Wall clock time and date at job start Wed Apr 1 2020 03:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35656 * 117.00429 * 2 1 4 4 C 1.38710 * 120.14618 * 359.97438 * 3 2 1 5 5 C 1.38058 * 120.08575 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.38856 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.85076 * 180.02562 * 6 5 4 8 8 C 1.37796 * 120.29648 * 359.78635 * 6 5 4 9 9 C 1.39700 * 119.90859 * 0.46687 * 8 6 5 10 10 C 1.47540 * 120.18893 * 179.78773 * 9 8 6 11 11 O 1.21591 * 119.99983 * 149.50846 * 10 9 8 12 12 N 1.34773 * 120.00156 * 329.50368 * 10 9 8 13 13 C 1.46949 * 120.44790 * 175.17976 * 12 10 9 14 14 C 1.53586 * 108.53245 * 125.72399 * 13 12 10 15 15 H 1.08994 * 110.60063 * 172.77536 * 14 13 12 16 16 C 1.53367 * 108.69004 * 294.37171 * 14 13 12 17 17 C 1.53014 * 109.27328 * 60.29401 * 16 14 13 18 18 C 1.53011 * 109.79549 * 60.56824 * 17 16 14 19 19 C 1.53364 * 109.25507 * 299.42267 * 18 17 16 20 20 H 1.09000 * 110.60089 * 178.14359 * 19 18 17 21 21 C 1.46945 * 120.44273 * 355.16369 * 12 10 9 22 22 N 1.47570 * 107.76650 * 51.15266 * 14 13 12 23 23 C 1.36937 * 121.61470 * 120.47740 * 22 14 13 24 24 H 1.08004 * 119.99613 * 27.23026 * 23 22 14 25 25 C 1.38810 * 120.00531 * 207.23896 * 23 22 14 26 26 N 1.31621 * 119.99977 * 18.22722 * 25 23 22 27 27 Si 1.86802 * 120.00198 * 198.22941 * 25 23 22 28 28 H 1.48500 * 109.46648 * 59.99674 * 27 25 23 29 29 H 1.48494 * 109.47140 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46973 * 300.00007 * 27 25 23 31 31 H 1.08995 * 109.47758 * 300.00680 * 1 2 3 32 32 H 1.09004 * 109.46547 * 60.00729 * 1 2 3 33 33 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08007 * 119.95830 * 0.04346 * 4 3 2 35 35 H 1.07993 * 119.80667 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.47036 * 89.99896 * 7 6 5 37 37 H 1.08998 * 109.47661 * 210.00055 * 7 6 5 38 38 H 1.09001 * 109.47120 * 330.00325 * 7 6 5 39 39 H 1.08006 * 120.04086 * 180.25499 * 8 6 5 40 40 H 1.09005 * 109.62113 * 6.02027 * 13 12 10 41 41 H 1.08994 * 109.79244 * 245.54074 * 13 12 10 42 42 H 1.09008 * 109.50467 * 180.23049 * 16 14 13 43 43 H 1.09003 * 109.50553 * 300.35014 * 16 14 13 44 44 H 1.08995 * 109.41153 * 300.47099 * 17 16 14 45 45 H 1.08997 * 109.36358 * 180.63582 * 17 16 14 46 46 H 1.09001 * 109.50381 * 179.48586 * 18 17 16 47 47 H 1.08999 * 109.53890 * 59.37730 * 18 17 16 48 48 H 1.08998 * 109.62539 * 353.97006 * 21 12 10 49 49 H 1.09000 * 109.62573 * 114.54296 * 21 12 10 50 50 H 0.96999 * 120.00050 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6837 -0.0005 7 6 3.9768 5.0320 -0.0005 8 6 4.0668 2.5362 0.0050 9 6 3.4441 1.2857 0.0002 10 6 4.2550 0.0531 0.0013 11 8 3.8289 -0.9544 0.5320 12 7 5.4680 0.0439 -0.5861 13 6 6.3281 -1.1444 -0.4999 14 6 6.7251 -1.5639 -1.9230 15 1 7.4650 -2.3638 -1.8947 16 6 5.4658 -2.0199 -2.6703 17 6 4.4684 -0.8612 -2.7330 18 6 5.0911 0.3185 -3.4826 19 6 6.3486 0.7838 -2.7381 20 1 6.8289 1.6039 -3.2719 21 6 5.9480 1.2220 -1.3216 22 7 7.2572 -0.3722 -2.6118 23 6 8.5325 -0.3404 -3.1097 24 1 9.0178 -1.2573 -3.4100 25 6 9.2014 0.8700 -3.2282 26 7 8.7853 1.9208 -2.5535 27 14 10.6922 1.0079 -4.3454 28 1 10.2988 0.6774 -5.7386 29 1 11.2209 2.3947 -4.2965 30 1 11.7416 0.0612 -3.8895 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2138 2.3195 -0.0002 35 1 1.3304 4.5077 -0.0019 36 1 4.1387 5.3573 1.0272 37 1 4.9356 4.9596 -0.5140 38 1 3.3430 5.7544 -0.5147 39 1 5.1447 2.6037 0.0095 40 1 5.7836 -1.9562 -0.0174 41 1 7.2234 -0.9110 0.0763 42 1 5.7334 -2.3249 -3.6820 43 1 5.0144 -2.8606 -2.1435 44 1 4.2092 -0.5512 -1.7208 45 1 3.5682 -1.1871 -3.2540 46 1 4.3736 1.1376 -3.5324 47 1 5.3598 0.0080 -4.4923 48 1 5.1536 1.9661 -1.3796 49 1 6.8131 1.6450 -0.8109 50 1 9.2530 2.7665 -2.6360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039738345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:17 Heat of formation + Delta-G solvation = 22.922466 kcal Electronic energy + Delta-G solvation = -33031.924847 eV Core-core repulsion = 29026.809449 eV Total energy + Delta-G solvation = -4005.115398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.00526 -39.63901 -37.69219 -37.32565 -33.85466 -33.01564 -32.21245 -31.88644 -30.86323 -30.17852 -27.90276 -26.93405 -25.91397 -25.53203 -24.18756 -22.85083 -21.88944 -21.43725 -20.80212 -19.44067 -18.44165 -17.77292 -17.03486 -16.46152 -15.93321 -15.74266 -15.29059 -14.84901 -14.63964 -14.32505 -14.18130 -13.98537 -13.71162 -13.62873 -13.44322 -13.19763 -13.00206 -12.75949 -12.42332 -12.27955 -12.17032 -12.00375 -11.96257 -11.81461 -11.56936 -11.26606 -11.13851 -11.00453 -10.91536 -10.69224 -10.59103 -10.32188 -10.04697 -10.03296 -9.97972 -9.50631 -9.43502 -9.18270 -8.80388 -8.56542 -8.03418 -7.65935 -6.58557 -5.86100 -3.25124 1.03664 1.40941 3.17061 3.29757 3.36142 3.41784 3.43946 3.58643 3.94274 4.45217 4.67987 4.81062 4.89121 4.98185 5.08247 5.20121 5.24595 5.30660 5.31790 5.38685 5.46850 5.60672 5.66893 5.75958 5.81534 5.84828 5.89771 5.93173 5.97992 6.03968 6.11370 6.21076 6.22595 6.35034 6.42646 6.48387 6.54891 6.57308 6.61744 6.66722 6.74377 6.75286 6.82717 6.94085 7.11915 7.18578 7.30556 7.41862 7.55381 7.74698 8.10343 8.35736 8.76053 9.13180 9.75241 10.37702 11.22632 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004386 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.100739 B = 6382.061693 C = 7609.688956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.287 6.287 3 C 0.173 3.827 4 C -0.221 4.221 5 C -0.060 4.060 6 C -0.135 4.135 7 C -0.109 4.109 8 C -0.052 4.052 9 C -0.158 4.158 10 C 0.560 3.440 11 O -0.543 6.543 12 N -0.586 5.586 13 C 0.102 3.898 14 C 0.154 3.846 15 H 0.077 0.923 16 C -0.120 4.120 17 C -0.138 4.138 18 C -0.131 4.131 19 C 0.179 3.821 20 H 0.115 0.885 21 C 0.081 3.919 22 N -0.579 5.579 23 C -0.245 4.245 24 H 0.066 0.934 25 C 0.004 3.996 26 N -0.903 5.903 27 Si 0.903 3.097 28 H -0.285 1.285 29 H -0.291 1.291 30 H -0.284 1.284 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.152 0.848 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.089 0.911 45 H 0.029 0.971 46 H 0.041 0.959 47 H 0.052 0.948 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.396 4.134 4.482 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.199 6.199 3 C 0.125 3.875 4 C -0.239 4.239 5 C -0.079 4.079 6 C -0.136 4.136 7 C -0.166 4.166 8 C -0.070 4.070 9 C -0.162 4.162 10 C 0.350 3.650 11 O -0.422 6.422 12 N -0.318 5.318 13 C -0.022 4.022 14 C 0.046 3.954 15 H 0.095 0.905 16 C -0.159 4.159 17 C -0.176 4.176 18 C -0.171 4.171 19 C 0.072 3.928 20 H 0.132 0.868 21 C -0.042 4.042 22 N -0.300 5.300 23 C -0.374 4.374 24 H 0.084 0.916 25 C -0.194 4.194 26 N -0.548 5.548 27 Si 0.733 3.267 28 H -0.212 1.212 29 H -0.217 1.217 30 H -0.210 1.210 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.148 0.852 35 H 0.143 0.857 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.170 0.830 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.106 0.894 45 H 0.048 0.952 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.387 3.552 4.749 15.562 hybrid contribution 0.483 0.332 -0.722 0.930 sum -13.904 3.884 4.027 14.987 Atomic orbital electron populations 1.23089 0.79042 1.03992 1.00942 1.86300 1.20538 1.25857 1.87184 1.18961 0.90894 0.84653 0.92965 1.21125 0.99914 0.92050 1.10841 1.20925 0.93983 0.96875 0.96072 1.19756 0.93456 0.95634 1.04731 1.20726 1.00839 0.92848 1.02188 1.21630 1.01177 0.90107 0.94079 1.19357 0.90767 0.94575 1.11485 1.17734 0.81274 0.87361 0.78661 1.90753 1.70805 1.34006 1.46623 1.48098 1.15715 1.16815 1.51188 1.22199 0.93186 0.87317 0.99482 1.21222 0.93679 0.91070 0.89451 0.90477 1.21902 0.96934 0.97006 1.00097 1.22075 0.96599 0.96158 1.02772 1.22105 0.98368 0.96995 0.99591 1.21090 0.87757 0.92081 0.91916 0.86795 1.23104 0.98995 0.86324 0.95737 1.44360 1.10476 1.10859 1.64300 1.19132 0.90131 0.93602 1.34579 0.91634 1.24923 0.97854 0.97158 0.99471 1.69928 1.42169 1.01556 1.41123 0.86361 0.82610 0.76674 0.81060 1.21201 1.21691 1.21018 0.92786 0.92824 0.88250 0.85181 0.85705 0.91471 0.90956 0.91771 0.83050 0.90386 0.91766 0.92856 0.93459 0.89358 0.95198 0.93998 0.92936 0.90125 0.89415 0.93568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.29 -4.59 9.00 -37.80 -0.34 -4.93 16 3 C 0.17 2.70 6.67 -38.70 -0.26 2.45 16 4 C -0.22 -2.69 9.03 -39.47 -0.36 -3.05 16 5 C -0.06 -0.68 9.68 -39.53 -0.38 -1.06 16 6 C -0.14 -1.69 5.87 -104.67 -0.61 -2.31 16 7 C -0.11 -1.09 10.00 36.00 0.36 -0.73 16 8 C -0.05 -0.78 7.02 -39.20 -0.28 -1.05 16 9 C -0.16 -2.72 5.47 -104.85 -0.57 -3.30 16 10 C 0.56 11.14 4.67 -12.47 -0.06 11.08 16 11 O -0.54 -12.11 15.12 -13.84 -0.21 -12.32 16 12 N -0.59 -11.62 1.65 -173.47 -0.29 -11.90 16 13 C 0.10 2.06 5.90 -3.49 -0.02 2.04 16 14 C 0.15 3.21 3.61 -66.85 -0.24 2.97 16 15 H 0.08 1.57 8.03 -51.93 -0.42 1.15 16 16 C -0.12 -2.36 5.58 -26.53 -0.15 -2.51 16 17 C -0.14 -2.74 5.55 -26.72 -0.15 -2.88 16 18 C -0.13 -2.65 5.58 -26.54 -0.15 -2.79 16 19 C 0.18 3.94 2.63 -66.84 -0.18 3.76 16 20 H 0.11 2.81 5.95 -51.93 -0.31 2.50 16 21 C 0.08 1.61 4.13 -3.49 -0.01 1.60 16 22 N -0.58 -13.60 2.54 -155.44 -0.39 -14.00 16 23 C -0.25 -6.33 9.73 -15.06 -0.15 -6.48 16 24 H 0.07 1.69 7.89 -52.48 -0.41 1.28 16 25 C 0.00 0.11 4.99 -17.43 -0.09 0.02 16 26 N -0.90 -23.58 10.72 55.49 0.59 -22.99 16 27 Si 0.90 20.77 29.59 -169.99 -5.03 15.74 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 31 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 32 H 0.05 0.46 7.66 -51.93 -0.40 0.06 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 39 H 0.15 2.32 5.45 -52.48 -0.29 2.03 16 40 H 0.08 1.55 6.98 -51.93 -0.36 1.19 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 42 H 0.05 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 1.81 2.50 -52.45 -0.13 1.68 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.45 4.00 -51.93 -0.21 1.24 16 49 H 0.09 1.93 7.64 -51.93 -0.40 1.53 16 50 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 373.58 15.07 5.63 5.63 Total: -1.00 -30.10 373.58 -9.76 -39.86 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.43 Total: 5.90 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: -2.30 Total: -1.00 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.09 Total: -48.89 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: -0.55 Total: -17.25 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.03 Total: 15.74 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.10 -9.76 -39.86 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039738345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.780 kcal (2) G-P(sol) polarization free energy of solvation -30.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds