Wall clock time and date at job start Wed Apr 1 2020 04:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.97664 * 2 1 4 4 C 1.38244 * 120.11137 * 180.02562 * 3 2 1 5 5 C 1.38163 * 120.05785 * 0.02840 * 4 3 2 6 6 C 1.38716 * 119.94453 * 0.22100 * 5 4 3 7 7 O 1.35894 * 120.05525 * 179.72380 * 6 5 4 8 8 C 1.42900 * 117.00320 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47523 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99873 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00237 * 180.02562 * 9 8 7 12 12 C 1.47375 * 125.73847 * 179.97438 * 11 9 8 13 13 C 1.55420 * 106.73764 * 179.05984 * 12 11 9 14 14 H 1.08993 * 112.76325 * 146.41250 * 13 12 11 15 15 C 1.52909 * 106.56720 * 270.28600 * 13 12 11 16 16 C 1.51875 * 111.49980 * 169.08786 * 15 13 12 17 17 N 1.44352 * 113.47533 * 321.32587 * 16 15 13 18 18 C 1.36939 * 116.42182 * 187.47832 * 17 16 15 19 19 H 1.08007 * 119.99725 * 152.70340 * 18 17 16 20 20 C 1.38805 * 120.00463 * 332.70587 * 18 17 16 21 21 N 1.31628 * 119.99717 * 335.94440 * 20 18 17 22 22 Si 1.86792 * 120.00402 * 155.94205 * 20 18 17 23 23 H 1.48498 * 109.47373 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47503 * 120.00247 * 22 20 18 25 25 H 1.48499 * 109.47333 * 240.00143 * 22 20 18 26 26 C 1.43978 * 127.15112 * 7.50031 * 17 16 15 27 27 C 1.49781 * 116.29951 * 2.85096 * 26 17 16 28 28 H 1.08999 * 109.25316 * 141.40481 * 27 26 17 29 29 C 1.47930 * 125.74016 * 359.68608 * 11 9 8 30 30 C 1.38129 * 119.97073 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47442 * 89.99566 * 1 2 3 32 32 H 1.09002 * 109.47492 * 210.00109 * 1 2 3 33 33 H 1.09004 * 109.46873 * 329.99548 * 1 2 3 34 34 H 1.07993 * 119.94082 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.97074 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.02712 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47100 * 299.99597 * 8 7 6 38 38 H 1.09001 * 109.47557 * 59.99459 * 8 7 6 39 39 H 1.09001 * 110.00645 * 298.37526 * 12 11 9 40 40 H 1.09002 * 110.00686 * 59.74047 * 12 11 9 41 41 H 1.09005 * 109.03982 * 290.44243 * 15 13 12 42 42 H 1.09002 * 109.04377 * 49.31167 * 15 13 12 43 43 H 1.09000 * 108.95949 * 199.98397 * 16 15 13 44 44 H 1.08998 * 108.02242 * 82.00518 * 16 15 13 45 45 H 0.96999 * 119.99467 * 179.97438 * 21 20 18 46 46 H 1.08997 * 108.11478 * 241.07609 * 26 17 16 47 47 H 1.08999 * 108.11520 * 124.62376 * 26 17 16 48 48 H 1.09005 * 110.56702 * 274.15229 * 29 11 9 49 49 H 1.09009 * 110.56762 * 37.00429 * 29 11 9 50 50 H 1.08003 * 120.02591 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 -0.0017 6 6 3.5845 -1.1960 -0.0069 7 8 4.2656 -2.3719 -0.0137 8 6 5.6926 -2.2951 -0.0145 9 6 6.2706 -3.6869 -0.0217 10 8 5.5332 -4.6497 -0.0253 11 7 7.6070 -3.8616 -0.0231 12 6 8.3055 -5.1593 -0.0294 13 6 9.8280 -4.8480 -0.0531 14 1 10.4171 -5.5820 0.4965 15 6 10.2318 -4.7582 -1.5252 16 6 11.6343 -4.1978 -1.6844 17 7 11.9376 -3.1346 -0.7563 18 6 13.1241 -2.4784 -0.9480 19 1 13.2321 -1.4530 -0.6264 20 6 14.1880 -3.1309 -1.5555 21 7 14.2593 -4.4449 -1.5227 22 14 15.5183 -2.1446 -2.4195 23 1 15.2078 -0.6963 -2.3144 24 1 16.8306 -2.4167 -1.7800 25 1 15.5744 -2.5367 -3.8507 26 6 11.1299 -2.6885 0.3490 27 6 9.8648 -3.4512 0.5967 28 1 9.7102 -3.5517 1.6710 29 6 8.6194 -2.7830 -0.0247 30 6 2.1970 -1.1966 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6566 2.1324 0.0004 35 1 4.1177 2.1380 -0.0010 36 1 5.3552 0.0101 -0.0025 37 1 6.0270 -1.7579 -0.9020 38 1 6.0286 -1.7672 0.8779 39 1 8.0540 -5.7225 0.8694 40 1 8.0273 -5.7282 -0.9165 41 1 10.1795 -5.7522 -1.9695 42 1 9.5355 -4.1005 -2.0455 43 1 11.7517 -3.8206 -2.7004 44 1 12.3424 -5.0117 -1.5289 45 1 15.0026 -4.9009 -1.9475 46 1 10.8681 -1.6444 0.1778 47 1 11.7368 -2.7360 1.2531 48 1 8.8265 -2.4537 -1.0430 49 1 8.2880 -1.9457 0.5896 50 1 1.6569 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088198452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:16 Heat of formation + Delta-G solvation = -16.637847 kcal Electronic energy + Delta-G solvation = -29840.261346 eV Core-core repulsion = 25833.430484 eV Total energy + Delta-G solvation = -4006.830862 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -40.76698 -40.12635 -38.60422 -37.53444 -35.69017 -32.82327 -32.80015 -31.68243 -30.95054 -30.33488 -28.83849 -27.55040 -27.08232 -25.52709 -23.58357 -22.83208 -22.29382 -21.81600 -21.25783 -19.41109 -18.37137 -17.80939 -17.23271 -16.89609 -16.65004 -16.39066 -16.01294 -15.53296 -15.14186 -14.86422 -14.51901 -14.37457 -13.99620 -13.97702 -13.71431 -13.54796 -13.36540 -13.21220 -12.99301 -12.88370 -12.54611 -12.46591 -12.29561 -12.20485 -11.85718 -11.84445 -11.34345 -11.24130 -11.17277 -11.15160 -10.82049 -10.58244 -10.33400 -10.26330 -9.99264 -9.77418 -9.70936 -9.62499 -9.08916 -8.67357 -8.53314 -8.47111 -6.66955 -5.67316 -3.32930 1.01549 1.16502 2.30315 2.46786 3.33862 3.35488 3.42910 3.45057 3.45765 4.20738 4.44604 4.48338 4.55023 4.63582 4.67572 4.75611 4.81310 4.84786 4.93831 5.02598 5.04331 5.18995 5.25975 5.26353 5.32599 5.40626 5.44688 5.47259 5.56449 5.58721 5.77896 5.78343 5.83007 5.98328 6.00991 6.06019 6.08433 6.13538 6.28313 6.29726 6.45838 6.46794 6.51427 6.59554 6.71967 6.79104 7.09490 7.25119 7.40689 7.76977 7.88144 8.02851 8.48230 9.23885 9.93210 10.22697 11.18669 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.002110 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.426245 B =13267.096004 C =14400.647662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.049 4.049 3 C -0.161 4.161 4 C -0.075 4.075 5 C -0.216 4.216 6 C 0.135 3.865 7 O -0.290 6.290 8 C 0.047 3.953 9 C 0.530 3.470 10 O -0.525 6.525 11 N -0.613 5.613 12 C 0.111 3.889 13 C -0.080 4.080 14 H 0.100 0.900 15 C -0.123 4.123 16 C 0.155 3.845 17 N -0.585 5.585 18 C -0.269 4.269 19 H 0.066 0.934 20 C 0.006 3.994 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.176 3.824 27 C -0.097 4.097 28 H 0.076 0.924 29 C 0.101 3.899 30 C -0.151 4.151 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.068 0.932 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.046 0.954 43 H 0.020 0.980 44 H 0.080 0.920 45 H 0.253 0.747 46 H 0.014 0.986 47 H 0.025 0.975 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.633 7.910 3.882 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.049 4.049 3 C -0.179 4.179 4 C -0.093 4.093 5 C -0.235 4.235 6 C 0.089 3.911 7 O -0.202 6.202 8 C -0.032 4.032 9 C 0.317 3.683 10 O -0.401 6.401 11 N -0.349 5.349 12 C -0.010 4.010 13 C -0.100 4.100 14 H 0.119 0.881 15 C -0.161 4.161 16 C 0.030 3.970 17 N -0.310 5.310 18 C -0.399 4.399 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.532 5.532 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.218 1.218 25 H -0.215 1.215 26 C 0.049 3.951 27 C -0.116 4.116 28 H 0.094 0.906 29 C -0.022 4.022 30 C -0.170 4.170 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.038 0.962 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.032 0.968 47 H 0.043 0.957 48 H 0.098 0.902 49 H 0.093 0.907 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -22.163 7.054 3.829 23.572 hybrid contribution 1.091 0.711 -0.535 1.408 sum -21.073 7.765 3.294 22.698 Atomic orbital electron populations 1.20813 0.90689 1.03026 1.02629 1.19714 0.96092 0.92203 0.96888 1.20951 0.94185 0.97535 1.05249 1.20940 0.94171 0.97434 0.96739 1.21292 1.00418 0.92252 1.09540 1.19048 0.91863 0.84419 0.95748 1.86139 1.17963 1.27735 1.88402 1.22450 0.80352 0.96454 1.03934 1.19543 0.81052 0.90199 0.77497 1.90740 1.58197 1.41997 1.49143 1.48594 1.04095 1.09445 1.72772 1.22466 0.92177 0.84499 1.01896 1.22077 0.92557 0.97091 0.98228 0.88142 1.21734 0.99823 1.00537 0.93980 1.20270 0.92067 0.93241 0.91380 1.42663 1.19598 1.39908 1.28794 1.19145 0.89296 0.94283 1.37146 0.91613 1.24988 0.97138 0.95197 1.02067 1.70006 1.31038 1.06937 1.45227 0.86293 0.81494 0.79858 0.79539 1.20218 1.21794 1.21528 1.19248 0.89327 0.94953 0.91539 1.21636 0.94680 0.95596 0.99704 0.90579 1.22682 0.87811 0.89779 1.01893 1.20304 0.90766 0.98803 1.07086 0.90826 0.91250 0.91274 0.85938 0.85608 0.85346 0.88855 0.88927 0.91604 0.91116 0.92117 0.93528 0.96230 0.90271 0.93704 0.96817 0.95728 0.90175 0.90749 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.05 -0.43 5.88 -104.65 -0.62 -1.04 16 3 C -0.16 -1.33 9.70 -39.56 -0.38 -1.71 16 4 C -0.07 -0.64 10.04 -39.61 -0.40 -1.04 16 5 C -0.22 -2.11 9.04 -39.43 -0.36 -2.47 16 6 C 0.13 1.57 6.69 -39.22 -0.26 1.31 16 7 O -0.29 -3.92 9.67 -39.32 -0.38 -4.30 16 8 C 0.05 0.53 4.24 36.01 0.15 0.68 16 9 C 0.53 7.77 7.93 -10.98 -0.09 7.68 16 10 O -0.52 -9.76 16.83 -14.35 -0.24 -10.00 16 11 N -0.61 -8.41 3.34 -169.45 -0.57 -8.98 16 12 C 0.11 1.57 6.25 -2.28 -0.01 1.56 16 13 C -0.08 -1.24 3.60 -88.80 -0.32 -1.56 16 14 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 15 C -0.12 -2.13 4.83 -27.35 -0.13 -2.26 16 16 C 0.16 3.49 5.09 -5.76 -0.03 3.46 16 17 N -0.59 -13.65 3.23 -179.51 -0.58 -14.23 16 18 C -0.27 -7.06 9.27 -15.06 -0.14 -7.20 16 19 H 0.07 1.71 7.94 -52.48 -0.42 1.29 16 20 C 0.01 0.16 4.95 -17.43 -0.09 0.07 16 21 N -0.89 -24.75 10.89 55.49 0.60 -24.15 16 22 Si 0.90 21.05 29.62 -169.99 -5.03 16.02 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 C 0.18 3.33 5.75 -6.98 -0.04 3.29 16 27 C -0.10 -1.44 2.84 -90.91 -0.26 -1.70 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 C 0.10 1.27 5.48 -2.53 -0.01 1.26 16 30 C -0.15 -1.60 9.64 -39.43 -0.38 -1.98 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.38 8.08 -51.93 -0.42 -0.03 16 33 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 34 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 35 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 36 H 0.13 1.04 6.30 -52.48 -0.33 0.71 16 37 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 38 H 0.09 0.84 7.39 -51.93 -0.38 0.45 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 1.02 7.78 -51.93 -0.40 0.62 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.78 6.68 -51.93 -0.35 0.44 16 43 H 0.02 0.48 8.11 -51.93 -0.42 0.06 16 44 H 0.08 2.05 5.79 -51.93 -0.30 1.74 16 45 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 46 H 0.01 0.26 7.81 -51.93 -0.41 -0.15 16 47 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 48 H 0.08 1.09 7.22 -51.93 -0.37 0.71 16 49 H 0.07 0.74 7.51 -51.92 -0.39 0.35 16 50 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -31.83 393.80 -11.22 -43.05 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -7.95 Total: -1.36 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -3.00 Total: -1.98 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.54 Total: -47.36 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -0.62 Total: -14.30 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.83 -11.22 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.409 kcal (2) G-P(sol) polarization free energy of solvation -31.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds