Wall clock time and date at job start Wed Apr 1 2020 03:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35656 * 117.00429 * 2 1 4 4 C 1.38710 * 120.14618 * 359.97438 * 3 2 1 5 5 C 1.38058 * 120.08575 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.38856 * 359.97438 * 5 4 3 7 7 C 1.50691 * 119.85076 * 180.02562 * 6 5 4 8 8 C 1.37796 * 120.29648 * 359.78635 * 6 5 4 9 9 C 1.39700 * 119.90859 * 0.46687 * 8 6 5 10 10 C 1.47540 * 120.18893 * 179.78773 * 9 8 6 11 11 O 1.21591 * 119.99983 * 149.50846 * 10 9 8 12 12 N 1.34773 * 120.00156 * 329.50368 * 10 9 8 13 13 C 1.46949 * 120.44790 * 175.17976 * 12 10 9 14 14 C 1.53586 * 108.53245 * 125.72399 * 13 12 10 15 15 H 1.08994 * 110.60063 * 172.77536 * 14 13 12 16 16 C 1.53367 * 108.69004 * 294.37171 * 14 13 12 17 17 C 1.53014 * 109.27328 * 60.29401 * 16 14 13 18 18 C 1.53011 * 109.79549 * 60.56824 * 17 16 14 19 19 C 1.53364 * 109.25507 * 299.42267 * 18 17 16 20 20 H 1.09000 * 110.60089 * 178.14359 * 19 18 17 21 21 C 1.46945 * 120.44273 * 355.16369 * 12 10 9 22 22 N 1.47570 * 107.76650 * 51.15266 * 14 13 12 23 23 C 1.36937 * 121.61470 * 120.47740 * 22 14 13 24 24 H 1.08004 * 119.99613 * 27.23026 * 23 22 14 25 25 C 1.38810 * 120.00531 * 207.23896 * 23 22 14 26 26 N 1.31621 * 119.99977 * 18.22722 * 25 23 22 27 27 Si 1.86802 * 120.00198 * 198.22941 * 25 23 22 28 28 H 1.48500 * 109.46648 * 59.99674 * 27 25 23 29 29 H 1.48494 * 109.47140 * 179.97438 * 27 25 23 30 30 H 1.48497 * 109.46973 * 300.00007 * 27 25 23 31 31 H 1.08995 * 109.47758 * 300.00680 * 1 2 3 32 32 H 1.09004 * 109.46547 * 60.00729 * 1 2 3 33 33 H 1.08997 * 109.47264 * 179.97438 * 1 2 3 34 34 H 1.08007 * 119.95830 * 0.04346 * 4 3 2 35 35 H 1.07993 * 119.80667 * 179.97438 * 5 4 3 36 36 H 1.09008 * 109.47036 * 89.99896 * 7 6 5 37 37 H 1.08998 * 109.47661 * 210.00055 * 7 6 5 38 38 H 1.09001 * 109.47120 * 330.00325 * 7 6 5 39 39 H 1.08006 * 120.04086 * 180.25499 * 8 6 5 40 40 H 1.09005 * 109.62113 * 6.02027 * 13 12 10 41 41 H 1.08994 * 109.79244 * 245.54074 * 13 12 10 42 42 H 1.09008 * 109.50467 * 180.23049 * 16 14 13 43 43 H 1.09003 * 109.50553 * 300.35014 * 16 14 13 44 44 H 1.08995 * 109.41153 * 300.47099 * 17 16 14 45 45 H 1.08997 * 109.36358 * 180.63582 * 17 16 14 46 46 H 1.09001 * 109.50381 * 179.48586 * 18 17 16 47 47 H 1.08999 * 109.53890 * 59.37730 * 18 17 16 48 48 H 1.08998 * 109.62539 * 353.97006 * 21 12 10 49 49 H 1.09000 * 109.62573 * 114.54296 * 21 12 10 50 50 H 0.96999 * 120.00050 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2925 2.3740 -0.0005 5 6 1.9206 3.6034 -0.0011 6 6 3.3038 3.6837 -0.0005 7 6 3.9768 5.0320 -0.0005 8 6 4.0668 2.5362 0.0050 9 6 3.4441 1.2857 0.0002 10 6 4.2550 0.0531 0.0013 11 8 3.8289 -0.9544 0.5320 12 7 5.4680 0.0439 -0.5861 13 6 6.3281 -1.1444 -0.4999 14 6 6.7251 -1.5639 -1.9230 15 1 7.4650 -2.3638 -1.8947 16 6 5.4658 -2.0199 -2.6703 17 6 4.4684 -0.8612 -2.7330 18 6 5.0911 0.3185 -3.4826 19 6 6.3486 0.7838 -2.7381 20 1 6.8289 1.6039 -3.2719 21 6 5.9480 1.2220 -1.3216 22 7 7.2572 -0.3722 -2.6118 23 6 8.5325 -0.3404 -3.1097 24 1 9.0178 -1.2573 -3.4100 25 6 9.2014 0.8700 -3.2282 26 7 8.7853 1.9208 -2.5535 27 14 10.6922 1.0079 -4.3454 28 1 10.2988 0.6774 -5.7386 29 1 11.2209 2.3947 -4.2965 30 1 11.7416 0.0612 -3.8895 31 1 -0.3634 0.5139 0.8898 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0276 -0.0005 34 1 0.2138 2.3195 -0.0002 35 1 1.3304 4.5077 -0.0019 36 1 4.1387 5.3573 1.0272 37 1 4.9356 4.9596 -0.5140 38 1 3.3430 5.7544 -0.5147 39 1 5.1447 2.6037 0.0095 40 1 5.7836 -1.9562 -0.0174 41 1 7.2234 -0.9110 0.0763 42 1 5.7334 -2.3249 -3.6820 43 1 5.0144 -2.8606 -2.1435 44 1 4.2092 -0.5512 -1.7208 45 1 3.5682 -1.1871 -3.2540 46 1 4.3736 1.1376 -3.5324 47 1 5.3598 0.0080 -4.4923 48 1 5.1536 1.9661 -1.3796 49 1 6.8131 1.6450 -0.8109 50 1 9.2530 2.7665 -2.6360 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039738345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:43:16 Heat of formation + Delta-G solvation = 8.572299 kcal Electronic energy + Delta-G solvation = -33032.547116 eV Core-core repulsion = 29026.809449 eV Total energy + Delta-G solvation = -4005.737668 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.42738 -40.87280 -39.00180 -38.64268 -35.54511 -34.75028 -33.73639 -32.94515 -32.06271 -32.02572 -28.77818 -28.61612 -27.13202 -26.80563 -25.79265 -24.33823 -23.22283 -23.08051 -22.17073 -20.83084 -20.06227 -19.12631 -18.39190 -17.79408 -17.34129 -16.93967 -16.72816 -16.35810 -16.31565 -15.69869 -15.41510 -15.36492 -15.12289 -14.83229 -14.66192 -14.57211 -14.46888 -14.34567 -14.03732 -13.84838 -13.50978 -13.18311 -13.05245 -12.96335 -12.82702 -12.79676 -12.62526 -12.45192 -12.39647 -12.16116 -11.99193 -11.87127 -11.69854 -11.67746 -11.62867 -11.16044 -11.14428 -10.73405 -10.51850 -9.90847 -9.41018 -9.01488 -8.42477 -7.82288 -5.23629 -0.06471 0.38898 1.50966 1.53385 1.58851 1.82493 2.09475 2.36874 2.55278 2.77095 3.31994 3.49413 3.53757 3.81664 3.93620 4.08287 4.15147 4.16089 4.20413 4.24333 4.30633 4.38995 4.40843 4.41550 4.47760 4.48679 4.67055 4.70668 4.73904 4.75644 4.81762 4.87555 4.93693 4.94275 4.97861 5.01849 5.10100 5.11993 5.19390 5.26404 5.28981 5.31400 5.46607 5.50589 5.59943 5.60639 5.70170 5.80883 5.85354 6.40628 6.43841 6.57225 7.18590 7.22307 7.84291 8.45169 9.23482 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014031 B = 0.004386 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.100739 B = 6382.061693 C = 7609.688956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.159 3.841 4 C -0.211 4.211 5 C -0.047 4.047 6 C -0.134 4.134 7 C -0.109 4.109 8 C -0.066 4.066 9 C -0.193 4.193 10 C 0.561 3.439 11 O -0.574 6.574 12 N -0.588 5.588 13 C 0.107 3.893 14 C 0.150 3.850 15 H 0.078 0.922 16 C -0.113 4.113 17 C -0.137 4.137 18 C -0.121 4.121 19 C 0.176 3.824 20 H 0.087 0.913 21 C 0.100 3.900 22 N -0.591 5.591 23 C -0.261 4.261 24 H 0.060 0.940 25 C -0.035 4.035 26 N -0.917 5.917 27 Si 0.959 3.041 28 H -0.286 1.286 29 H -0.292 1.292 30 H -0.283 1.283 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.108 0.892 34 H 0.164 0.836 35 H 0.167 0.833 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.138 0.862 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.103 0.897 49 H 0.061 0.939 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.927 5.831 4.341 18.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.111 3.889 4 C -0.230 4.230 5 C -0.064 4.064 6 C -0.134 4.134 7 C -0.165 4.165 8 C -0.085 4.085 9 C -0.196 4.196 10 C 0.353 3.647 11 O -0.455 6.455 12 N -0.319 5.319 13 C -0.017 4.017 14 C 0.043 3.957 15 H 0.096 0.904 16 C -0.152 4.152 17 C -0.174 4.174 18 C -0.161 4.161 19 C 0.069 3.931 20 H 0.105 0.895 21 C -0.023 4.023 22 N -0.313 5.313 23 C -0.391 4.391 24 H 0.078 0.922 25 C -0.231 4.231 26 N -0.562 5.562 27 Si 0.789 3.211 28 H -0.213 1.213 29 H -0.218 1.218 30 H -0.209 1.209 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.127 0.873 34 H 0.182 0.818 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.103 0.897 45 H 0.058 0.942 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.121 0.879 49 H 0.079 0.921 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -16.935 5.247 4.609 18.318 hybrid contribution 1.174 -0.174 -0.624 1.341 sum -15.760 5.074 3.985 17.030 Atomic orbital electron populations 1.23406 0.76434 1.05367 1.02707 1.86243 1.23421 1.26640 1.87297 1.19190 0.90527 0.85810 0.93366 1.21512 1.01436 0.91005 1.08997 1.21418 0.93567 0.98129 0.93335 1.20075 0.94295 0.95659 1.03407 1.20785 1.00623 0.91950 1.03167 1.21538 1.00778 0.90579 0.95556 1.19289 0.91659 0.93724 1.14975 1.18210 0.80906 0.88119 0.77461 1.90711 1.71389 1.35538 1.47884 1.48082 1.15981 1.16410 1.51466 1.22048 0.92926 0.87852 0.98902 1.21318 0.94288 0.90370 0.89739 0.90423 1.21815 0.96228 0.97365 0.99794 1.22054 0.96852 0.95932 1.02607 1.21977 0.97735 0.97672 0.98669 1.21034 0.88062 0.90988 0.93003 0.89492 1.22842 0.98745 0.86640 0.94078 1.44498 1.10170 1.11906 1.64737 1.19323 0.91231 0.93609 1.34972 0.92239 1.25500 1.00067 0.97026 1.00534 1.70050 1.42886 1.01570 1.41706 0.85482 0.80053 0.76262 0.79347 1.21265 1.21814 1.20928 0.90909 0.90957 0.87331 0.81831 0.81565 0.90292 0.92043 0.89331 0.84475 0.90087 0.93070 0.93103 0.92290 0.89724 0.94181 0.92397 0.93859 0.87930 0.92075 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.27 9.81 113.37 1.11 1.38 16 2 O -0.32 -9.95 9.00 -71.42 -0.64 -10.60 16 3 C 0.16 4.71 6.67 22.84 0.15 4.86 16 4 C -0.21 -4.35 9.03 22.34 0.20 -4.15 16 5 C -0.05 -0.84 9.68 22.30 0.22 -0.63 16 6 C -0.13 -3.00 5.87 -19.90 -0.12 -3.12 16 7 C -0.11 -1.86 10.00 71.23 0.71 -1.15 16 8 C -0.07 -1.96 7.02 22.52 0.16 -1.80 16 9 C -0.19 -6.59 5.47 -20.01 -0.11 -6.70 16 10 C 0.56 22.75 4.67 86.70 0.41 23.16 16 11 O -0.57 -26.18 15.12 14.28 0.22 -25.96 16 12 N -0.59 -24.00 1.65 -821.00 -1.35 -25.35 16 13 C 0.11 4.48 5.90 86.49 0.51 4.99 16 14 C 0.15 6.42 3.61 45.11 0.16 6.59 16 15 H 0.08 3.25 8.03 -2.39 -0.02 3.23 16 16 C -0.11 -4.44 5.58 30.72 0.17 -4.26 16 17 C -0.14 -5.36 5.55 30.60 0.17 -5.19 16 18 C -0.12 -4.88 5.58 30.72 0.17 -4.71 16 19 C 0.18 7.94 2.63 45.11 0.12 8.06 16 20 H 0.09 4.42 5.95 -2.39 -0.01 4.41 16 21 C 0.10 4.10 4.13 86.50 0.36 4.45 16 22 N -0.59 -28.55 2.54 -645.68 -1.64 -30.18 16 23 C -0.26 -13.84 9.73 84.03 0.82 -13.02 16 24 H 0.06 3.15 7.89 -2.91 -0.02 3.13 16 25 C -0.03 -1.82 4.99 84.86 0.42 -1.39 16 26 N -0.92 -49.08 10.72 21.65 0.23 -48.84 16 27 Si 0.96 43.32 29.59 68.60 2.03 45.35 16 28 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 29 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 30 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 31 H 0.07 1.00 7.66 -2.39 -0.02 0.98 16 32 H 0.07 0.99 7.66 -2.39 -0.02 0.98 16 33 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.16 2.20 6.30 -2.91 -0.02 2.18 16 35 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 38 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 39 H 0.14 4.33 5.45 -2.91 -0.02 4.32 16 40 H 0.08 3.32 6.98 -2.38 -0.02 3.30 16 41 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 43 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.08 3.48 2.50 -3.41 -0.01 3.47 16 45 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 47 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 48 H 0.10 3.76 4.00 -2.39 -0.01 3.75 16 49 H 0.06 2.83 7.64 -2.39 -0.02 2.81 16 50 H 0.25 13.15 8.31 -92.71 -0.77 12.38 16 Total: -1.00 -66.87 373.58 5.43 -61.44 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.95 Total: 26.79 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.63 Total: 7.36 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -2.76 Total: -104.38 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.43 Total: -36.56 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -66.87 5.43 -61.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039738345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.009 kcal (2) G-P(sol) polarization free energy of solvation -66.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds