Wall clock time and date at job start Wed Apr 1 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38288 * 119.97035 * 2 1 4 4 C 1.38246 * 120.10685 * 180.02562 * 3 2 1 5 5 C 1.38162 * 120.06064 * 359.68042 * 4 3 2 6 6 C 1.38715 * 119.94149 * 0.57096 * 5 4 3 7 7 O 1.35899 * 120.05836 * 179.72263 * 6 5 4 8 8 C 1.42902 * 116.99745 * 359.73030 * 7 6 5 9 9 C 1.50699 * 109.46935 * 179.97438 * 8 7 6 10 10 O 1.21284 * 119.99940 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99942 * 179.97438 * 9 8 7 12 12 C 1.48249 * 127.00770 * 0.02562 * 11 9 8 13 13 C 1.55252 * 103.45174 * 141.53649 * 12 11 9 14 14 C 1.53229 * 102.46119 * 36.19268 * 13 12 11 15 15 C 1.53717 * 111.53558 * 216.62242 * 14 13 12 16 16 C 1.54581 * 102.78508 * 273.80444 * 15 14 13 17 17 N 1.47136 * 107.33048 * 339.10821 * 16 15 14 18 18 C 1.36936 * 125.61133 * 179.08469 * 17 16 15 19 19 H 1.07995 * 120.00110 * 179.97438 * 18 17 16 20 20 C 1.38816 * 119.99654 * 359.97438 * 18 17 16 21 21 N 1.31618 * 120.00106 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99744 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47160 * 89.99541 * 22 20 18 24 24 H 1.48500 * 109.47018 * 209.99771 * 22 20 18 25 25 H 1.48499 * 109.46914 * 329.99396 * 22 20 18 26 26 C 1.47708 * 108.78310 * 359.06355 * 17 16 15 27 27 C 1.47890 * 127.00316 * 179.97438 * 11 9 8 28 28 C 1.38122 * 119.97030 * 179.97438 * 2 1 3 29 29 H 1.09000 * 109.47192 * 270.02501 * 1 2 3 30 30 H 1.09002 * 109.46878 * 30.03040 * 1 2 3 31 31 H 1.08998 * 109.47061 * 150.02124 * 1 2 3 32 32 H 1.07997 * 119.94459 * 359.97438 * 3 2 1 33 33 H 1.08006 * 119.96969 * 179.97438 * 4 3 2 34 34 H 1.08003 * 120.03397 * 180.30056 * 5 4 3 35 35 H 1.09000 * 109.47257 * 59.99563 * 8 7 6 36 36 H 1.08994 * 109.46980 * 299.99552 * 8 7 6 37 37 H 1.09000 * 110.62764 * 260.03210 * 12 11 9 38 38 H 1.09009 * 110.62209 * 22.88765 * 12 11 9 39 39 H 1.09002 * 110.80935 * 277.95013 * 13 12 11 40 40 H 1.08998 * 110.80875 * 154.43567 * 13 12 11 41 41 H 1.08998 * 110.74419 * 32.12738 * 15 14 13 42 42 H 1.08998 * 110.74734 * 155.29588 * 15 14 13 43 43 H 1.09001 * 109.87088 * 98.53704 * 16 15 14 44 44 H 1.08994 * 109.87400 * 219.66745 * 16 15 14 45 45 H 0.96992 * 119.99792 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.38935 * 263.80561 * 26 17 16 47 47 H 1.08996 * 110.38931 * 141.42122 * 26 17 16 48 48 H 1.09002 * 110.04455 * 85.90193 * 27 11 9 49 49 H 1.08996 * 110.09342 * 324.45235 * 27 11 9 50 50 H 1.08002 * 120.02924 * 0.02898 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1980 0.0000 4 6 3.5803 1.2013 -0.0005 5 6 4.2752 0.0071 0.0056 6 6 3.5846 -1.1959 0.0003 7 8 4.2658 -2.3718 0.0006 8 6 5.6927 -2.2949 0.0006 9 6 6.2708 -3.6866 0.0016 10 8 5.5333 -4.6495 0.0028 11 7 7.6071 -3.8613 0.0012 12 6 8.6454 -2.8031 0.0003 13 6 9.7426 -3.3728 0.9394 14 6 9.7029 -4.8715 0.6230 15 6 9.9425 -5.7205 1.8819 16 6 11.4844 -5.8083 1.9470 17 7 11.9970 -5.5232 0.5976 18 6 13.3177 -5.4849 0.2379 19 1 13.5932 -5.2660 -0.7831 20 6 14.3024 -5.7274 1.1858 21 7 13.9667 -5.9937 2.4303 22 14 16.1041 -5.6745 0.6954 23 1 16.6244 -4.2947 0.8703 24 1 16.8781 -6.6078 1.5528 25 1 16.2421 -6.0791 -0.7267 26 6 10.8526 -5.2855 -0.3055 27 6 8.3367 -5.1477 0.0026 28 6 2.1970 -1.1965 0.0005 29 1 -0.3633 0.0004 1.0277 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6565 2.1324 -0.0004 33 1 4.1176 2.1382 -0.0010 34 1 5.3552 0.0102 0.0101 35 1 6.0279 -1.7620 0.8903 36 1 6.0278 -1.7626 -0.8896 37 1 9.0400 -2.6531 -1.0046 38 1 8.2435 -1.8706 0.3968 39 1 9.4908 -3.1908 1.9842 40 1 10.7178 -2.9513 0.6958 41 1 9.5465 -5.2205 2.7658 42 1 9.5009 -6.7107 1.7697 43 1 11.8681 -5.0712 2.6524 44 1 11.7859 -6.8097 2.2540 45 1 14.6547 -6.1628 3.0926 46 1 10.5967 -6.1988 -0.8428 47 1 11.0823 -4.4831 -1.0065 48 1 8.4568 -5.5102 -1.0184 49 1 7.7972 -5.8835 0.5989 50 1 1.6570 -2.1318 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041828362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:45 Heat of formation + Delta-G solvation = -31.098171 kcal Electronic energy + Delta-G solvation = -29501.941794 eV Core-core repulsion = 25494.483886 eV Total energy + Delta-G solvation = -4007.457908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.69608 -41.03595 -39.78424 -38.41766 -37.18455 -34.52975 -33.39886 -32.29212 -31.48498 -30.82944 -30.18236 -29.04941 -27.79488 -27.08784 -25.22195 -24.01812 -23.48986 -22.27774 -22.10953 -20.48034 -20.12623 -19.11048 -18.77242 -17.71020 -17.63072 -17.33946 -16.82246 -16.74167 -16.50846 -16.00009 -15.74465 -15.60433 -15.19127 -15.12208 -14.62574 -14.36045 -14.21982 -14.12358 -13.95337 -13.84967 -13.72794 -13.35046 -13.13434 -13.03420 -12.94591 -12.91197 -12.76856 -12.54107 -12.43049 -12.37073 -12.02207 -11.95089 -11.82537 -11.79486 -11.54816 -11.38513 -11.29317 -10.99521 -10.67469 -9.82450 -9.73135 -9.17113 -8.86603 -7.82265 -5.17227 0.37418 0.48476 1.36254 1.41672 1.47851 1.49236 1.57731 2.47004 2.51765 2.80594 3.25331 3.36549 3.53636 3.61825 3.67563 3.84407 3.90010 3.95470 4.00081 4.04753 4.21865 4.24836 4.26610 4.36590 4.38599 4.45162 4.55541 4.58829 4.63223 4.71646 4.78670 4.84023 4.86789 4.86920 4.90582 5.01104 5.01929 5.06225 5.19695 5.25224 5.32194 5.36047 5.40852 5.49152 5.50637 5.66749 5.68325 5.79833 5.84805 6.21550 6.33788 6.44092 6.96918 7.12760 7.80239 8.45004 9.28066 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029878 B = 0.001813 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.930861 B =15440.476767 C =15913.132204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.054 4.054 3 C -0.164 4.164 4 C -0.078 4.078 5 C -0.221 4.221 6 C 0.111 3.889 7 O -0.322 6.322 8 C 0.051 3.949 9 C 0.530 3.470 10 O -0.576 6.576 11 N -0.613 5.613 12 C 0.101 3.899 13 C -0.109 4.109 14 C -0.073 4.073 15 C -0.121 4.121 16 C 0.191 3.809 17 N -0.623 5.623 18 C -0.236 4.236 19 H 0.085 0.915 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.976 3.024 23 H -0.284 1.284 24 H -0.299 1.299 25 H -0.270 1.270 26 C 0.148 3.852 27 C 0.130 3.870 28 C -0.176 4.176 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.153 0.847 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.096 0.904 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.015 0.985 44 H -0.001 1.001 45 H 0.245 0.755 46 H 0.020 0.980 47 H 0.055 0.945 48 H 0.076 0.924 49 H 0.067 0.933 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.875 18.216 -5.572 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.055 4.055 3 C -0.182 4.182 4 C -0.096 4.096 5 C -0.239 4.239 6 C 0.066 3.934 7 O -0.236 6.236 8 C -0.026 4.026 9 C 0.319 3.681 10 O -0.456 6.456 11 N -0.348 5.348 12 C -0.020 4.020 13 C -0.147 4.147 14 C -0.075 4.075 15 C -0.159 4.159 16 C 0.066 3.934 17 N -0.349 5.349 18 C -0.366 4.366 19 H 0.103 0.897 20 C -0.260 4.260 21 N -0.602 5.602 22 Si 0.805 3.195 23 H -0.211 1.211 24 H -0.226 1.226 25 H -0.195 1.195 26 C 0.023 3.977 27 C 0.007 3.993 28 C -0.195 4.195 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.168 0.832 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.114 0.886 38 H 0.134 0.866 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.018 0.982 45 H 0.054 0.946 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -23.252 17.491 -5.506 29.613 hybrid contribution 1.624 -0.803 0.215 1.824 sum -21.628 16.689 -5.292 27.826 Atomic orbital electron populations 1.20874 0.89108 1.03830 1.03335 1.20032 0.97412 0.91876 0.96133 1.21326 0.94635 0.98130 1.04154 1.21323 0.94429 0.98130 0.95670 1.21538 1.01508 0.91684 1.09173 1.19284 0.92134 0.84617 0.97334 1.86096 1.19136 1.29257 1.89078 1.22548 0.79612 0.94007 1.06457 1.20200 0.80626 0.91220 0.76080 1.90731 1.59303 1.44012 1.51511 1.48870 1.04117 1.09734 1.72035 1.22971 0.86729 0.90959 1.01308 1.22470 0.99472 0.92598 1.00204 1.21452 0.93136 0.97082 0.95829 1.22705 0.96356 0.99443 0.97416 1.20886 0.89147 0.96842 0.86545 1.44808 1.01236 1.82843 1.06023 1.19456 0.81938 1.40099 0.95061 0.89729 1.25617 1.02057 1.02525 0.95815 1.70188 1.32021 1.55625 1.02328 0.85111 0.79953 0.77100 0.77372 1.21127 1.22582 1.19458 1.21555 0.86293 0.97552 0.92308 1.21757 0.90207 0.86094 1.01205 1.20498 0.91150 0.99378 1.08434 0.90087 0.89665 0.91295 0.83623 0.82976 0.83244 0.86184 0.85918 0.88624 0.86570 0.90506 0.90169 0.90433 0.91830 0.96664 0.98245 0.94578 0.96262 0.92682 0.90589 0.91468 0.86036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 10.01 71.24 0.71 -0.42 16 2 C -0.05 -0.83 5.88 -19.88 -0.12 -0.95 16 3 C -0.16 -2.08 9.70 22.28 0.22 -1.86 16 4 C -0.08 -0.95 10.04 22.25 0.22 -0.73 16 5 C -0.22 -3.29 9.04 22.37 0.20 -3.08 16 6 C 0.11 2.32 6.69 22.51 0.15 2.47 16 7 O -0.32 -8.04 9.67 -73.38 -0.71 -8.75 16 8 C 0.05 0.93 4.16 71.24 0.30 1.22 16 9 C 0.53 13.97 7.97 87.66 0.70 14.67 16 10 O -0.58 -21.22 16.85 15.99 0.27 -20.96 16 11 N -0.61 -14.36 3.31 -810.13 -2.68 -17.04 16 12 C 0.10 1.72 6.96 86.82 0.60 2.32 16 13 C -0.11 -2.72 6.12 31.44 0.19 -2.53 16 14 C -0.07 -2.24 0.75 -51.85 -0.04 -2.28 16 15 C -0.12 -4.33 5.82 31.37 0.18 -4.15 16 16 C 0.19 9.21 5.32 86.80 0.46 9.68 16 17 N -0.62 -30.53 3.41 -693.30 -2.36 -32.89 16 18 C -0.24 -12.80 10.28 84.03 0.86 -11.93 16 19 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 20 C -0.07 -3.76 5.49 84.86 0.47 -3.30 16 21 N -0.95 -56.72 10.31 21.65 0.22 -56.50 16 22 Si 0.98 44.98 29.55 68.60 2.03 47.01 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 C 0.15 5.53 5.93 86.30 0.51 6.04 16 27 C 0.13 3.60 6.31 85.97 0.54 4.14 16 28 C -0.18 -3.54 9.64 22.37 0.22 -3.33 16 29 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.08 0.55 8.09 -2.39 -0.02 0.54 16 31 H 0.07 0.68 8.08 -2.39 -0.02 0.66 16 32 H 0.15 1.10 8.06 -2.91 -0.02 1.07 16 33 H 0.15 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.15 1.42 6.30 -2.91 -0.02 1.40 16 35 H 0.12 1.48 7.41 -2.39 -0.02 1.46 16 36 H 0.12 1.44 7.67 -2.39 -0.02 1.42 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.12 1.11 7.25 -2.38 -0.02 1.09 16 39 H 0.08 1.88 7.62 -2.39 -0.02 1.86 16 40 H 0.08 2.27 7.82 -2.39 -0.02 2.25 16 41 H 0.08 2.53 7.67 -2.39 -0.02 2.51 16 42 H 0.06 2.22 7.87 -2.39 -0.02 2.20 16 43 H 0.02 0.82 7.39 -2.39 -0.02 0.80 16 44 H 0.00 -0.04 7.50 -2.39 -0.02 -0.06 16 45 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 46 H 0.02 0.74 7.92 -2.38 -0.02 0.72 16 47 H 0.05 1.90 7.97 -2.39 -0.02 1.89 16 48 H 0.08 2.04 7.64 -2.39 -0.02 2.02 16 49 H 0.07 2.05 7.52 -2.39 -0.02 2.03 16 50 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -76.54 398.81 4.07 -72.47 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.92 Total: 10.67 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 6.38 Total: 5.99 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -4.82 Total: -106.43 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.44 Total: -29.70 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -76.54 4.07 -72.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041828362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.368 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds