Wall clock time and date at job start Wed Apr 1 2020 04:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.99644 * 2 1 4 4 C 1.38205 * 119.99894 * 180.23187 * 3 2 1 5 5 C 1.38259 * 120.00218 * 359.81187 * 4 3 2 6 6 C 1.38213 * 119.99902 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00283 * 179.81565 * 2 1 3 8 8 C 1.50700 * 120.00265 * 359.97438 * 7 2 1 9 9 H 1.09000 * 115.54509 * 334.05399 * 8 7 2 10 10 C 1.53002 * 117.51823 * 188.35836 * 8 7 2 11 11 C 1.52994 * 117.50031 * 119.72551 * 8 7 2 12 12 H 1.09003 * 117.49954 * 359.97438 * 11 8 7 13 13 C 1.50700 * 117.49880 * 215.00421 * 11 8 7 14 14 O 1.21280 * 120.00119 * 359.97438 * 13 11 8 15 15 N 1.34772 * 119.99883 * 180.02562 * 13 11 8 16 16 C 1.46507 * 119.99861 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.46905 * 180.02562 * 16 15 13 18 18 O 1.42897 * 110.91703 * 303.90328 * 17 16 15 19 19 C 1.55157 * 110.99957 * 180.02562 * 17 16 15 20 20 C 1.54330 * 102.94049 * 206.42194 * 19 17 16 21 21 N 1.47019 * 107.26866 * 22.19588 * 20 19 17 22 22 C 1.36939 * 125.64704 * 181.10762 * 21 20 19 23 23 H 1.08001 * 119.99867 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00049 * 359.93688 * 22 21 20 25 25 N 1.31618 * 119.99856 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99915 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46829 * 90.00707 * 26 24 22 28 28 H 1.48507 * 109.46949 * 210.00363 * 26 24 22 29 29 H 1.48498 * 109.47419 * 330.00358 * 26 24 22 30 30 C 1.47426 * 108.70376 * 1.05523 * 21 20 19 31 31 H 1.08999 * 109.46816 * 270.18350 * 1 2 3 32 32 H 1.08989 * 109.47426 * 30.18593 * 1 2 3 33 33 H 1.09003 * 109.46850 * 150.18628 * 1 2 3 34 34 H 1.08006 * 119.99807 * 0.02562 * 3 2 1 35 35 H 1.08009 * 119.99935 * 179.79371 * 4 3 2 36 36 H 1.07997 * 120.00168 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00364 * 179.97438 * 6 5 4 38 38 H 1.08995 * 117.49760 * 145.02765 * 10 8 7 39 39 H 1.09000 * 117.50040 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00370 * 359.97438 * 15 13 11 41 41 H 1.09003 * 109.46801 * 60.00182 * 16 15 13 42 42 H 1.08995 * 109.47045 * 300.00188 * 16 15 13 43 43 H 0.96695 * 114.00382 * 56.09921 * 18 17 16 44 44 H 1.08996 * 110.72695 * 324.78555 * 19 17 16 45 45 H 1.09002 * 110.72001 * 88.06367 * 19 17 16 46 46 H 1.09000 * 109.88165 * 141.60879 * 20 19 17 47 47 H 1.08996 * 109.88261 * 262.77631 * 20 19 17 48 48 H 0.96999 * 119.99911 * 179.97438 * 25 24 22 49 49 H 1.09004 * 110.36498 * 217.03293 * 30 21 20 50 50 H 1.09000 * 110.45813 * 94.76043 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0048 5 6 4.2717 0.0002 -0.0058 6 6 3.5807 -1.1968 -0.0024 7 6 2.1981 -1.1969 0.0039 8 6 1.4448 -2.5020 0.0086 9 1 0.4441 -2.4656 0.4392 10 6 2.2542 -3.7847 0.2100 11 6 1.6739 -3.4543 -1.1667 12 1 2.3693 -3.1367 -1.9437 13 6 0.4988 -4.2702 -1.6406 14 8 -0.5776 -4.1577 -1.0933 15 7 0.6443 -5.1254 -2.6719 16 6 -0.4980 -5.9190 -3.1322 17 6 -0.0662 -6.8016 -4.3050 18 8 0.4929 -6.0136 -5.3578 19 6 -1.2518 -7.6587 -4.8219 20 6 -0.5479 -8.8836 -5.4429 21 7 0.7837 -8.9804 -4.8273 22 6 1.7327 -9.9224 -5.1224 23 1 2.6847 -9.9080 -4.6125 24 6 1.4709 -10.8964 -6.0762 25 7 0.3107 -10.9141 -6.6973 26 14 2.7653 -12.1819 -6.4781 27 1 2.5878 -13.3579 -5.5889 28 1 2.6194 -12.6054 -7.8940 29 1 4.1176 -11.6043 -6.2711 30 6 0.9284 -7.8946 -3.8407 31 1 -0.3633 0.0033 1.0277 32 1 -0.3633 0.8882 -0.5167 33 1 -0.3633 -0.8917 -0.5110 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1329 -0.0082 36 1 5.3517 0.0003 -0.0100 37 1 4.1207 -2.1321 -0.0035 38 1 1.7859 -4.5921 0.7729 39 1 3.3318 -3.6848 0.3395 40 1 1.5053 -5.2156 -3.1094 41 1 -1.2976 -5.2518 -3.4542 42 1 -0.8556 -6.5479 -2.3170 43 1 1.2370 -5.4608 -5.0828 44 1 -1.8971 -7.9617 -3.9973 45 1 -1.8194 -7.1158 -5.5777 46 1 -1.1205 -9.7868 -5.2317 47 1 -0.4495 -8.7480 -6.5199 48 1 0.1279 -11.5945 -7.3641 49 1 1.9476 -7.5081 -3.8487 50 1 0.6653 -8.2481 -2.8437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754761354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:09 Heat of formation + Delta-G solvation = -10.799539 kcal Electronic energy + Delta-G solvation = -29535.317777 eV Core-core repulsion = 25528.740083 eV Total energy + Delta-G solvation = -4006.577694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.63617 -39.63613 -38.54116 -36.57520 -35.14412 -34.10397 -33.14040 -32.13787 -30.94333 -29.66847 -28.38588 -27.19697 -25.99170 -24.60948 -24.20938 -22.99198 -21.72731 -20.81841 -20.32799 -20.12358 -19.76271 -17.96470 -17.07730 -16.91356 -16.22565 -15.96421 -15.46682 -15.36567 -15.09861 -14.70420 -14.47015 -14.27307 -14.19228 -14.04540 -13.77040 -13.40197 -13.33757 -12.92630 -12.79772 -12.56051 -12.45559 -12.33732 -12.19817 -11.93459 -11.71333 -11.48395 -11.23247 -11.02274 -10.97327 -10.90120 -10.75092 -10.73418 -10.34311 -10.21791 -10.12833 -9.86860 -9.75596 -9.45063 -9.12855 -9.07798 -8.77092 -8.59792 -6.84036 -5.72116 -3.05754 0.96963 1.07370 2.37815 2.96965 3.32922 3.39176 3.43648 3.46114 3.75877 4.21272 4.39924 4.46107 4.47633 4.51092 4.59147 4.60927 4.72329 4.77967 4.88966 4.92058 5.02445 5.12954 5.23004 5.32716 5.37472 5.38130 5.39571 5.51223 5.56920 5.60227 5.64852 5.75027 5.78067 5.81507 5.91051 5.94287 6.16078 6.19582 6.20621 6.28596 6.36663 6.36895 6.42387 6.53880 6.59749 6.69362 7.36411 7.52567 7.63368 7.82676 7.95167 8.11939 8.24614 9.20121 9.80279 10.45531 11.39604 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002005 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.958676 B =13959.546554 C =14756.540595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.120 4.120 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.054 4.054 8 C -0.084 4.084 9 H 0.129 0.871 10 C -0.144 4.144 11 C -0.178 4.178 12 H 0.126 0.874 13 C 0.544 3.456 14 O -0.541 6.541 15 N -0.721 5.721 16 C 0.104 3.896 17 C 0.102 3.898 18 O -0.535 6.535 19 C -0.128 4.128 20 C 0.182 3.818 21 N -0.598 5.598 22 C -0.230 4.230 23 H 0.077 0.923 24 C -0.008 4.008 25 N -0.920 5.920 26 Si 0.913 3.087 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 C 0.118 3.882 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.106 0.894 39 H 0.109 0.891 40 H 0.399 0.601 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.361 0.639 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.253 0.747 49 H 0.038 0.962 50 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.185 23.139 14.354 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.142 4.142 6 C -0.133 4.133 7 C -0.054 4.054 8 C -0.102 4.102 9 H 0.147 0.853 10 C -0.181 4.181 11 C -0.199 4.199 12 H 0.143 0.857 13 C 0.330 3.670 14 O -0.419 6.419 15 N -0.373 5.373 16 C -0.020 4.020 17 C 0.060 3.940 18 O -0.339 6.339 19 C -0.167 4.167 20 C 0.057 3.943 21 N -0.324 5.324 22 C -0.358 4.358 23 H 0.095 0.905 24 C -0.204 4.204 25 N -0.567 5.567 26 Si 0.744 3.256 27 H -0.216 1.216 28 H -0.216 1.216 29 H -0.207 1.207 30 C -0.009 4.009 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.234 0.766 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.207 0.793 44 H 0.091 0.909 45 H 0.091 0.909 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.063 0.937 49 H 0.056 0.944 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 2.932 22.694 14.214 26.937 hybrid contribution 1.635 -0.475 -0.241 1.719 sum 4.567 22.219 13.972 26.642 Atomic orbital electron populations 1.20881 0.91001 1.03363 1.02553 1.19764 0.96258 0.92328 0.98963 1.21038 0.94289 0.97408 1.01084 1.21144 0.94314 0.98099 1.00267 1.21105 0.99868 0.92423 1.00825 1.21073 0.93524 0.98409 1.00342 1.18988 0.93002 0.92694 1.00750 1.21083 1.00929 0.87890 1.00339 0.85347 1.23151 1.00425 0.98810 0.95686 1.22348 1.00251 1.03407 0.93864 0.85653 1.19555 0.88661 0.79286 0.79473 1.90695 1.27777 1.66836 1.56543 1.45891 1.14272 1.42373 1.34726 1.22056 0.88618 0.94191 0.97159 1.22730 0.96121 0.89515 0.85658 1.86666 1.51212 1.59936 1.36116 1.22916 0.95439 0.97638 1.00726 1.21137 0.84616 0.91943 0.96599 1.44343 1.14197 1.30537 1.43364 1.19019 0.94555 1.04303 1.17927 0.90537 1.24813 0.97364 0.99295 0.98934 1.69960 1.21755 1.35983 1.29007 0.86105 0.80567 0.81532 0.77439 1.21606 1.21643 1.20734 1.22121 0.96161 0.89302 0.93306 0.91028 0.91561 0.90622 0.86038 0.86150 0.86054 0.85768 0.87560 0.87321 0.76606 0.90773 0.90341 0.79258 0.90892 0.90933 0.93775 0.93132 0.93700 0.94399 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 9.33 36.01 0.34 -0.63 16 2 C -0.07 -0.65 5.88 -104.62 -0.62 -1.26 16 3 C -0.12 -0.95 9.70 -39.58 -0.38 -1.33 16 4 C -0.12 -0.89 10.05 -39.59 -0.40 -1.28 16 5 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 6 C -0.12 -0.93 9.30 -39.58 -0.37 -1.29 16 7 C -0.05 -0.49 5.61 -104.62 -0.59 -1.08 16 8 C -0.08 -0.78 4.65 -91.77 -0.43 -1.21 16 9 H 0.13 1.34 6.44 -51.93 -0.33 1.01 16 10 C -0.14 -1.16 9.56 -26.73 -0.26 -1.42 16 11 C -0.18 -1.65 5.82 -91.77 -0.53 -2.19 16 12 H 0.13 0.98 8.14 -51.93 -0.42 0.55 16 13 C 0.54 6.75 7.61 -10.99 -0.08 6.67 16 14 O -0.54 -8.59 16.26 5.56 0.09 -8.50 16 15 N -0.72 -8.47 5.20 -60.29 -0.31 -8.78 16 16 C 0.10 1.46 4.88 -4.04 -0.02 1.44 16 17 C 0.10 1.71 0.97 -88.47 -0.09 1.63 16 18 O -0.54 -9.12 13.20 -35.23 -0.46 -9.59 16 19 C -0.13 -2.41 6.16 -24.89 -0.15 -2.56 16 20 C 0.18 4.45 5.37 -3.06 -0.02 4.43 16 21 N -0.60 -15.17 3.39 -170.07 -0.58 -15.75 16 22 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 23 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 24 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 25 N -0.92 -27.17 10.31 55.49 0.57 -26.60 16 26 Si 0.91 22.10 29.55 -169.99 -5.02 17.08 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 C 0.12 2.32 6.21 -2.53 -0.02 2.31 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.45 8.09 -51.94 -0.42 0.03 16 33 H 0.07 0.69 6.66 -51.93 -0.35 0.35 16 34 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 36 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.12 0.80 6.02 -52.49 -0.32 0.48 16 38 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 0.68 6.18 -51.93 -0.32 0.36 16 40 H 0.40 3.87 7.28 -40.82 -0.30 3.57 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 43 H 0.36 4.58 7.69 45.56 0.35 4.93 16 44 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.04 1.18 7.51 -51.93 -0.39 0.79 16 47 H 0.05 1.40 7.38 -51.93 -0.38 1.02 16 48 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 49 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.03 0.50 7.98 -51.93 -0.41 0.09 16 LS Contribution 402.65 15.07 6.07 6.07 Total: -1.00 -34.12 402.65 -10.96 -45.08 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.06 Total: 6.94 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -4.26 Total: -5.95 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.32 Total: -51.13 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.37 Total: -18.09 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.12 -10.96 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754761354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.285 kcal (2) G-P(sol) polarization free energy of solvation -34.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds