Wall clock time and date at job start Wed Apr 1 2020 04:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38263 * 119.99644 * 2 1 4 4 C 1.38205 * 119.99894 * 180.23187 * 3 2 1 5 5 C 1.38259 * 120.00218 * 359.81187 * 4 3 2 6 6 C 1.38213 * 119.99902 * 0.02562 * 5 4 3 7 7 C 1.38208 * 120.00283 * 179.81565 * 2 1 3 8 8 C 1.50700 * 120.00265 * 359.97438 * 7 2 1 9 9 H 1.09000 * 115.54509 * 334.05399 * 8 7 2 10 10 C 1.53002 * 117.51823 * 188.35836 * 8 7 2 11 11 C 1.52994 * 117.50031 * 119.72551 * 8 7 2 12 12 H 1.09003 * 117.49954 * 359.97438 * 11 8 7 13 13 C 1.50700 * 117.49880 * 215.00421 * 11 8 7 14 14 O 1.21280 * 120.00119 * 359.97438 * 13 11 8 15 15 N 1.34772 * 119.99883 * 180.02562 * 13 11 8 16 16 C 1.46507 * 119.99861 * 179.97438 * 15 13 11 17 17 C 1.53001 * 109.46905 * 180.02562 * 16 15 13 18 18 O 1.42897 * 110.91703 * 303.90328 * 17 16 15 19 19 C 1.55157 * 110.99957 * 180.02562 * 17 16 15 20 20 C 1.54330 * 102.94049 * 206.42194 * 19 17 16 21 21 N 1.47019 * 107.26866 * 22.19588 * 20 19 17 22 22 C 1.36939 * 125.64704 * 181.10762 * 21 20 19 23 23 H 1.08001 * 119.99867 * 179.97438 * 22 21 20 24 24 C 1.38814 * 120.00049 * 359.93688 * 22 21 20 25 25 N 1.31618 * 119.99856 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 119.99915 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.46829 * 90.00707 * 26 24 22 28 28 H 1.48507 * 109.46949 * 210.00363 * 26 24 22 29 29 H 1.48498 * 109.47419 * 330.00358 * 26 24 22 30 30 C 1.47426 * 108.70376 * 1.05523 * 21 20 19 31 31 H 1.08999 * 109.46816 * 270.18350 * 1 2 3 32 32 H 1.08989 * 109.47426 * 30.18593 * 1 2 3 33 33 H 1.09003 * 109.46850 * 150.18628 * 1 2 3 34 34 H 1.08006 * 119.99807 * 0.02562 * 3 2 1 35 35 H 1.08009 * 119.99935 * 179.79371 * 4 3 2 36 36 H 1.07997 * 120.00168 * 179.97438 * 5 4 3 37 37 H 1.07995 * 120.00364 * 179.97438 * 6 5 4 38 38 H 1.08995 * 117.49760 * 145.02765 * 10 8 7 39 39 H 1.09000 * 117.50040 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00370 * 359.97438 * 15 13 11 41 41 H 1.09003 * 109.46801 * 60.00182 * 16 15 13 42 42 H 1.08995 * 109.47045 * 300.00188 * 16 15 13 43 43 H 0.96695 * 114.00382 * 56.09921 * 18 17 16 44 44 H 1.08996 * 110.72695 * 324.78555 * 19 17 16 45 45 H 1.09002 * 110.72001 * 88.06367 * 19 17 16 46 46 H 1.09000 * 109.88165 * 141.60879 * 20 19 17 47 47 H 1.08996 * 109.88261 * 262.77631 * 20 19 17 48 48 H 0.96999 * 119.99911 * 179.97438 * 25 24 22 49 49 H 1.09004 * 110.36498 * 217.03293 * 30 21 20 50 50 H 1.09000 * 110.45813 * 94.76043 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1975 -0.0048 5 6 4.2717 0.0002 -0.0058 6 6 3.5807 -1.1968 -0.0024 7 6 2.1981 -1.1969 0.0039 8 6 1.4448 -2.5020 0.0086 9 1 0.4441 -2.4656 0.4392 10 6 2.2542 -3.7847 0.2100 11 6 1.6739 -3.4543 -1.1667 12 1 2.3693 -3.1367 -1.9437 13 6 0.4988 -4.2702 -1.6406 14 8 -0.5776 -4.1577 -1.0933 15 7 0.6443 -5.1254 -2.6719 16 6 -0.4980 -5.9190 -3.1322 17 6 -0.0662 -6.8016 -4.3050 18 8 0.4929 -6.0136 -5.3578 19 6 -1.2518 -7.6587 -4.8219 20 6 -0.5479 -8.8836 -5.4429 21 7 0.7837 -8.9804 -4.8273 22 6 1.7327 -9.9224 -5.1224 23 1 2.6847 -9.9080 -4.6125 24 6 1.4709 -10.8964 -6.0762 25 7 0.3107 -10.9141 -6.6973 26 14 2.7653 -12.1819 -6.4781 27 1 2.5878 -13.3579 -5.5889 28 1 2.6194 -12.6054 -7.8940 29 1 4.1176 -11.6043 -6.2711 30 6 0.9284 -7.8946 -3.8407 31 1 -0.3633 0.0033 1.0277 32 1 -0.3633 0.8882 -0.5167 33 1 -0.3633 -0.8917 -0.5110 34 1 1.6582 2.1327 0.0004 35 1 4.1203 2.1329 -0.0082 36 1 5.3517 0.0003 -0.0100 37 1 4.1207 -2.1321 -0.0035 38 1 1.7859 -4.5921 0.7729 39 1 3.3318 -3.6848 0.3395 40 1 1.5053 -5.2156 -3.1094 41 1 -1.2976 -5.2518 -3.4542 42 1 -0.8556 -6.5479 -2.3170 43 1 1.2370 -5.4608 -5.0828 44 1 -1.8971 -7.9617 -3.9973 45 1 -1.8194 -7.1158 -5.5777 46 1 -1.1205 -9.7868 -5.2317 47 1 -0.4495 -8.7480 -6.5199 48 1 0.1279 -11.5945 -7.3641 49 1 1.9476 -7.5081 -3.8487 50 1 0.6653 -8.2481 -2.8437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754761354.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:08 Heat of formation + Delta-G solvation = -33.150106 kcal Electronic energy + Delta-G solvation = -29536.286970 eV Core-core repulsion = 25528.740083 eV Total energy + Delta-G solvation = -4007.546887 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.47868 -40.57046 -39.80003 -37.37704 -36.75126 -35.26848 -34.03057 -33.70652 -31.64439 -31.32362 -29.88610 -27.83970 -27.54706 -26.02199 -24.88496 -24.21452 -22.30369 -22.24753 -21.48064 -21.32287 -20.86389 -19.00814 -18.75669 -17.93741 -17.23168 -16.94463 -16.71547 -16.44691 -16.21119 -15.78049 -15.70981 -15.67763 -15.16883 -15.04756 -14.87547 -14.66547 -14.33270 -13.94735 -13.89966 -13.68834 -13.54596 -13.25863 -13.15751 -13.04220 -12.92227 -12.82108 -12.78018 -12.37094 -12.08738 -12.06269 -12.03277 -11.87977 -11.79999 -11.73479 -11.55524 -11.40394 -11.01358 -10.88260 -10.68528 -10.19107 -9.64536 -9.36886 -8.88985 -7.84727 -5.20284 0.38641 0.51144 1.45613 1.45881 1.48156 1.56582 2.02106 2.49142 2.68107 3.09377 3.16297 3.33717 3.44836 3.51958 3.65524 3.69659 3.86568 3.92293 3.97227 3.98010 4.03338 4.14234 4.22217 4.28599 4.46709 4.47251 4.57808 4.65881 4.67587 4.76705 4.78033 4.80480 4.81520 4.92535 4.94656 4.95862 4.99566 5.07297 5.14124 5.20388 5.30213 5.32487 5.43942 5.63088 5.63376 5.66259 5.75797 5.77960 6.15241 6.18837 6.43313 6.80139 7.09203 7.16224 7.76715 8.40820 9.25981 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019227 B = 0.002005 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.958676 B =13959.546554 C =14756.540595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.130 4.130 4 C -0.126 4.126 5 C -0.130 4.130 6 C -0.121 4.121 7 C -0.067 4.067 8 C -0.087 4.087 9 H 0.109 0.891 10 C -0.130 4.130 11 C -0.177 4.177 12 H 0.146 0.854 13 C 0.543 3.457 14 O -0.579 6.579 15 N -0.712 5.712 16 C 0.119 3.881 17 C 0.123 3.877 18 O -0.552 6.552 19 C -0.122 4.122 20 C 0.190 3.810 21 N -0.621 5.621 22 C -0.240 4.240 23 H 0.086 0.914 24 C -0.071 4.071 25 N -0.953 5.953 26 Si 0.980 3.020 27 H -0.286 1.286 28 H -0.297 1.297 29 H -0.266 1.266 30 C 0.113 3.887 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.412 0.588 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.382 0.618 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.009 0.991 47 H 0.007 0.993 48 H 0.246 0.754 49 H 0.054 0.946 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.442 24.833 15.563 30.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.148 4.148 4 C -0.144 4.144 5 C -0.148 4.148 6 C -0.139 4.139 7 C -0.067 4.067 8 C -0.106 4.106 9 H 0.127 0.873 10 C -0.167 4.167 11 C -0.198 4.198 12 H 0.164 0.836 13 C 0.331 3.669 14 O -0.459 6.459 15 N -0.365 5.365 16 C -0.006 4.006 17 C 0.081 3.919 18 O -0.359 6.359 19 C -0.160 4.160 20 C 0.065 3.935 21 N -0.347 5.347 22 C -0.369 4.369 23 H 0.104 0.896 24 C -0.263 4.263 25 N -0.602 5.602 26 Si 0.809 3.191 27 H -0.213 1.213 28 H -0.223 1.223 29 H -0.191 1.191 30 C -0.012 4.012 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.151 0.849 40 H 0.249 0.751 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.231 0.769 44 H 0.113 0.887 45 H 0.100 0.900 46 H 0.027 0.973 47 H 0.026 0.974 48 H 0.055 0.945 49 H 0.072 0.928 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 5.237 24.427 15.450 29.373 hybrid contribution 0.947 -0.934 -0.576 1.449 sum 6.184 23.493 14.874 28.485 Atomic orbital electron populations 1.20838 0.90998 1.02923 1.02678 1.19965 0.96577 0.92953 0.99742 1.21274 0.94883 0.97644 1.00962 1.21463 0.94255 0.99143 0.99499 1.21425 1.01025 0.92228 1.00149 1.21296 0.93121 0.99473 1.00019 1.19053 0.93610 0.92381 1.01704 1.20976 1.00497 0.88746 1.00364 0.87251 1.23259 1.01593 0.97709 0.94164 1.22336 0.99444 1.03223 0.94800 0.83624 1.20057 0.88992 0.78986 0.78848 1.90684 1.29527 1.67995 1.57735 1.45767 1.14193 1.41848 1.34657 1.21726 0.89304 0.93851 0.95691 1.22392 0.94174 0.89141 0.86217 1.86633 1.52354 1.60226 1.36675 1.22803 0.96116 0.95604 1.01514 1.20826 0.84909 0.93127 0.94664 1.44640 1.14010 1.31625 1.44445 1.19468 0.95329 1.04677 1.17463 0.89632 1.25707 0.99468 1.01732 0.99420 1.70199 1.23699 1.36611 1.29647 0.85049 0.78721 0.78865 0.76507 1.21302 1.22347 1.19065 1.22347 0.97998 0.88644 0.92218 0.90686 0.90631 0.92316 0.84712 0.84187 0.84058 0.84156 0.88185 0.84887 0.75145 0.90643 0.90577 0.76921 0.88724 0.89970 0.97298 0.97440 0.94493 0.92756 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.33 71.24 0.66 -1.19 16 2 C -0.09 -1.56 5.88 -19.86 -0.12 -1.67 16 3 C -0.13 -1.85 9.70 22.27 0.22 -1.64 16 4 C -0.13 -1.57 10.05 22.27 0.22 -1.34 16 5 C -0.13 -1.60 10.05 22.27 0.22 -1.37 16 6 C -0.12 -1.64 9.30 22.27 0.21 -1.44 16 7 C -0.07 -1.12 5.61 -19.87 -0.11 -1.23 16 8 C -0.09 -1.52 4.65 -11.54 -0.05 -1.58 16 9 H 0.11 2.33 6.44 -2.39 -0.02 2.32 16 10 C -0.13 -1.82 9.56 30.60 0.29 -1.53 16 11 C -0.18 -2.93 5.82 -11.54 -0.07 -3.00 16 12 H 0.15 1.81 8.14 -2.39 -0.02 1.80 16 13 C 0.54 12.63 7.61 87.66 0.67 13.29 16 14 O -0.58 -18.05 16.26 -3.03 -0.05 -18.10 16 15 N -0.71 -15.07 5.20 -463.05 -2.41 -17.48 16 16 C 0.12 3.10 4.88 86.38 0.42 3.53 16 17 C 0.12 3.92 0.97 -9.40 -0.01 3.91 16 18 O -0.55 -17.76 13.20 -148.98 -1.97 -19.72 16 19 C -0.12 -4.50 6.16 31.78 0.20 -4.31 16 20 C 0.19 9.59 5.37 86.73 0.47 10.06 16 21 N -0.62 -31.64 3.39 -691.99 -2.35 -33.99 16 22 C -0.24 -13.40 10.28 84.03 0.86 -12.54 16 23 H 0.09 4.48 7.83 -2.91 -0.02 4.46 16 24 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 25 N -0.95 -58.32 10.31 21.65 0.22 -58.10 16 26 Si 0.98 45.87 29.55 68.60 2.03 47.90 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 30 C 0.11 4.29 6.21 86.85 0.54 4.83 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 33 H 0.06 1.11 6.66 -2.39 -0.02 1.09 16 34 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 35 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 36 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 37 H 0.14 1.32 6.02 -2.91 -0.02 1.31 16 38 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.13 1.20 6.18 -2.39 -0.01 1.18 16 40 H 0.41 6.71 7.28 -92.71 -0.67 6.04 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 43 H 0.38 8.63 7.69 -74.06 -0.57 8.06 16 44 H 0.09 3.08 8.04 -2.39 -0.02 3.06 16 45 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.01 0.50 7.51 -2.39 -0.02 0.48 16 47 H 0.01 0.43 7.38 -2.39 -0.02 0.41 16 48 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 49 H 0.05 1.87 8.14 -2.38 -0.02 1.86 16 50 H 0.03 1.24 7.98 -2.39 -0.02 1.22 16 Total: -1.00 -76.10 402.65 0.29 -75.81 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: -0.28 Total: 24.47 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.09 Total: -0.80 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -4.53 Total: -109.56 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.02 Total: -37.83 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.10 0.29 -75.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754761354.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.661 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds