Wall clock time and date at job start Wed Apr 1 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38288 * 119.97035 * 2 1 4 4 C 1.38246 * 120.10685 * 180.02562 * 3 2 1 5 5 C 1.38162 * 120.06064 * 359.68042 * 4 3 2 6 6 C 1.38715 * 119.94149 * 0.57096 * 5 4 3 7 7 O 1.35899 * 120.05836 * 179.72263 * 6 5 4 8 8 C 1.42902 * 116.99745 * 359.73030 * 7 6 5 9 9 C 1.50699 * 109.46935 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99940 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99942 * 179.97438 * 9 8 7 12 12 C 1.48249 * 127.00770 * 0.02562 * 11 9 8 13 13 C 1.55252 * 103.45174 * 141.53649 * 12 11 9 14 14 C 1.53229 * 102.46119 * 36.19268 * 13 12 11 15 15 C 1.53717 * 111.53558 * 216.62242 * 14 13 12 16 16 C 1.54581 * 102.78508 * 273.80444 * 15 14 13 17 17 N 1.47136 * 107.33048 * 339.10821 * 16 15 14 18 18 C 1.36936 * 125.61133 * 179.08469 * 17 16 15 19 19 H 1.07995 * 120.00110 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99654 * 359.97438 * 18 17 16 21 21 N 1.31618 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99744 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47160 * 89.99541 * 22 20 18 24 24 H 1.48500 * 109.47018 * 209.99771 * 22 20 18 25 25 H 1.48499 * 109.46914 * 329.99396 * 22 20 18 26 26 C 1.47708 * 108.78310 * 359.06355 * 17 16 15 27 27 C 1.47890 * 127.00316 * 179.97438 * 11 9 8 28 28 C 1.38122 * 119.97030 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47192 * 270.02501 * 1 2 3 30 30 H 1.09002 * 109.46878 * 30.03040 * 1 2 3 31 31 H 1.08998 * 109.47061 * 150.02124 * 1 2 3 32 32 H 1.07997 * 119.94459 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.96969 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.03397 * 180.30056 * 5 4 3 35 35 H 1.09000 * 109.47257 * 59.99563 * 8 7 6 36 36 H 1.08994 * 109.46980 * 299.99552 * 8 7 6 37 37 H 1.09000 * 110.62764 * 260.03210 * 12 11 9 38 38 H 1.09009 * 110.62209 * 22.88765 * 12 11 9 39 39 H 1.09002 * 110.80935 * 277.95013 * 13 12 11 40 40 H 1.08998 * 110.80875 * 154.43567 * 13 12 11 41 41 H 1.08998 * 110.74419 * 32.12738 * 15 14 13 42 42 H 1.08998 * 110.74734 * 155.29588 * 15 14 13 43 43 H 1.09001 * 109.87088 * 98.53704 * 16 15 14 44 44 H 1.08994 * 109.87400 * 219.66745 * 16 15 14 45 45 H 0.96992 * 119.99792 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.38935 * 263.80561 * 26 17 16 47 47 H 1.08996 * 110.38931 * 141.42122 * 26 17 16 48 48 H 1.09002 * 110.04455 * 85.90193 * 27 11 9 49 49 H 1.08996 * 110.09342 * 324.45235 * 27 11 9 50 50 H 1.08002 * 120.02924 * 0.02898 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1959 0.0003 7 8 4.2658 -2.3718 0.0006 8 6 5.6927 -2.2949 0.0006 9 6 6.2708 -3.6866 0.0016 10 8 5.5333 -4.6495 0.0028 11 7 7.6071 -3.8613 0.0012 12 6 8.6454 -2.8031 0.0003 13 6 9.7426 -3.3728 0.9394 14 6 9.7029 -4.8715 0.6230 15 6 9.9425 -5.7205 1.8819 16 6 11.4844 -5.8083 1.9470 17 7 11.9970 -5.5232 0.5976 18 6 13.3177 -5.4849 0.2379 19 1 13.5932 -5.2660 -0.7831 20 6 14.3024 -5.7274 1.1858 21 7 13.9667 -5.9937 2.4303 22 14 16.1041 -5.6745 0.6954 23 1 16.6244 -4.2947 0.8703 24 1 16.8781 -6.6078 1.5528 25 1 16.2421 -6.0791 -0.7267 26 6 10.8526 -5.2855 -0.3055 27 6 8.3367 -5.1477 0.0026 28 6 2.1970 -1.1965 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6565 2.1324 -0.0004 33 1 4.1176 2.1382 -0.0010 34 1 5.3552 0.0102 0.0101 35 1 6.0279 -1.7620 0.8903 36 1 6.0278 -1.7626 -0.8896 37 1 9.0400 -2.6531 -1.0046 38 1 8.2435 -1.8706 0.3968 39 1 9.4908 -3.1908 1.9842 40 1 10.7178 -2.9513 0.6958 41 1 9.5465 -5.2205 2.7658 42 1 9.5009 -6.7107 1.7697 43 1 11.8681 -5.0712 2.6524 44 1 11.7859 -6.8097 2.2540 45 1 14.6547 -6.1628 3.0926 46 1 10.5967 -6.1988 -0.8428 47 1 11.0823 -4.4831 -1.0065 48 1 8.4568 -5.5102 -1.0184 49 1 7.7972 -5.8835 0.5989 50 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041828362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:47 Heat of formation + Delta-G solvation = -12.915366 kcal Electronic energy + Delta-G solvation = -29501.153328 eV Core-core repulsion = 25494.483886 eV Total energy + Delta-G solvation = -4006.669443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.75563 -40.07548 -38.63871 -37.57429 -35.73444 -32.85764 -32.79049 -31.10293 -30.37851 -29.49188 -28.94268 -27.91470 -27.20417 -25.40942 -23.86075 -22.88649 -22.74537 -21.59136 -20.27464 -19.48452 -18.82181 -18.33331 -17.05743 -16.75501 -16.57695 -16.51868 -16.09366 -15.57452 -15.10267 -14.72993 -14.57556 -14.28016 -14.07854 -13.92205 -13.83586 -13.58162 -13.35069 -13.00359 -12.68447 -12.61135 -12.47692 -12.37323 -12.27125 -12.02717 -11.89410 -11.61250 -11.30319 -11.29068 -11.21820 -11.18067 -10.91281 -10.79368 -10.22351 -10.04030 -10.02199 -9.90478 -9.77850 -9.66930 -9.13049 -8.73485 -8.62441 -8.51288 -6.86348 -5.74038 -3.07718 0.97264 1.12313 2.26048 2.44796 3.31539 3.37379 3.41540 3.42907 3.44792 4.17800 4.43752 4.46199 4.51020 4.60312 4.68595 4.72133 4.76726 4.85252 4.91062 4.94318 4.99030 5.14996 5.23744 5.24454 5.35756 5.37991 5.41693 5.50650 5.54394 5.73948 5.74361 5.80260 5.88549 5.95524 5.95803 5.99468 6.08698 6.21831 6.24681 6.29905 6.32687 6.42378 6.47697 6.58697 6.66409 6.79264 7.05713 7.41407 7.53284 7.60464 7.80237 8.01189 8.22415 9.18991 9.79109 10.45078 11.37417 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.001813 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.930861 B =15440.476767 C =15913.132204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.048 4.048 3 C -0.161 4.161 4 C -0.075 4.075 5 C -0.217 4.217 6 C 0.135 3.865 7 O -0.290 6.290 8 C 0.047 3.953 9 C 0.533 3.467 10 O -0.522 6.522 11 N -0.617 5.617 12 C 0.094 3.906 13 C -0.110 4.110 14 C -0.086 4.086 15 C -0.132 4.132 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.228 4.228 19 H 0.077 0.923 20 C -0.008 4.008 21 N -0.921 5.921 22 Si 0.911 3.089 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.151 3.849 27 C 0.126 3.874 28 C -0.151 4.151 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.042 0.958 45 H 0.252 0.748 46 H 0.021 0.979 47 H 0.041 0.959 48 H 0.071 0.929 49 H 0.079 0.921 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.992 14.934 -4.289 26.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.048 4.048 3 C -0.179 4.179 4 C -0.093 4.093 5 C -0.236 4.236 6 C 0.090 3.910 7 O -0.202 6.202 8 C -0.031 4.031 9 C 0.320 3.680 10 O -0.398 6.398 11 N -0.353 5.353 12 C -0.029 4.029 13 C -0.148 4.148 14 C -0.088 4.088 15 C -0.171 4.171 16 C 0.055 3.945 17 N -0.330 5.330 18 C -0.357 4.357 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.569 5.569 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.024 3.976 27 C 0.004 3.996 28 C -0.169 4.169 29 H 0.092 0.908 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.141 0.859 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.097 0.903 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -22.361 14.172 -4.188 26.803 hybrid contribution 1.385 0.220 -0.163 1.412 sum -20.976 14.392 -4.351 25.808 Atomic orbital electron populations 1.20821 0.90665 1.03057 1.02660 1.19720 0.96118 0.92191 0.96783 1.20953 0.94186 0.97549 1.05242 1.20931 0.94179 0.97391 0.96824 1.21269 1.00329 0.92257 1.09724 1.19050 0.91872 0.84407 0.95711 1.86152 1.17937 1.27711 1.88382 1.22439 0.80420 0.96482 1.03790 1.19496 0.80901 0.90171 0.77441 1.90754 1.58045 1.41982 1.49004 1.48862 1.03870 1.09783 1.72773 1.22817 0.88573 0.90532 1.00942 1.22509 0.98771 0.94483 0.99001 1.21620 0.93516 0.95682 0.97974 1.22843 1.00581 0.98265 0.95369 1.21192 0.85687 1.00367 0.87232 1.44539 1.00651 1.83001 1.04844 1.19040 0.80452 1.41408 0.94776 0.90467 1.24796 0.98006 1.01916 0.95694 1.69961 1.31374 1.54116 1.01419 0.86133 0.84889 0.77363 0.77453 1.21651 1.21699 1.20724 1.21386 0.86832 0.97167 0.92196 1.21980 0.91185 0.85154 1.01328 1.20319 0.90786 0.98842 1.06985 0.90797 0.91263 0.91216 0.85931 0.85654 0.85424 0.88946 0.88982 0.90364 0.90641 0.90884 0.88848 0.92047 0.92226 0.93541 0.93987 0.93759 0.96168 0.94128 0.91120 0.90280 0.85026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.65 10.01 36.01 0.36 -0.29 16 2 C -0.05 -0.40 5.88 -104.64 -0.62 -1.01 16 3 C -0.16 -1.24 9.70 -39.56 -0.38 -1.62 16 4 C -0.08 -0.58 10.04 -39.61 -0.40 -0.98 16 5 C -0.22 -1.94 9.04 -39.43 -0.36 -2.29 16 6 C 0.14 1.49 6.69 -39.21 -0.26 1.22 16 7 O -0.29 -3.74 9.67 -39.34 -0.38 -4.12 16 8 C 0.05 0.50 4.16 36.00 0.15 0.65 16 9 C 0.53 7.51 7.97 -10.99 -0.09 7.42 16 10 O -0.52 -9.61 16.85 -14.36 -0.24 -9.85 16 11 N -0.62 -8.03 3.31 -170.00 -0.56 -8.60 16 12 C 0.09 0.99 6.96 -1.89 -0.01 0.98 16 13 C -0.11 -1.50 6.12 -25.42 -0.16 -1.65 16 14 C -0.09 -1.37 0.75 -153.99 -0.12 -1.48 16 15 C -0.13 -2.36 5.82 -25.53 -0.15 -2.51 16 16 C 0.18 4.18 5.32 -2.86 -0.02 4.17 16 17 N -0.60 -14.60 3.41 -170.49 -0.58 -15.18 16 18 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -26.45 10.31 55.49 0.57 -25.88 16 22 Si 0.91 21.62 29.55 -169.99 -5.02 16.60 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.15 2.87 5.93 -3.14 -0.02 2.85 16 27 C 0.13 1.82 6.31 -3.50 -0.02 1.80 16 28 C -0.15 -1.53 9.64 -39.43 -0.38 -1.91 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.07 0.36 8.08 -51.93 -0.42 -0.06 16 32 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 34 H 0.13 0.89 6.30 -52.48 -0.33 0.56 16 35 H 0.09 0.77 7.41 -51.93 -0.38 0.38 16 36 H 0.09 0.74 7.67 -51.93 -0.40 0.34 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.58 7.25 -51.92 -0.38 0.20 16 39 H 0.07 0.98 7.62 -51.93 -0.40 0.59 16 40 H 0.09 1.41 7.82 -51.93 -0.41 1.01 16 41 H 0.06 1.02 7.67 -51.93 -0.40 0.62 16 42 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 43 H 0.05 1.19 7.39 -51.93 -0.38 0.81 16 44 H 0.04 1.10 7.50 -51.93 -0.39 0.71 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 47 H 0.04 0.74 7.97 -51.93 -0.41 0.33 16 48 H 0.07 1.00 7.64 -51.93 -0.40 0.61 16 49 H 0.08 1.23 7.52 -51.93 -0.39 0.83 16 50 H 0.13 1.27 8.06 -52.49 -0.42 0.84 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -33.16 398.81 -10.90 -44.06 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -7.98 Total: -1.78 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -2.71 Total: -1.26 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.57 Total: -49.66 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.62 Total: -13.97 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.16 -10.90 -44.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041828362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.143 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds