Wall clock time and date at job start Wed Apr 1 2020 03:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35903 * 116.99931 * 2 1 4 4 C 1.38753 * 120.05260 * 0.02562 * 3 2 1 5 5 C 1.38121 * 119.93705 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.06066 * 0.02562 * 5 4 3 7 7 C 1.50707 * 119.94437 * 179.97438 * 6 5 4 8 8 C 1.38247 * 120.10934 * 359.74764 * 6 5 4 9 9 C 1.38159 * 120.05416 * 0.50476 * 8 6 5 10 10 C 1.50702 * 120.02659 * 179.76794 * 9 8 6 11 11 C 1.50701 * 109.47117 * 264.72418 * 10 9 8 12 12 O 1.21281 * 120.00171 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99677 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99879 * 180.02562 * 13 11 10 15 15 C 1.50696 * 109.47023 * 180.02562 * 14 13 11 16 16 C 1.29455 * 117.69569 * 95.00076 * 15 14 13 17 17 C 1.50318 * 123.65480 * 180.85843 * 16 15 14 18 18 N 1.47008 * 109.16448 * 349.01943 * 17 16 15 19 19 C 1.36936 * 121.37624 * 222.96951 * 18 17 16 20 20 H 1.07994 * 119.99964 * 155.97115 * 19 18 17 21 21 C 1.38816 * 119.99774 * 335.97189 * 19 18 17 22 22 N 1.31617 * 120.00176 * 344.51365 * 21 19 18 23 23 Si 1.86800 * 119.99821 * 164.51319 * 21 19 18 24 24 H 1.48510 * 109.47335 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47325 * 119.99827 * 23 21 19 26 26 H 1.48504 * 109.47411 * 239.99934 * 23 21 19 27 27 C 1.47343 * 117.24848 * 42.94889 * 18 17 16 28 28 C 1.49962 * 117.69782 * 274.73746 * 15 14 13 29 29 H 1.08994 * 109.47393 * 60.00614 * 1 2 3 30 30 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47648 * 300.00256 * 1 2 3 32 32 H 1.07995 * 120.03039 * 0.02562 * 4 3 2 33 33 H 1.08011 * 119.96849 * 180.02562 * 5 4 3 34 34 H 1.08994 * 109.47129 * 89.99817 * 7 6 5 35 35 H 1.09002 * 109.46918 * 210.00206 * 7 6 5 36 36 H 1.08999 * 109.46937 * 329.99865 * 7 6 5 37 37 H 1.07998 * 119.96778 * 180.25301 * 8 6 5 38 38 H 1.09000 * 109.47048 * 144.72418 * 10 9 8 39 39 H 1.09001 * 109.46993 * 24.72674 * 10 9 8 40 40 H 0.97002 * 120.00382 * 0.02562 * 13 11 10 41 41 H 1.09001 * 109.47012 * 299.99936 * 14 13 11 42 42 H 1.09000 * 109.47345 * 59.99874 * 14 13 11 43 43 H 1.08006 * 118.17338 * 0.87773 * 16 15 14 44 44 H 1.09002 * 109.52726 * 108.92612 * 17 16 15 45 45 H 1.09002 * 109.52428 * 229.11116 * 17 16 15 46 46 H 0.96998 * 119.99828 * 179.97438 * 22 21 19 47 47 H 1.08997 * 109.77454 * 57.81334 * 27 18 17 48 48 H 1.09005 * 109.77365 * 178.61927 * 27 18 17 49 49 H 1.09001 * 109.31901 * 281.29646 * 28 15 14 50 50 H 1.09008 * 109.31603 * 40.71614 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6758 0.0005 7 6 3.9860 5.0186 0.0005 8 6 4.0559 2.5171 0.0047 9 6 3.4311 1.2848 -0.0011 10 6 4.2537 0.0222 -0.0018 11 6 4.4235 -0.4660 -1.4174 12 8 3.9260 0.1510 -2.3354 13 7 5.1292 -1.5876 -1.6633 14 6 5.2948 -2.0618 -3.0395 15 6 6.1173 -3.3245 -3.0402 16 6 5.4852 -4.4543 -3.0407 17 6 6.1704 -5.7922 -3.0226 18 7 7.6070 -5.6020 -3.2697 19 6 8.3011 -6.4289 -4.1121 20 1 9.2077 -6.0808 -4.5845 21 6 7.8392 -7.7145 -4.3589 22 7 6.9289 -8.2490 -3.5729 23 14 8.5098 -8.6858 -5.8068 24 1 9.5160 -7.8665 -6.5292 25 1 9.1491 -9.9321 -5.3134 26 1 7.3979 -9.0313 -6.7287 27 6 8.2691 -4.4847 -2.5738 28 6 7.6103 -3.1839 -3.0463 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 0.2128 2.3203 0.0014 33 1 1.3339 4.5114 0.0019 34 1 4.1513 5.3421 1.0281 35 1 4.9437 4.9384 -0.5137 36 1 3.3578 5.7464 -0.5129 37 1 5.1343 2.5752 0.0084 38 1 3.7470 -0.7419 0.5877 39 1 5.2326 0.2260 0.4322 40 1 5.5275 -2.0809 -0.9291 41 1 4.3160 -2.2660 -3.4737 42 1 5.8014 -1.2975 -3.6288 43 1 4.4055 -4.4345 -3.0552 44 1 6.0272 -6.2617 -2.0493 45 1 5.7480 -6.4283 -3.8004 46 1 6.6060 -9.1472 -3.7456 47 1 8.1448 -4.5957 -1.4966 48 1 9.3300 -4.4713 -2.8239 49 1 7.9465 -2.9515 -4.0568 50 1 7.8987 -2.3724 -2.3780 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755889980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:13:52 Heat of formation + Delta-G solvation = -37.289988 kcal Electronic energy + Delta-G solvation = -29338.702084 eV Core-core repulsion = 25330.975678 eV Total energy + Delta-G solvation = -4007.726406 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.47312 -40.45721 -39.29475 -38.54808 -36.38826 -34.53625 -34.20387 -32.65698 -32.43521 -31.42730 -29.51839 -28.73063 -28.00228 -26.69944 -25.73097 -24.37885 -23.20119 -22.76570 -22.07935 -21.12618 -19.50634 -18.97230 -18.32153 -17.49390 -17.37068 -17.14339 -16.89803 -16.57087 -16.23696 -15.78742 -15.68869 -15.38131 -15.22530 -15.19231 -14.83435 -14.70227 -14.49615 -14.33319 -14.08610 -13.92116 -13.69857 -13.26544 -13.19974 -12.97725 -12.92849 -12.84080 -12.80767 -12.64679 -12.60667 -12.21509 -12.19693 -12.08681 -11.74442 -11.70638 -11.69602 -11.27679 -11.00591 -10.69557 -10.05894 -9.81789 -9.62641 -8.90767 -8.75186 -7.88726 -5.29834 0.35742 0.49742 1.20310 1.45932 1.48039 1.58050 1.71263 2.41018 2.44552 2.50819 2.88301 3.28445 3.62550 3.67803 3.85319 3.86552 3.97102 4.00560 4.09375 4.21430 4.33999 4.36083 4.42990 4.44239 4.47964 4.54101 4.59926 4.65833 4.68408 4.74644 4.78200 4.80676 4.84882 4.90539 4.92477 5.10870 5.12705 5.21731 5.22802 5.37988 5.38539 5.45848 5.46313 5.48070 5.61649 5.70012 5.77294 5.91509 6.16533 6.33817 6.46578 6.62640 7.13256 7.30679 7.83389 8.37114 9.19983 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022686 B = 0.001930 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.958326 B =14506.288955 C =15291.556301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.114 3.886 4 C -0.214 4.214 5 C -0.089 4.089 6 C -0.134 4.134 7 C -0.106 4.106 8 C -0.082 4.082 9 C -0.114 4.114 10 C -0.087 4.087 11 C 0.516 3.484 12 O -0.582 6.582 13 N -0.714 5.714 14 C 0.169 3.831 15 C -0.137 4.137 16 C -0.144 4.144 17 C 0.206 3.794 18 N -0.616 5.616 19 C -0.255 4.255 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.967 3.033 24 H -0.267 1.267 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.139 3.861 28 C -0.083 4.083 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.079 0.921 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.141 0.859 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.413 0.587 41 H 0.054 0.946 42 H 0.066 0.934 43 H 0.109 0.891 44 H 0.015 0.985 45 H 0.056 0.944 46 H 0.249 0.751 47 H 0.030 0.970 48 H 0.060 0.940 49 H 0.063 0.937 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.181 25.068 12.045 29.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.250 6.250 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.107 4.107 6 C -0.134 4.134 7 C -0.162 4.162 8 C -0.100 4.100 9 C -0.115 4.115 10 C -0.126 4.126 11 C 0.304 3.696 12 O -0.462 6.462 13 N -0.366 5.366 14 C 0.046 3.954 15 C -0.137 4.137 16 C -0.164 4.164 17 C 0.081 3.919 18 N -0.340 5.340 19 C -0.385 4.385 20 H 0.089 0.911 21 C -0.251 4.251 22 N -0.586 5.586 23 Si 0.796 3.204 24 H -0.191 1.191 25 H -0.219 1.219 26 H -0.219 1.219 27 C 0.013 3.987 28 C -0.122 4.122 29 H 0.074 0.926 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.159 0.841 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.249 0.751 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.127 0.873 44 H 0.033 0.967 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.048 0.952 48 H 0.078 0.922 49 H 0.081 0.919 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.488 25.159 11.359 29.529 hybrid contribution -0.111 -1.392 -0.609 1.523 sum -10.599 23.767 10.750 28.156 Atomic orbital electron populations 1.23260 0.76912 1.05143 1.01990 1.86024 1.23066 1.27196 1.88669 1.19066 0.92221 0.84846 0.96941 1.21439 1.00842 0.92203 1.08735 1.21133 0.94305 0.97534 0.97702 1.20143 0.93998 0.96381 1.02889 1.20743 1.00369 0.92138 1.02999 1.20998 1.00531 0.90535 0.97937 1.18876 0.90609 0.95350 1.06664 1.20501 1.02865 0.96237 0.93018 1.21047 0.76861 0.79773 0.91914 1.90676 1.49711 1.57834 1.47955 1.46032 1.54558 1.26712 1.09317 1.20165 0.98024 0.93513 0.83735 1.20609 0.95867 0.93127 1.04129 1.22936 0.99599 0.95568 0.98333 1.19389 0.83300 0.91265 0.97978 1.44425 1.04745 1.32867 1.51940 1.19549 1.07719 0.92814 1.18376 0.91144 1.25748 1.00586 0.97269 1.01483 1.70170 1.34840 1.15155 1.38468 0.85198 0.77570 0.78282 0.79360 1.19118 1.21885 1.21918 1.21191 0.95962 0.87025 0.94485 1.20725 0.91387 0.98502 1.01583 0.92626 0.87034 0.91081 0.83906 0.83678 0.90195 0.91400 0.90861 0.84114 0.86896 0.85095 0.75079 0.92785 0.91568 0.87316 0.96722 0.92607 0.94144 0.95185 0.92180 0.91905 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.34 -7.80 9.63 -92.46 -0.89 -8.69 16 3 C 0.11 2.68 6.66 22.51 0.15 2.83 16 4 C -0.21 -4.13 9.04 22.37 0.20 -3.93 16 5 C -0.09 -1.52 9.69 22.25 0.22 -1.31 16 6 C -0.13 -2.36 5.88 -19.85 -0.12 -2.47 16 7 C -0.11 -1.23 10.01 71.24 0.71 -0.51 16 8 C -0.08 -1.61 9.33 22.25 0.21 -1.41 16 9 C -0.11 -2.58 4.39 -19.77 -0.09 -2.66 16 10 C -0.09 -1.71 5.55 29.10 0.16 -1.55 16 11 C 0.52 13.79 7.82 87.66 0.69 14.47 16 12 O -0.58 -20.71 16.03 -3.03 -0.05 -20.76 16 13 N -0.71 -17.52 5.55 -466.78 -2.59 -20.11 16 14 C 0.17 4.91 5.66 85.63 0.48 5.40 16 15 C -0.14 -4.47 5.22 -15.14 -0.08 -4.55 16 16 C -0.14 -5.46 9.47 27.10 0.26 -5.20 16 17 C 0.21 9.97 5.23 85.42 0.45 10.42 16 18 N -0.62 -30.76 3.01 -703.03 -2.11 -32.87 16 19 C -0.25 -13.99 9.71 84.03 0.82 -13.18 16 20 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 21 C -0.06 -3.15 5.01 84.86 0.43 -2.72 16 22 N -0.94 -55.54 11.08 21.65 0.24 -55.30 16 23 Si 0.97 45.19 29.58 68.60 2.03 47.22 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.14 5.46 6.59 86.31 0.57 6.03 16 28 C -0.08 -2.67 5.95 29.71 0.18 -2.49 16 29 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16 32 H 0.14 2.09 6.30 -2.91 -0.02 2.07 16 33 H 0.15 1.68 8.06 -2.90 -0.02 1.65 16 34 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.07 0.75 8.09 -2.39 -0.02 0.73 16 36 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 37 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 38 H 0.11 2.04 7.69 -2.39 -0.02 2.02 16 39 H 0.13 1.71 8.05 -2.39 -0.02 1.69 16 40 H 0.41 8.30 8.46 -92.71 -0.78 7.52 16 41 H 0.05 1.71 7.78 -2.39 -0.02 1.69 16 42 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 43 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 44 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 45 H 0.06 3.08 6.41 -2.39 -0.02 3.07 16 46 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 47 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.06 2.30 7.96 -2.38 -0.02 2.28 16 49 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 50 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -73.76 408.37 3.12 -70.64 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.15 Total: 21.27 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 6.34 Total: -1.40 kcal Atomic # 7 Polarization: -103.82 SS G_CDS: -4.46 Total: -108.29 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.94 Total: -29.45 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -73.76 3.12 -70.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755889980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.351 kcal (2) G-P(sol) polarization free energy of solvation -73.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds