Wall clock time and date at job start Wed Apr 1 2020 03:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38242 * 120.00307 * 2 1 4 4 C 1.38234 * 119.99966 * 179.97438 * 3 2 1 5 5 C 1.38231 * 120.00229 * 0.02704 * 4 3 2 6 6 C 1.50696 * 119.99887 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47648 * 89.99821 * 6 5 4 8 8 O 1.21283 * 119.99640 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00218 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99868 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.46734 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.82832 * 59.44247 * 11 10 9 13 13 C 1.54473 * 109.82812 * 180.42482 * 11 10 9 14 14 C 1.55510 * 102.38818 * 140.87746 * 13 11 10 15 15 C 1.53881 * 100.75539 * 327.03171 * 14 13 11 16 16 C 1.52377 * 115.67709 * 263.23108 * 15 14 13 17 17 N 1.47275 * 87.70343 * 218.74807 * 16 15 14 18 18 C 1.36935 * 135.93442 * 206.17406 * 17 16 15 19 19 H 1.08006 * 120.00018 * 7.56890 * 18 17 16 20 20 C 1.38818 * 120.00126 * 187.55930 * 18 17 16 21 21 N 1.31612 * 119.99984 * 174.51404 * 20 18 17 22 22 Si 1.86797 * 119.99618 * 354.51503 * 20 18 17 23 23 H 1.48497 * 109.46833 * 174.94589 * 22 20 18 24 24 H 1.48497 * 109.47523 * 294.94736 * 22 20 18 25 25 H 1.48508 * 109.47271 * 54.94852 * 22 20 18 26 26 C 1.47274 * 88.12736 * 26.43491 * 17 16 15 27 27 O 1.42402 * 106.67424 * 34.97284 * 15 14 13 28 28 C 1.38234 * 120.00124 * 0.24892 * 5 4 3 29 29 C 1.38238 * 120.00014 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47179 * 89.99666 * 1 2 3 31 31 H 1.08997 * 109.47201 * 209.99762 * 1 2 3 32 32 H 1.08999 * 109.46535 * 329.99547 * 1 2 3 33 33 H 1.08004 * 119.99387 * 359.97438 * 3 2 1 34 34 H 1.08001 * 119.99385 * 180.02562 * 4 3 2 35 35 H 1.09007 * 109.47188 * 329.99607 * 6 5 4 36 36 H 1.09007 * 109.46991 * 210.00016 * 6 5 4 37 37 H 0.97001 * 120.00019 * 0.02562 * 9 7 6 38 38 H 1.08999 * 109.46998 * 60.00501 * 10 9 7 39 39 H 1.08997 * 109.47459 * 300.00487 * 10 9 7 40 40 H 1.09001 * 110.82679 * 259.09880 * 13 11 10 41 41 H 1.09004 * 110.82915 * 22.45718 * 13 11 10 42 42 H 1.09002 * 111.16142 * 209.15506 * 14 13 11 43 43 H 1.09003 * 111.15706 * 84.90239 * 14 13 11 44 44 H 1.08996 * 113.51643 * 104.03947 * 16 15 14 45 45 H 1.09004 * 113.57605 * 333.46081 * 16 15 14 46 46 H 0.96998 * 120.00657 * 354.90781 * 21 20 18 47 47 H 1.08999 * 113.51507 * 88.27374 * 26 17 16 48 48 H 1.08997 * 113.50859 * 218.85232 * 26 17 16 49 49 H 1.07993 * 120.00184 * 179.73082 * 28 5 4 50 50 H 1.07997 * 119.99909 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0000 0.0005 7 6 6.2811 0.0000 1.4213 8 8 5.4930 0.0004 2.3431 9 7 7.6062 -0.0005 1.6675 10 6 8.0946 0.0000 3.0487 11 6 9.6246 -0.0001 3.0485 12 1 9.9944 0.8826 2.5268 13 6 10.1488 -0.0103 4.5016 14 6 11.3703 -0.9681 4.4090 15 6 10.8858 -1.9475 3.3254 16 6 10.2676 -3.2434 3.8355 17 7 10.9442 -3.9341 2.7245 18 6 10.7292 -5.0750 1.9985 19 1 9.8142 -5.6339 2.1292 20 6 11.6871 -5.5134 1.0945 21 7 11.5307 -6.6648 0.4766 22 14 13.1981 -4.4688 0.7552 23 1 14.1185 -5.2079 -0.1459 24 1 12.7860 -3.1977 0.1074 25 1 13.8912 -4.1706 2.0343 26 6 11.9567 -2.8647 2.7401 27 8 10.1115 -1.1866 2.4037 28 6 3.5806 -1.1972 -0.0053 29 6 2.1982 -1.1972 0.0005 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6582 2.1325 -0.0004 34 1 4.1206 2.1324 0.0010 35 1 6.1421 0.8900 -0.5134 36 1 6.1420 -0.8901 -0.5134 37 1 8.2365 -0.0006 0.9302 38 1 7.7309 -0.8895 3.5630 39 1 7.7317 0.8904 3.5621 40 1 10.4616 0.9880 4.8078 41 1 9.3945 -0.4041 5.1829 42 1 11.5407 -1.4813 5.3554 43 1 12.2646 -0.4351 4.0861 44 1 9.1802 -3.2646 3.7630 45 1 10.6308 -3.5422 4.8189 46 1 10.7852 -7.2413 0.7064 47 1 12.7836 -3.0587 3.4232 48 1 12.2903 -2.5673 1.7460 49 1 4.1205 -2.1324 -0.0097 50 1 1.6582 -2.1324 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755054532.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:22:13 Heat of formation + Delta-G solvation = 2.096554 kcal Electronic energy + Delta-G solvation = -29734.082935 eV Core-core repulsion = 25728.064458 eV Total energy + Delta-G solvation = -4006.018477 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.44993 -39.98570 -38.89862 -36.90857 -34.49262 -33.90919 -32.37898 -32.10291 -31.02090 -30.41253 -29.16918 -27.09786 -25.61353 -25.41958 -23.69754 -22.83809 -21.58102 -21.33707 -20.98547 -20.15060 -19.31726 -17.42636 -17.18925 -16.77495 -16.48551 -15.89457 -15.81308 -15.65924 -15.08049 -14.91040 -14.61755 -14.15817 -14.02394 -13.82461 -13.68733 -13.52586 -13.17124 -13.15575 -13.08269 -12.93557 -12.73686 -12.47805 -12.21918 -12.00214 -11.84960 -11.76042 -11.63050 -11.42880 -11.21782 -11.05726 -10.83695 -10.62880 -10.43685 -10.35925 -9.89033 -9.56494 -9.12155 -9.04757 -8.99224 -8.90693 -8.85459 -8.60396 -7.14516 -6.26184 -3.19132 1.19467 1.33406 2.66142 3.12387 3.40857 3.45579 3.64557 3.68573 3.86675 4.44630 4.51089 4.62236 4.62488 4.64627 4.73783 4.77651 4.89336 4.90340 4.91856 4.96802 5.00211 5.14078 5.27737 5.32050 5.34169 5.36722 5.40587 5.46369 5.51883 5.56423 5.59982 5.60926 5.69449 5.86636 5.93961 5.97029 5.97471 6.05638 6.15956 6.21991 6.29365 6.29895 6.39877 6.41565 6.47544 6.50048 6.52357 6.90985 7.12784 7.43637 7.51646 8.24349 8.26633 9.00722 9.52819 10.38537 11.24009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012424 B = 0.002486 C = 0.002200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2253.090297 B =11261.092488 C =12723.461002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.122 4.122 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.105 4.105 7 C 0.515 3.485 8 O -0.538 6.538 9 N -0.722 5.722 10 C 0.114 3.886 11 C 0.064 3.936 12 H 0.084 0.916 13 C -0.144 4.144 14 C -0.139 4.139 15 C 0.071 3.929 16 C 0.109 3.891 17 N -0.621 5.621 18 C -0.298 4.298 19 H 0.082 0.918 20 C -0.026 4.026 21 N -0.936 5.936 22 Si 1.070 2.930 23 H -0.295 1.295 24 H -0.291 1.291 25 H -0.288 1.288 26 C 0.102 3.898 27 O -0.332 6.332 28 C -0.100 4.100 29 C -0.119 4.119 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.102 0.898 36 H 0.106 0.894 37 H 0.406 0.594 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.046 0.954 46 H 0.260 0.740 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.122 0.878 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 20.504 2.226 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.140 4.140 4 C -0.121 4.121 5 C -0.068 4.068 6 C -0.144 4.144 7 C 0.301 3.699 8 O -0.415 6.415 9 N -0.374 5.374 10 C -0.010 4.010 11 C 0.006 3.994 12 H 0.102 0.898 13 C -0.182 4.182 14 C -0.177 4.177 15 C 0.030 3.970 16 C -0.017 4.017 17 N -0.349 5.349 18 C -0.424 4.424 19 H 0.099 0.901 20 C -0.225 4.225 21 N -0.579 5.579 22 Si 0.903 3.097 23 H -0.223 1.223 24 H -0.219 1.219 25 H -0.215 1.215 26 C -0.024 4.024 27 O -0.251 6.251 28 C -0.118 4.118 29 C -0.137 4.137 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.099 0.901 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.140 0.860 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.933 20.285 1.603 23.589 hybrid contribution -0.992 -0.180 0.924 1.368 sum -12.925 20.104 2.528 24.034 Atomic orbital electron populations 1.20777 0.91375 1.02697 1.02133 1.19907 0.95962 0.93287 0.99951 1.20939 0.94030 0.97404 1.01594 1.20926 0.94211 0.97250 0.99675 1.19254 0.93587 0.93588 1.00360 1.20687 0.93286 1.05540 0.94918 1.20497 0.82120 0.76062 0.91247 1.90713 1.55291 1.49201 1.46283 1.45869 1.06998 1.75336 1.09148 1.21768 0.93230 1.02501 0.83499 1.23088 0.92428 0.89850 0.94077 0.89779 1.23065 0.98398 1.00925 0.95806 1.23004 0.97876 0.96944 0.99915 1.23152 0.93721 0.90873 0.89226 1.22700 0.97745 0.89062 0.92227 1.45896 1.26904 1.26085 1.35991 1.20131 1.04109 0.98992 1.19159 0.90064 1.25707 1.01505 0.98870 0.96395 1.70906 1.33022 1.09761 1.44176 0.83724 0.75965 0.74212 0.75816 1.22265 1.21940 1.21531 1.22855 0.92855 0.86900 0.99762 1.88358 1.68852 1.33021 1.34826 1.21035 0.94295 0.97601 0.98860 1.20990 0.94072 0.97529 1.01119 0.91305 0.91600 0.91682 0.86263 0.86342 0.87990 0.87582 0.75924 0.91003 0.90834 0.89998 0.90105 0.89535 0.90138 0.93386 0.93639 0.93002 0.92420 0.92106 0.86010 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.01 36.00 0.36 -0.49 16 2 C -0.09 -0.94 5.88 -104.62 -0.62 -1.56 16 3 C -0.12 -1.25 9.70 -39.58 -0.38 -1.64 16 4 C -0.10 -1.13 9.70 -39.59 -0.38 -1.51 16 5 C -0.07 -0.80 4.37 -104.63 -0.46 -1.26 16 6 C -0.10 -1.10 5.83 -29.04 -0.17 -1.27 16 7 C 0.51 7.00 7.82 -10.99 -0.09 6.91 16 8 O -0.54 -9.34 16.03 5.55 0.09 -9.25 16 9 N -0.72 -8.99 5.47 -60.29 -0.33 -9.32 16 10 C 0.11 1.43 5.23 -4.04 -0.02 1.40 16 11 C 0.06 0.77 3.62 -25.96 -0.09 0.67 16 12 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 13 C -0.14 -1.46 6.56 -24.62 -0.16 -1.62 16 14 C -0.14 -1.69 6.49 -24.94 -0.16 -1.85 16 15 C 0.07 1.23 1.56 -90.66 -0.14 1.09 16 16 C 0.11 2.20 8.24 -7.88 -0.06 2.14 16 17 N -0.62 -15.68 3.70 -184.80 -0.68 -16.37 16 18 C -0.30 -8.83 11.08 -15.06 -0.17 -8.99 16 19 H 0.08 2.55 8.06 -52.48 -0.42 2.13 16 20 C -0.03 -0.80 5.50 -17.43 -0.10 -0.90 16 21 N -0.94 -30.07 13.70 55.49 0.76 -29.31 16 22 Si 1.07 27.14 25.17 -169.99 -4.28 22.86 16 23 H -0.30 -7.58 7.11 56.52 0.40 -7.18 16 24 H -0.29 -7.05 6.49 56.52 0.37 -6.69 16 25 H -0.29 -6.71 6.18 56.52 0.35 -6.36 16 26 C 0.10 2.16 5.25 -7.73 -0.04 2.12 16 27 O -0.33 -5.66 10.69 -35.23 -0.38 -6.04 16 28 C -0.10 -1.22 9.70 -39.58 -0.38 -1.61 16 29 C -0.12 -1.33 9.70 -39.58 -0.38 -1.71 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 32 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.12 0.96 8.06 -52.48 -0.42 0.53 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.10 0.79 8.09 -51.92 -0.42 0.37 16 36 H 0.11 1.03 8.08 -51.93 -0.42 0.61 16 37 H 0.41 4.50 8.40 -40.82 -0.34 4.15 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 42 H 0.09 0.96 7.93 -51.93 -0.41 0.54 16 43 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.05 0.84 7.99 -51.93 -0.41 0.43 16 46 H 0.26 8.26 8.73 -40.82 -0.36 7.91 16 47 H 0.06 1.15 7.59 -51.93 -0.39 0.76 16 48 H 0.06 1.36 4.80 -51.93 -0.25 1.12 16 49 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 50 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 403.70 15.07 6.08 6.08 Total: -1.00 -37.15 403.70 -10.40 -47.55 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -8.21 Total: 3.86 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: -3.45 Total: -10.07 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: -0.25 Total: -55.00 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.29 Total: -15.29 kcal Atomic # 14 Polarization: 27.14 SS G_CDS: -4.28 Total: 22.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -37.15 -10.40 -47.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755054532.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.644 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds