.07998 * 119.97047 * 179.97438 * 5 4 3 37 37 H 1.08993 * 109.47417 * 24.99499 * 7 6 5 38 38 H 1.09005 * 109.47108 * 144.99537 * 7 6 5 39 39 H 0.96995 * 120.00315 * 0.02562 * 10 8 7 40 40 H 1.09001 * 109.46857 * 300.00302 * 11 10 8 41 41 H 1.09000 * 109.47118 * 59.99758 * 11 10 8 42 42 H 1.08999 * 110.40663 * 205.97464 * 16 14 12 43 43 H 1.09005 * 110.40747 * 328.39966 * 16 14 12 44 44 H 0.96994 * 120.00503 * 179.97438 * 21 20 18 45 45 H 1.09004 * 110.40681 * 280.80510 * 26 17 16 46 46 H 1.08996 * 110.50819 * 158.41688 * 26 17 16 47 47 H 1.09001 * 109.46761 * 270.29716 * 30 29 6 48 48 H 1.09004 * 109.47288 * 30.28857 * 30 29 6 49 49 H 1.08996 * 109.47464 * 150.29764 * 30 29 6 50 50 H 1.07996 * 120.02944 * 179.70236 * 31 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6757 -0.0070 7 6 3.9862 5.0184 -0.0144 8 6 4.3189 5.4049 -1.4325 9 8 4.0293 4.6628 -2.3471 10 7 4.9381 6.5752 -1.6844 11 6 5.2620 6.9506 -3.0630 12 6 5.9565 8.3138 -3.0705 13 1 5.6752 8.9887 -2.2620 14 6 6.2716 8.9372 -4.4318 15 1 5.9389 8.4375 -5.3416 16 6 6.5429 10.4558 -4.4915 17 7 7.9940 10.5872 -4.2239 18 6 8.8843 11.4398 -4.8201 19 1 9.9460 11.2683 -4.7204 20 6 8.4224 12.5246 -5.5528 21 7 7.1445 12.8390 -5.5284 22 14 9.6143 13.5381 -6.5734 23 1 10.2602 12.6682 -7.5889 24 1 8.8764 14.6318 -7.2550 25 1 10.6538 14.1204 -5.6871 26 6 8.2636 9.5866 -3.1652 27 6 7.4062 8.3640 -3.5574 28 1 7.9186 7.4374 -3.8157 29 6 4.0561 2.5170 -0.0008 30 6 5.5609 2.5980 -0.0013 31 6 3.4312 1.2847 -0.0001 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 0.2129 2.3204 -0.0001 36 1 1.3341 4.5113 -0.0019 37 1 3.3231 5.7665 0.4200 38 1 4.9036 4.9619 0.5716 39 1 5.1700 7.1685 -0.9530 40 1 5.9257 6.2026 -3.4968 41 1 4.3449 7.0063 -3.6494 42 1 6.3019 10.8464 -5.4801 43 1 5.9667 10.9753 -3.7258 44 1 6.8218 13.5972 -6.0400 45 1 7.9560 9.9702 -2.1924 46 1 9.3206 9.3207 -3.1513 47 1 5.9232 2.6172 -1.0291 48 1 5.8761 3.5064 0.5121 49 1 5.9717 1.7290 0.5125 50 1 4.0206 0.3798 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725307561.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:38:29 Heat of formation + Delta-G solvation = -15.183339 kcal Electronic energy + Delta-G solvation = -28708.662232 eV Core-core repulsion = 24701.894443 eV Total energy + Delta-G solvation = -4006.767789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.41733 -40.73495 -40.13235 -38.62363 -36.27684 -34.93584 -33.64569 -33.19553 -32.61222 -29.88472 -28.91308 -28.72556 -27.45211 -27.41249 -26.08915 -23.31512 -22.84203 -22.06268 -21.66745 -20.87991 -20.72043 -18.83432 -18.67847 -18.02635 -17.54854 -17.30663 -16.76198 -16.63901 -16.33991 -16.01936 -15.86203 -15.34639 -15.13937 -15.00461 -14.78731 -14.60641 -14.44169 -14.21914 -14.18197 -14.01914 -13.35304 -13.23761 -13.17035 -13.07228 -12.90636 -12.78460 -12.69023 -12.66532 -12.32729 -12.15296 -11.96785 -11.94308 -11.81710 -11.75338 -11.68341 -11.06465 -10.85362 -10.67208 -10.51771 -9.97955 -9.71136 -9.02178 -8.89808 -7.91314 -5.27400 0.39320 0.43836 1.46531 1.49726 1.56180 1.73385 2.18890 2.38258 2.48192 2.72814 2.85910 3.27199 3.64955 3.72455 3.74518 3.83500 3.86348 3.95817 4.07603 4.20708 4.25882 4.26878 4.30281 4.36351 4.37805 4.44180 4.45037 4.57862 4.64605 4.67586 4.69746 4.73783 4.78435 4.83550 4.85960 4.95726 5.04117 5.06104 5.19377 5.24933 5.36027 5.36885 5.42766 5.45390 5.53129 5.54478 5.67199 5.70318 5.86140 6.18837 6.46215 6.65618 7.01757 7.35025 7.69282 8.47473 9.22230 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.036055 B = 0.001561 C = 0.001533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.397523 B =17929.217946 C =18255.766583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.220 4.220 5 C -0.073 4.073 6 C -0.116 4.116 7 C -0.094 4.094 8 C 0.513 3.487 9 O -0.581 6.581 10 N -0.716 5.716 11 C 0.164 3.836 12 C -0.105 4.105 13 H 0.112 0.888 14 C -0.180 4.180 15 H 0.109 0.891 16 C 0.190 3.810 17 N -0.621 5.621 18 C -0.243 4.243 19 H 0.080 0.920 20 C -0.062 4.062 21 N -0.947 5.947 22 Si 0.979 3.021 23 H -0.278 1.278 24 H -0.294 1.294 25 H -0.274 1.274 26 C 0.149 3.851 27 C -0.160 4.160 28 H 0.122 0.878 29 C -0.041 4.041 30 C -0.118 4.118 31 C -0.173 4.173 32 H 0.059 0.941 33 H 0.118 0.882 34 H 0.066 0.934 35 H 0.145 0.855 36 H 0.141 0.859 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.417 0.583 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.004 0.996 44 H 0.250 0.750 45 H 0.030 0.970 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.765 -22.986 17.074 30.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.068 3.932 4 C -0.239 4.239 5 C -0.091 4.091 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.300 3.700 9 O -0.460 6.460 10 N -0.369 5.369 11 C 0.040 3.960 12 C -0.124 4.124 13 H 0.130 0.870 14 C -0.201 4.201 15 H 0.127 0.873 16 C 0.064 3.936 17 N -0.346 5.346 18 C -0.372 4.372 19 H 0.098 0.902 20 C -0.256 4.256 21 N -0.595 5.595 22 Si 0.807 3.193 23 H -0.204 1.204 24 H -0.220 1.220 25 H -0.199 1.199 26 C 0.024 3.976 27 C -0.179 4.179 28 H 0.140 0.860 29 C -0.041 4.041 30 C -0.174 4.174 31 C -0.192 4.192 32 H 0.077 0.923 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.254 0.746 40 H 0.081 0.919 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.048 0.952 46 H 0.074 0.926 47 H 0.081 0.919 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -11.830 -23.466 16.280 30.913 hybrid contribution 0.217 1.178 -0.736 1.406 sum -11.612 -22.287 15.543 29.549 Atomic orbital electron populations 1.23314 0.76587 1.05465 1.02129 1.86025 1.23391 1.27056 1.88804 1.19203 0.92614 0.84703 0.96634 1.21394 1.00913 0.92039 1.09525 1.21078 0.93993 0.97866 0.96189 1.19293 0.93608 0.94092 1.04702 1.20701 1.04297 0.95448 0.92831 1.21099 0.76429 0.80362 0.92065 1.90719 1.54465 1.52505 1.48338 1.45918 1.60397 1.21292 1.09256 1.20594 0.98746 0.92917 0.83711 1.22416 0.95765 0.96898 0.97321 0.86988 1.23922 1.04802 0.96559 0.94791 0.87258 1.20781 0.84196 0.89653 0.98937 1.45521 1.05497 1.41742 1.41804 1.19353 0.88965 1.02926 1.25929 0.90200 1.25725 0.98098 0.98689 1.03042 1.70079 1.14519 1.29682 1.45196 0.85152 0.77840 0.77759 0.78575 1.20444 1.21978 1.19939 1.21294 0.97548 0.87923 0.90839 1.23919 0.89679 0.99425 1.04918 0.86015 1.19752 0.96983 0.91664 0.95683 1.20914 0.89750 1.04300 1.02455 1.20438 0.91770 0.98525 1.08427 0.92251 0.86367 0.91503 0.83764 0.84085 0.85276 0.85225 0.74571 0.91881 0.91873 0.93090 0.97851 0.94136 0.95216 0.92579 0.91907 0.89449 0.90088 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.32 16 2 O -0.34 -6.54 10.50 -92.37 -0.97 -7.51 16 3 C 0.11 2.37 6.69 22.51 0.15 2.52 16 4 C -0.22 -4.00 9.04 22.36 0.20 -3.80 16 5 C -0.07 -1.31 9.67 22.25 0.22 -1.10 16 6 C -0.12 -2.15 4.37 -19.85 -0.09 -2.24 16 7 C -0.09 -1.25 5.33 29.10 0.16 -1.09 16 8 C 0.51 10.71 7.82 87.66 0.69 11.40 16 9 O -0.58 -17.89 16.03 -3.03 -0.05 -17.94 16 10 N -0.72 -13.14 5.56 -463.06 -2.57 -15.72 16 11 C 0.16 3.92 5.95 86.38 0.51 4.44 16 12 C -0.11 -2.86 5.39 -10.79 -0.06 -2.92 16 13 H 0.11 2.92 8.04 -2.39 -0.02 2.90 16 14 C -0.18 -6.58 6.85 -9.88 -0.07 -6.65 16 15 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 16 C 0.19 9.22 5.70 86.54 0.49 9.71 16 17 N -0.62 -31.82 3.38 -688.17 -2.33 -34.15 16 18 C -0.24 -13.60 10.35 84.03 0.87 -12.73 16 19 H 0.08 4.26 7.84 -2.91 -0.02 4.24 16 20 C -0.06 -3.50 5.40 84.86 0.46 -3.04 16 21 N -0.95 -56.77 10.87 21.65 0.24 -56.54 16 22 Si 0.98 45.33 29.56 68.60 2.03 47.36 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 26 C 0.15 5.91 7.04 86.53 0.61 6.52 16 27 C -0.16 -5.16 6.74 -9.88 -0.07 -5.23 16 28 H 0.12 3.53 8.12 -2.39 -0.02 3.51 16 29 C -0.04 -0.80 5.88 -19.88 -0.12 -0.91 16 30 C -0.12 -1.79 9.59 71.24 0.68 -1.11 16 31 C -0.17 -3.64 9.64 22.37 0.22 -3.43 16 32 H 0.06 0.58 7.66 -2.39 -0.02 0.56 16 33 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.07 0.53 7.66 -2.38 -0.02 0.52 16 35 H 0.14 1.91 6.30 -2.91 -0.02 1.89 16 36 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.13 1.01 8.05 -2.39 -0.02 0.99 16 38 H 0.13 1.07 6.15 -2.38 -0.01 1.06 16 39 H 0.42 5.16 8.40 -92.71 -0.78 4.38 16 40 H 0.06 1.61 7.94 -2.39 -0.02 1.59 16 41 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.05 2.84 6.51 -2.39 -0.02 2.83 16 43 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 44 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.09 0.97 6.03 -2.38 -0.01 0.96 16 49 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 50 H 0.13 2.50 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -76.29 406.70 2.49 -73.80 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.17 Total: 19.03 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: 5.97 Total: -8.33 kcal Atomic # 7 Polarization: -101.73 SS G_CDS: -4.66 Total: -106.40 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: -1.02 Total: -25.45 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -76.29 2.49 -73.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725307561.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.616 kcal (2) G-P(sol) polarization free energy of solvation -76.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds