Wall clock time and date at job start Wed Apr 1 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38260 * 120.00101 * 2 1 4 4 C 1.38209 * 120.00016 * 179.97438 * 3 2 1 5 5 C 1.38258 * 120.00051 * 359.97438 * 4 3 2 6 6 C 1.38212 * 120.00007 * 359.75314 * 5 4 3 7 7 C 1.38211 * 119.99792 * 179.97438 * 2 1 3 8 8 C 1.50689 * 120.00215 * 0.02562 * 7 2 1 9 9 H 1.09009 * 115.55390 * 334.32183 * 8 7 2 10 10 C 1.53077 * 117.49507 * 188.59508 * 8 7 2 11 11 C 1.53002 * 59.98498 * 252.50943 * 10 8 7 12 12 H 1.09001 * 117.49461 * 107.50104 * 11 10 8 13 13 C 1.50700 * 117.49942 * 252.49668 * 11 10 8 14 14 O 1.21283 * 119.99803 * 68.74644 * 13 11 10 15 15 N 1.34777 * 119.99675 * 249.02519 * 13 11 10 16 16 C 1.46497 * 119.99525 * 179.72583 * 15 13 11 17 17 C 1.52999 * 109.46992 * 179.97438 * 16 15 13 18 18 O 1.42896 * 110.64224 * 66.68467 * 17 16 15 19 19 C 1.55158 * 110.72386 * 190.02535 * 17 16 15 20 20 C 1.54910 * 101.58670 * 153.86397 * 19 17 16 21 21 N 1.47423 * 104.82874 * 322.99367 * 20 19 17 22 22 C 1.36939 * 125.64468 * 204.16146 * 21 20 19 23 23 H 1.08007 * 119.99948 * 179.97438 * 22 21 20 24 24 C 1.38812 * 120.00212 * 359.95854 * 22 21 20 25 25 N 1.31617 * 119.99807 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00170 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46875 * 89.99947 * 26 24 22 28 28 H 1.48504 * 109.47059 * 209.99948 * 26 24 22 29 29 H 1.48505 * 109.47039 * 329.99877 * 26 24 22 30 30 C 1.47015 * 108.70728 * 24.12572 * 21 20 19 31 31 H 1.09005 * 109.47217 * 270.02752 * 1 2 3 32 32 H 1.08999 * 109.47100 * 30.02607 * 1 2 3 33 33 H 1.08999 * 109.47084 * 150.02371 * 1 2 3 34 34 H 1.08007 * 119.99710 * 359.97438 * 3 2 1 35 35 H 1.08004 * 119.99799 * 180.02562 * 4 3 2 36 36 H 1.08001 * 119.99881 * 180.02562 * 5 4 3 37 37 H 1.07997 * 119.99937 * 180.27515 * 6 5 4 38 38 H 1.09008 * 117.51268 * 145.03211 * 10 8 7 39 39 H 1.08992 * 117.49669 * 0.02562 * 10 8 7 40 40 H 0.97000 * 119.99894 * 359.71837 * 15 13 11 41 41 H 1.08995 * 109.47421 * 299.99467 * 16 15 13 42 42 H 1.09001 * 109.47621 * 60.00103 * 16 15 13 43 43 H 0.96691 * 114.00177 * 300.70423 * 18 17 16 44 44 H 1.09000 * 111.00153 * 271.94008 * 19 17 16 45 45 H 1.09000 * 111.00477 * 35.78924 * 19 17 16 46 46 H 1.08992 * 110.36681 * 204.15087 * 20 19 17 47 47 H 1.09002 * 110.45663 * 81.87134 * 20 19 17 48 48 H 0.97004 * 119.99965 * 180.02562 * 25 24 22 49 49 H 1.09003 * 109.88355 * 239.52567 * 30 21 20 50 50 H 1.09002 * 109.88553 * 118.35818 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0016 6 6 3.5807 -1.1969 0.0073 7 6 2.1980 -1.1970 0.0005 8 6 1.4446 -2.5020 0.0005 9 1 0.4417 -2.4659 0.4263 10 6 2.2539 -3.7853 0.2041 11 6 1.6793 -3.4534 -1.1746 12 1 2.3785 -3.1351 -1.9478 13 6 0.5065 -4.2691 -1.6544 14 8 -0.5729 -4.1559 -1.1132 15 7 0.6587 -5.1286 -2.6814 16 6 -0.4799 -5.9260 -3.1439 17 6 -0.0412 -6.8120 -4.3115 18 8 0.8961 -7.7970 -3.8720 19 6 -1.2689 -7.4792 -4.9860 20 6 -0.7443 -7.7142 -6.4244 21 7 0.0899 -6.5349 -6.7191 22 6 0.3808 -6.0552 -7.9683 23 1 1.0040 -5.1801 -8.0791 24 6 -0.1249 -6.6939 -9.0922 25 7 -0.8845 -7.7603 -8.9572 26 14 0.2714 -6.0391 -10.7963 27 1 1.5138 -6.6806 -11.2964 28 1 -0.8510 -6.3478 -11.7185 29 1 0.4663 -4.5685 -10.7285 30 6 0.5570 -5.9587 -5.4498 31 1 -0.3634 0.0005 1.0277 32 1 -0.3633 0.8897 -0.5142 33 1 -0.3633 -0.8902 -0.5135 34 1 1.6583 2.1327 -0.0004 35 1 4.1204 2.1327 0.0010 36 1 5.3517 0.0000 0.0024 37 1 4.1207 -2.1322 0.0126 38 1 1.7836 -4.5937 0.7640 39 1 3.3309 -3.6850 0.3383 40 1 1.5220 -5.2191 -3.1142 41 1 -0.8404 -6.5521 -2.3278 42 1 -1.2791 -5.2617 -3.4727 43 1 1.6988 -7.4283 -3.4789 44 1 -1.5158 -8.4236 -4.5010 45 1 -2.1269 -6.8069 -4.9880 46 1 -1.5759 -7.7756 -7.1263 47 1 -0.1445 -8.6233 -6.4674 48 1 -1.2376 -8.2068 -9.7426 49 1 0.2122 -4.9284 -5.3613 50 1 1.6456 -5.9925 -5.4057 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754761353.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:04 Heat of formation + Delta-G solvation = -32.931702 kcal Electronic energy + Delta-G solvation = -29629.377556 eV Core-core repulsion = 25621.840140 eV Total energy + Delta-G solvation = -4007.537416 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.49122 -40.59501 -39.81582 -37.37213 -36.76912 -35.35995 -33.99349 -33.71719 -31.64293 -31.31817 -29.84343 -27.85468 -27.59839 -26.01365 -24.89566 -24.24937 -22.33583 -22.31120 -21.36095 -21.35360 -20.86819 -19.02184 -18.76585 -17.95638 -17.24145 -16.98338 -16.76062 -16.44966 -16.21790 -15.88867 -15.67456 -15.55970 -15.27891 -15.04340 -14.73864 -14.64581 -14.47866 -13.96215 -13.91625 -13.71617 -13.53189 -13.30802 -13.17481 -13.04996 -12.93938 -12.82289 -12.78113 -12.38995 -12.10721 -12.07203 -12.02397 -11.88968 -11.79817 -11.65654 -11.55687 -11.41144 -11.02210 -10.86902 -10.75238 -10.20509 -9.65328 -9.37636 -8.92245 -7.78980 -5.24135 0.37844 0.50304 1.44963 1.46312 1.48198 1.56915 2.02468 2.47887 2.67075 3.07999 3.14994 3.30788 3.40583 3.54052 3.68077 3.70006 3.85173 3.90637 3.93332 3.97177 4.02399 4.14426 4.21212 4.27994 4.45462 4.46751 4.58609 4.65235 4.66596 4.75426 4.76371 4.78411 4.79327 4.93421 4.95301 4.97579 4.98491 5.06780 5.13799 5.19693 5.30113 5.31269 5.44781 5.59736 5.62061 5.65219 5.77024 5.78251 6.14455 6.27766 6.43323 6.78855 7.07942 7.15245 7.75062 8.38712 9.23103 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013066 B = 0.002240 C = 0.002052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2142.483705 B =12497.736208 C =13642.650206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.131 4.131 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.121 4.121 7 C -0.068 4.068 8 C -0.090 4.090 9 H 0.109 0.891 10 C -0.123 4.123 11 C -0.180 4.180 12 H 0.142 0.858 13 C 0.542 3.458 14 O -0.580 6.580 15 N -0.713 5.713 16 C 0.119 3.881 17 C 0.127 3.873 18 O -0.554 6.554 19 C -0.121 4.121 20 C 0.159 3.841 21 N -0.623 5.623 22 C -0.240 4.240 23 H 0.083 0.917 24 C -0.068 4.068 25 N -0.949 5.949 26 Si 0.982 3.018 27 H -0.287 1.287 28 H -0.294 1.294 29 H -0.268 1.268 30 C 0.113 3.887 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.413 0.587 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.386 0.614 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.075 0.925 47 H -0.015 1.015 48 H 0.247 0.753 49 H 0.035 0.965 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.055 14.298 22.432 28.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.138 4.138 7 C -0.068 4.068 8 C -0.108 4.108 9 H 0.127 0.873 10 C -0.160 4.160 11 C -0.201 4.201 12 H 0.160 0.840 13 C 0.330 3.670 14 O -0.460 6.460 15 N -0.365 5.365 16 C -0.006 4.006 17 C 0.085 3.915 18 O -0.361 6.361 19 C -0.160 4.160 20 C 0.034 3.966 21 N -0.349 5.349 22 C -0.369 4.369 23 H 0.101 0.899 24 C -0.261 4.261 25 N -0.599 5.599 26 Si 0.810 3.190 27 H -0.214 1.214 28 H -0.220 1.220 29 H -0.193 1.193 30 C -0.013 4.013 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.249 0.751 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.235 0.765 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.093 0.907 47 H 0.003 0.997 48 H 0.057 0.943 49 H 0.053 0.947 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 8.786 13.929 22.363 27.772 hybrid contribution 0.632 0.308 -1.336 1.510 sum 9.419 14.237 21.027 27.084 Atomic orbital electron populations 1.20838 0.91093 1.02826 1.02694 1.19971 0.96543 0.93053 0.99816 1.21274 0.94943 0.97624 1.01013 1.21467 0.94212 0.99218 0.99535 1.21436 1.01065 0.92206 1.00097 1.21306 0.93038 0.99534 0.99961 1.19071 0.93698 0.92404 1.01659 1.20995 1.00555 0.88865 1.00417 0.87293 1.23278 1.01637 0.97484 0.93622 1.22323 0.99501 1.03428 0.94820 0.84030 1.20087 0.89034 0.78981 0.78880 1.90683 1.29262 1.67966 1.58116 1.45809 1.14196 1.41720 1.34744 1.21774 0.89353 0.93390 0.96035 1.22176 0.90633 0.87831 0.90862 1.86589 1.32649 1.34956 1.81902 1.22906 0.95477 1.01386 0.96192 1.21657 0.94660 0.87398 0.92848 1.44698 1.58243 1.30931 1.01025 1.19456 1.25558 1.09007 0.82866 0.89923 1.25670 1.00466 0.98199 1.01725 1.70050 1.39164 1.22414 1.28255 0.85032 0.76755 0.78104 0.79141 1.21370 1.22005 1.19267 1.22120 0.97142 0.95788 0.86235 0.90526 0.90798 0.92440 0.84814 0.84193 0.83930 0.83913 0.87820 0.84708 0.75081 0.90234 0.91372 0.76489 0.89547 0.89643 0.90717 0.99657 0.94277 0.94673 0.94562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.05 9.33 71.24 0.66 -1.38 16 2 C -0.09 -1.71 5.88 -19.86 -0.12 -1.83 16 3 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 4 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 5 C -0.13 -1.69 10.05 22.27 0.22 -1.46 16 6 C -0.12 -1.70 9.30 22.27 0.21 -1.49 16 7 C -0.07 -1.20 5.61 -19.87 -0.11 -1.31 16 8 C -0.09 -1.62 4.67 -11.52 -0.05 -1.67 16 9 H 0.11 2.40 6.43 -2.38 -0.02 2.38 16 10 C -0.12 -1.63 9.57 30.62 0.29 -1.34 16 11 C -0.18 -3.12 5.82 -11.54 -0.07 -3.19 16 12 H 0.14 2.01 8.14 -2.39 -0.02 1.99 16 13 C 0.54 13.16 7.61 87.66 0.67 13.83 16 14 O -0.58 -18.70 16.26 -3.04 -0.05 -18.75 16 15 N -0.71 -15.89 5.13 -463.07 -2.38 -18.26 16 16 C 0.12 3.25 4.80 86.38 0.41 3.67 16 17 C 0.13 4.09 0.93 -9.60 -0.01 4.08 16 18 O -0.55 -16.94 13.10 -148.98 -1.95 -18.89 16 19 C -0.12 -4.57 6.26 31.99 0.20 -4.37 16 20 C 0.16 8.02 5.88 86.86 0.51 8.53 16 21 N -0.62 -31.86 3.39 -691.99 -2.35 -34.21 16 22 C -0.24 -13.38 10.27 84.03 0.86 -12.52 16 23 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 24 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 25 N -0.95 -56.98 10.09 21.65 0.22 -56.76 16 26 Si 0.98 45.54 29.55 68.60 2.03 47.57 16 27 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 28 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 29 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 30 C 0.11 4.35 5.76 86.73 0.50 4.85 16 31 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 32 H 0.07 1.11 8.09 -2.39 -0.02 1.09 16 33 H 0.06 1.19 6.65 -2.39 -0.02 1.18 16 34 H 0.13 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.14 1.25 8.06 -2.91 -0.02 1.23 16 36 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 37 H 0.14 1.34 6.02 -2.91 -0.02 1.32 16 38 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 39 H 0.14 1.07 6.17 -2.39 -0.01 1.05 16 40 H 0.41 7.24 7.47 -92.71 -0.69 6.55 16 41 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 43 H 0.39 8.13 8.44 -74.06 -0.62 7.51 16 44 H 0.09 3.00 8.14 -2.39 -0.02 2.98 16 45 H 0.09 3.06 7.96 -2.39 -0.02 3.04 16 46 H 0.07 4.26 5.87 -2.39 -0.01 4.24 16 47 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 48 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 49 H 0.04 1.34 7.82 -2.39 -0.02 1.32 16 50 H 0.04 1.32 8.07 -2.39 -0.02 1.30 16 Total: -1.00 -74.41 402.01 0.26 -74.15 By element: Atomic # 1 Polarization: 27.82 SS G_CDS: -0.35 Total: 27.47 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: 5.09 Total: -2.32 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.51 Total: -109.24 kcal Atomic # 8 Polarization: -35.63 SS G_CDS: -2.00 Total: -37.64 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -74.41 0.26 -74.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754761353.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.220 kcal (2) G-P(sol) polarization free energy of solvation -74.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds