Wall clock time and date at job start Wed Apr 1 2020 04:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 120.00101 * 2 1 4 4 C 1.38209 * 120.00016 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00051 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00007 * 359.75314 * 5 4 3 7 7 C 1.38211 * 119.99792 * 179.97438 * 2 1 3 8 8 C 1.50689 * 120.00215 * 0.02562 * 7 2 1 9 9 H 1.09009 * 115.55390 * 334.32183 * 8 7 2 10 10 C 1.53077 * 117.49507 * 188.59508 * 8 7 2 11 11 C 1.53002 * 59.98498 * 252.50943 * 10 8 7 12 12 H 1.09001 * 117.49461 * 107.50104 * 11 10 8 13 13 C 1.50700 * 117.49942 * 252.49668 * 11 10 8 14 14 O 1.21283 * 119.99803 * 68.74644 * 13 11 10 15 15 N 1.34777 * 119.99675 * 249.02519 * 13 11 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 11 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 O 1.42896 * 110.64224 * 66.68467 * 17 16 15 19 19 C 1.55158 * 110.72386 * 190.02535 * 17 16 15 20 20 C 1.54910 * 101.58670 * 153.86397 * 19 17 16 21 21 N 1.47423 * 104.82874 * 322.99367 * 20 19 17 22 22 C 1.36939 * 125.64468 * 204.16146 * 21 20 19 23 23 H 1.08007 * 119.99948 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00212 * 359.95854 * 22 21 20 25 25 N 1.31617 * 119.99807 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00170 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46875 * 89.99947 * 26 24 22 28 28 H 1.48504 * 109.47059 * 209.99948 * 26 24 22 29 29 H 1.48505 * 109.47039 * 329.99877 * 26 24 22 30 30 C 1.47015 * 108.70728 * 24.12572 * 21 20 19 31 31 H 1.09005 * 109.47217 * 270.02752 * 1 2 3 32 32 H 1.08999 * 109.47100 * 30.02607 * 1 2 3 33 33 H 1.08999 * 109.47084 * 150.02371 * 1 2 3 34 34 H 1.08007 * 119.99710 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.99881 * 180.02562 * 5 4 3 37 37 H 1.07997 * 119.99937 * 180.27515 * 6 5 4 38 38 H 1.09008 * 117.51268 * 145.03211 * 10 8 7 39 39 H 1.08992 * 117.49669 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99894 * 359.71837 * 15 13 11 41 41 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 42 42 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 43 43 H 0.96691 * 114.00177 * 300.70423 * 18 17 16 44 44 H 1.09000 * 111.00153 * 271.94008 * 19 17 16 45 45 H 1.09000 * 111.00477 * 35.78924 * 19 17 16 46 46 H 1.08992 * 110.36681 * 204.15087 * 20 19 17 47 47 H 1.09002 * 110.45663 * 81.87134 * 20 19 17 48 48 H 0.97004 * 119.99965 * 180.02562 * 25 24 22 49 49 H 1.09003 * 109.88355 * 239.52567 * 30 21 20 50 50 H 1.09002 * 109.88553 * 118.35818 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0073 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.4417 -2.4659 0.4263 10 6 2.2539 -3.7853 0.2041 11 6 1.6793 -3.4534 -1.1746 12 1 2.3785 -3.1351 -1.9478 13 6 0.5065 -4.2691 -1.6544 14 8 -0.5729 -4.1559 -1.1132 15 7 0.6587 -5.1286 -2.6814 16 6 -0.4799 -5.9260 -3.1439 17 6 -0.0412 -6.8120 -4.3115 18 8 0.8961 -7.7970 -3.8720 19 6 -1.2689 -7.4792 -4.9860 20 6 -0.7443 -7.7142 -6.4244 21 7 0.0899 -6.5349 -6.7191 22 6 0.3808 -6.0552 -7.9683 23 1 1.0040 -5.1801 -8.0791 24 6 -0.1249 -6.6939 -9.0922 25 7 -0.8845 -7.7603 -8.9572 26 14 0.2714 -6.0391 -10.7963 27 1 1.5138 -6.6806 -11.2964 28 1 -0.8510 -6.3478 -11.7185 29 1 0.4663 -4.5685 -10.7285 30 6 0.5570 -5.9587 -5.4498 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0024 37 1 4.1207 -2.1322 0.0126 38 1 1.7836 -4.5937 0.7640 39 1 3.3309 -3.6850 0.3383 40 1 1.5220 -5.2191 -3.1142 41 1 -0.8404 -6.5521 -2.3278 42 1 -1.2791 -5.2617 -3.4727 43 1 1.6988 -7.4283 -3.4789 44 1 -1.5158 -8.4236 -4.5010 45 1 -2.1269 -6.8069 -4.9880 46 1 -1.5759 -7.7756 -7.1263 47 1 -0.1445 -8.6233 -6.4674 48 1 -1.2376 -8.2068 -9.7426 49 1 0.2122 -4.9284 -5.3613 50 1 1.6456 -5.9925 -5.4057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754761353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:05 Heat of formation + Delta-G solvation = -11.117633 kcal Electronic energy + Delta-G solvation = -29628.431627 eV Core-core repulsion = 25621.840140 eV Total energy + Delta-G solvation = -4006.591487 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.61569 -39.62620 -38.56045 -36.55439 -35.13760 -34.19516 -33.11057 -32.10823 -30.92104 -29.65718 -28.34378 -27.16293 -26.01053 -24.61813 -24.20126 -23.00341 -21.70364 -20.85392 -20.35069 -19.95391 -19.81998 -17.92637 -17.05551 -16.94967 -16.21193 -15.96154 -15.48490 -15.27486 -15.11814 -14.76804 -14.63259 -14.24693 -14.08174 -13.98108 -13.75842 -13.37264 -13.24331 -12.97692 -12.78644 -12.52047 -12.43100 -12.31686 -12.18393 -12.11072 -11.60505 -11.46432 -11.21196 -11.06092 -10.95720 -10.89948 -10.79622 -10.72770 -10.38783 -10.17315 -10.13712 -9.80618 -9.73283 -9.43773 -9.11030 -9.04999 -8.74337 -8.67452 -6.88508 -5.68623 -3.11118 0.99674 1.10215 2.39752 3.00501 3.34744 3.37947 3.42626 3.44875 3.76802 4.23448 4.40409 4.43809 4.45901 4.52818 4.60539 4.63556 4.74558 4.78924 4.90560 4.94984 5.05773 5.16930 5.24569 5.33963 5.36960 5.39982 5.42582 5.46883 5.58921 5.60048 5.63292 5.76421 5.80171 5.86255 5.94668 5.96142 6.21067 6.22248 6.22974 6.31832 6.38142 6.39628 6.47656 6.57369 6.60709 6.72129 7.39832 7.53706 7.58458 7.81852 7.91746 8.13952 8.31956 9.17769 9.78220 10.42435 11.35107 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002240 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.483705 B =12497.736208 C =13642.650206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.055 4.055 8 C -0.083 4.083 9 H 0.129 0.871 10 C -0.144 4.144 11 C -0.177 4.177 12 H 0.126 0.874 13 C 0.543 3.457 14 O -0.541 6.541 15 N -0.722 5.722 16 C 0.104 3.896 17 C 0.105 3.895 18 O -0.543 6.543 19 C -0.128 4.128 20 C 0.156 3.844 21 N -0.599 5.599 22 C -0.226 4.226 23 H 0.077 0.923 24 C -0.010 4.010 25 N -0.920 5.920 26 Si 0.916 3.084 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.116 3.884 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.108 0.892 40 H 0.401 0.599 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.365 0.635 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.108 0.892 47 H 0.018 0.982 48 H 0.253 0.747 49 H 0.031 0.969 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.822 12.940 21.209 26.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.055 4.055 8 C -0.102 4.102 9 H 0.147 0.853 10 C -0.182 4.182 11 C -0.199 4.199 12 H 0.144 0.856 13 C 0.330 3.670 14 O -0.419 6.419 15 N -0.373 5.373 16 C -0.020 4.020 17 C 0.064 3.936 18 O -0.348 6.348 19 C -0.167 4.167 20 C 0.031 3.969 21 N -0.326 5.326 22 C -0.354 4.354 23 H 0.095 0.905 24 C -0.205 4.205 25 N -0.568 5.568 26 Si 0.746 3.254 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C -0.011 4.011 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.235 0.765 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.211 0.789 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.126 0.874 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.048 0.952 50 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 6.503 12.549 21.111 25.405 hybrid contribution 1.285 0.708 -1.007 1.780 sum 7.788 13.257 20.104 25.310 Atomic orbital electron populations 1.20887 0.90979 1.03452 1.02516 1.19768 0.96282 0.92331 0.98877 1.21044 0.94292 0.97429 1.01014 1.21145 0.94319 0.98103 1.00242 1.21099 0.99844 0.92432 1.00868 1.21057 0.93503 0.98372 1.00434 1.18983 0.93009 0.92700 1.00791 1.21090 1.00873 0.87874 1.00333 0.85337 1.23152 1.00401 0.98865 0.95739 1.22360 1.00313 1.03413 0.93770 0.85618 1.19562 0.88680 0.79297 0.79507 1.90695 1.27492 1.66803 1.56896 1.45936 1.14329 1.42181 1.34833 1.22108 0.88962 0.93792 0.97097 1.22556 0.91727 0.88292 0.91032 1.86623 1.31579 1.34770 1.81787 1.23052 0.94254 1.00001 0.99374 1.21945 0.96272 0.88512 0.90173 1.44409 1.57694 1.30608 0.99854 1.19053 1.25932 1.08913 0.81496 0.90542 1.24801 1.00096 0.97655 0.97995 1.69791 1.38035 1.21192 1.27829 0.86060 0.77396 0.78112 0.83831 1.21590 1.21572 1.20681 1.21916 0.96349 0.95389 0.87407 0.91038 0.91514 0.90595 0.86011 0.86141 0.86068 0.85815 0.87653 0.87364 0.76501 0.90699 0.90288 0.78930 0.91056 0.90582 0.87417 0.96351 0.93621 0.95170 0.95960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.04 9.33 36.01 0.34 -0.71 16 2 C -0.07 -0.69 5.88 -104.62 -0.62 -1.30 16 3 C -0.12 -1.01 9.70 -39.58 -0.38 -1.40 16 4 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 5 C -0.12 -0.97 10.05 -39.58 -0.40 -1.37 16 6 C -0.12 -0.96 9.30 -39.58 -0.37 -1.33 16 7 C -0.05 -0.52 5.61 -104.63 -0.59 -1.10 16 8 C -0.08 -0.79 4.67 -91.73 -0.43 -1.22 16 9 H 0.13 1.38 6.43 -51.92 -0.33 1.05 16 10 C -0.14 -1.14 9.57 -26.69 -0.26 -1.39 16 11 C -0.18 -1.71 5.82 -91.77 -0.53 -2.25 16 12 H 0.13 1.07 8.14 -51.93 -0.42 0.65 16 13 C 0.54 6.96 7.61 -10.98 -0.08 6.88 16 14 O -0.54 -8.81 16.26 5.55 0.09 -8.72 16 15 N -0.72 -8.78 5.13 -60.30 -0.31 -9.09 16 16 C 0.10 1.51 4.80 -4.04 -0.02 1.49 16 17 C 0.11 1.78 0.93 -88.78 -0.08 1.70 16 18 O -0.54 -8.89 13.10 -35.23 -0.46 -9.35 16 19 C -0.13 -2.44 6.26 -24.58 -0.15 -2.60 16 20 C 0.16 3.81 5.88 -2.53 -0.01 3.80 16 21 N -0.60 -15.24 3.39 -170.07 -0.58 -15.82 16 22 C -0.23 -6.26 10.27 -15.06 -0.15 -6.42 16 23 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 24 C -0.01 -0.27 5.49 -17.43 -0.10 -0.37 16 25 N -0.92 -26.79 10.09 55.49 0.56 -26.23 16 26 Si 0.92 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 30 C 0.12 2.31 5.76 -3.07 -0.02 2.29 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 33 H 0.08 0.75 6.65 -51.93 -0.35 0.41 16 34 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 35 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 36 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 37 H 0.12 0.81 6.02 -52.49 -0.32 0.49 16 38 H 0.11 0.85 8.14 -51.92 -0.42 0.43 16 39 H 0.11 0.64 6.17 -51.93 -0.32 0.32 16 40 H 0.40 4.08 7.47 -40.82 -0.30 3.77 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.08 1.24 8.03 -51.93 -0.42 0.82 16 43 H 0.36 4.39 8.44 45.56 0.38 4.77 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.08 1.38 7.96 -51.93 -0.41 0.97 16 46 H 0.11 2.94 5.87 -51.93 -0.30 2.63 16 47 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 49 H 0.03 0.60 7.82 -51.93 -0.41 0.20 16 50 H 0.02 0.43 8.07 -51.93 -0.42 0.01 16 LS Contribution 402.01 15.07 6.06 6.06 Total: -1.00 -33.55 402.01 -10.88 -44.44 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -6.97 Total: 8.39 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -4.25 Total: -6.63 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.33 Total: -51.14 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.37 Total: -18.07 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.55 -10.88 -44.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754761353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.322 kcal (2) G-P(sol) polarization free energy of solvation -33.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds