Wall clock time and date at job start Wed Apr 1 2020 04:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38289 * 119.97664 * 2 1 4 4 C 1.38244 * 120.11137 * 180.02562 * 3 2 1 5 5 C 1.38163 * 120.05785 * 0.02840 * 4 3 2 6 6 C 1.38716 * 119.94453 * 0.22100 * 5 4 3 7 7 O 1.35894 * 120.05525 * 179.72380 * 6 5 4 8 8 C 1.42900 * 117.00320 * 0.02562 * 7 6 5 9 9 C 1.50702 * 109.47523 * 179.97438 * 8 7 6 10 10 O 1.21283 * 119.99873 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00237 * 180.02562 * 9 8 7 12 12 C 1.47375 * 125.73847 * 179.97438 * 11 9 8 13 13 C 1.55420 * 106.73764 * 179.05984 * 12 11 9 14 14 H 1.08993 * 112.76325 * 146.41250 * 13 12 11 15 15 C 1.52909 * 106.56720 * 270.28600 * 13 12 11 16 16 C 1.51875 * 111.49980 * 169.08786 * 15 13 12 17 17 N 1.44352 * 113.47533 * 321.32587 * 16 15 13 18 18 C 1.36939 * 116.42182 * 187.47832 * 17 16 15 19 19 H 1.08007 * 119.99725 * 152.70340 * 18 17 16 20 20 C 1.38805 * 120.00463 * 332.70587 * 18 17 16 21 21 N 1.31628 * 119.99717 * 335.94440 * 20 18 17 22 22 Si 1.86792 * 120.00402 * 155.94205 * 20 18 17 23 23 H 1.48498 * 109.47373 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47503 * 120.00247 * 22 20 18 25 25 H 1.48499 * 109.47333 * 240.00143 * 22 20 18 26 26 C 1.43978 * 127.15112 * 7.50031 * 17 16 15 27 27 C 1.49781 * 116.29951 * 2.85096 * 26 17 16 28 28 H 1.08999 * 109.25316 * 141.40481 * 27 26 17 29 29 C 1.47930 * 125.74016 * 359.68608 * 11 9 8 30 30 C 1.38129 * 119.97073 * 180.02562 * 2 1 3 31 31 H 1.08992 * 109.47442 * 89.99566 * 1 2 3 32 32 H 1.09002 * 109.47492 * 210.00109 * 1 2 3 33 33 H 1.09004 * 109.46873 * 329.99548 * 1 2 3 34 34 H 1.07993 * 119.94082 * 0.02562 * 3 2 1 35 35 H 1.08000 * 119.97074 * 179.97438 * 4 3 2 36 36 H 1.08003 * 120.02712 * 179.97438 * 5 4 3 37 37 H 1.09001 * 109.47100 * 299.99597 * 8 7 6 38 38 H 1.09001 * 109.47557 * 59.99459 * 8 7 6 39 39 H 1.09001 * 110.00645 * 298.37526 * 12 11 9 40 40 H 1.09002 * 110.00686 * 59.74047 * 12 11 9 41 41 H 1.09005 * 109.03982 * 290.44243 * 15 13 12 42 42 H 1.09002 * 109.04377 * 49.31167 * 15 13 12 43 43 H 1.09000 * 108.95949 * 199.98397 * 16 15 13 44 44 H 1.08998 * 108.02242 * 82.00518 * 16 15 13 45 45 H 0.96999 * 119.99467 * 179.97438 * 21 20 18 46 46 H 1.08997 * 108.11478 * 241.07609 * 26 17 16 47 47 H 1.08999 * 108.11520 * 124.62376 * 26 17 16 48 48 H 1.09005 * 110.56702 * 274.15229 * 29 11 9 49 49 H 1.09009 * 110.56762 * 37.00429 * 29 11 9 50 50 H 1.08003 * 120.02591 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1979 0.0000 4 6 3.5803 1.2012 -0.0005 5 6 4.2752 0.0070 -0.0017 6 6 3.5845 -1.1960 -0.0069 7 8 4.2656 -2.3719 -0.0137 8 6 5.6926 -2.2951 -0.0145 9 6 6.2706 -3.6869 -0.0217 10 8 5.5332 -4.6497 -0.0253 11 7 7.6070 -3.8616 -0.0231 12 6 8.3055 -5.1593 -0.0294 13 6 9.8280 -4.8480 -0.0531 14 1 10.4171 -5.5820 0.4965 15 6 10.2318 -4.7582 -1.5252 16 6 11.6343 -4.1978 -1.6844 17 7 11.9376 -3.1346 -0.7563 18 6 13.1241 -2.4784 -0.9480 19 1 13.2321 -1.4530 -0.6264 20 6 14.1880 -3.1309 -1.5555 21 7 14.2593 -4.4449 -1.5227 22 14 15.5183 -2.1446 -2.4195 23 1 15.2078 -0.6963 -2.3144 24 1 16.8306 -2.4167 -1.7800 25 1 15.5744 -2.5367 -3.8507 26 6 11.1299 -2.6885 0.3490 27 6 9.8648 -3.4512 0.5967 28 1 9.7102 -3.5517 1.6710 29 6 8.6194 -2.7830 -0.0247 30 6 2.1970 -1.1966 -0.0005 31 1 -0.3634 0.0001 -1.0276 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3633 0.8900 0.5139 34 1 1.6566 2.1324 0.0004 35 1 4.1177 2.1380 -0.0010 36 1 5.3552 0.0101 -0.0025 37 1 6.0270 -1.7579 -0.9020 38 1 6.0286 -1.7672 0.8779 39 1 8.0540 -5.7225 0.8694 40 1 8.0273 -5.7282 -0.9165 41 1 10.1795 -5.7522 -1.9695 42 1 9.5355 -4.1005 -2.0455 43 1 11.7517 -3.8206 -2.7004 44 1 12.3424 -5.0117 -1.5289 45 1 15.0026 -4.9009 -1.9475 46 1 10.8681 -1.6444 0.1778 47 1 11.7368 -2.7360 1.2531 48 1 8.8265 -2.4537 -1.0430 49 1 8.2880 -1.9457 0.5896 50 1 1.6569 -2.1319 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088198452.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:14 Heat of formation + Delta-G solvation = -33.340196 kcal Electronic energy + Delta-G solvation = -29840.985614 eV Core-core repulsion = 25833.430484 eV Total energy + Delta-G solvation = -4007.555130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.79504 -41.07405 -39.75705 -38.43081 -37.26978 -34.34322 -33.41177 -33.19597 -32.16067 -31.53651 -29.97164 -28.59595 -27.74807 -27.08114 -25.13417 -23.68825 -23.50217 -23.17280 -22.15548 -20.45059 -19.44392 -19.13356 -18.79192 -17.86501 -17.67633 -17.29491 -16.91803 -16.75238 -16.64265 -16.02357 -15.73036 -15.62631 -15.28303 -15.13517 -14.76515 -14.69049 -14.44603 -14.25658 -14.20381 -13.85411 -13.79574 -13.51638 -13.32423 -13.06390 -12.94540 -12.91570 -12.85419 -12.53546 -12.44348 -12.18438 -12.03095 -11.96704 -11.84496 -11.81073 -11.47287 -11.30036 -11.21245 -11.01674 -10.51165 -9.81205 -9.74435 -9.18803 -8.63248 -7.66167 -5.36765 0.35907 0.46977 1.34441 1.38423 1.46223 1.50069 1.59410 2.43504 2.53099 2.79099 3.20550 3.24546 3.44759 3.63742 3.76625 3.80391 3.84790 3.93750 3.98102 4.01397 4.12416 4.20576 4.32010 4.35368 4.43556 4.46435 4.53426 4.54407 4.62582 4.63713 4.74449 4.83923 4.87065 4.90799 4.95096 5.00509 5.04992 5.08136 5.19078 5.24512 5.29039 5.34207 5.34734 5.44660 5.49574 5.65316 5.72417 5.83071 5.97719 6.27861 6.39019 6.47232 6.93003 7.24689 8.08433 8.26467 9.14759 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018303 B = 0.002110 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1529.426245 B =13267.096004 C =14400.647662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.054 4.054 3 C -0.163 4.163 4 C -0.079 4.079 5 C -0.222 4.222 6 C 0.110 3.890 7 O -0.320 6.320 8 C 0.050 3.950 9 C 0.529 3.471 10 O -0.572 6.572 11 N -0.609 5.609 12 C 0.118 3.882 13 C -0.077 4.077 14 H 0.095 0.905 15 C -0.111 4.111 16 C 0.164 3.836 17 N -0.596 5.596 18 C -0.278 4.278 19 H 0.067 0.933 20 C -0.046 4.046 21 N -0.918 5.918 22 Si 0.957 3.043 23 H -0.266 1.266 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.173 3.827 27 C -0.094 4.094 28 H 0.097 0.903 29 C 0.108 3.892 30 C -0.174 4.174 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.055 0.945 43 H -0.010 1.010 44 H 0.045 0.955 45 H 0.248 0.752 46 H 0.029 0.971 47 H 0.011 0.989 48 H 0.075 0.925 49 H 0.113 0.887 50 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.112 10.565 4.529 25.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.054 4.054 3 C -0.181 4.181 4 C -0.096 4.096 5 C -0.241 4.241 6 C 0.065 3.935 7 O -0.233 6.233 8 C -0.028 4.028 9 C 0.317 3.683 10 O -0.452 6.452 11 N -0.344 5.344 12 C -0.004 4.004 13 C -0.096 4.096 14 H 0.113 0.887 15 C -0.149 4.149 16 C 0.038 3.962 17 N -0.321 5.321 18 C -0.409 4.409 19 H 0.084 0.916 20 C -0.243 4.243 21 N -0.563 5.563 22 Si 0.786 3.214 23 H -0.191 1.191 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.048 3.952 27 C -0.114 4.114 28 H 0.116 0.884 29 C -0.014 4.014 30 C -0.192 4.192 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.164 0.836 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.074 0.926 43 H 0.009 0.991 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.047 0.953 47 H 0.029 0.971 48 H 0.093 0.907 49 H 0.131 0.869 50 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.646 9.748 4.491 25.967 hybrid contribution 1.529 -0.067 -0.717 1.690 sum -22.117 9.681 3.774 24.436 Atomic orbital electron populations 1.20871 0.88956 1.03888 1.03368 1.20047 0.97484 0.91821 0.96070 1.21325 0.94503 0.98227 1.04084 1.21315 0.94532 0.98047 0.95742 1.21528 1.01392 0.91870 1.09267 1.19291 0.92211 0.84555 0.97400 1.86085 1.18956 1.29211 1.89085 1.22540 0.79727 0.94290 1.06230 1.20142 0.80763 0.91118 0.76246 1.90720 1.59232 1.43817 1.51407 1.48594 1.04161 1.09470 1.72144 1.22319 0.90921 0.85055 1.02132 1.21983 0.93438 0.97640 0.96583 0.88689 1.21576 0.96608 1.00787 0.95920 1.19997 0.94379 0.91946 0.89855 1.42895 1.19376 1.39644 1.30151 1.19473 0.90276 0.94571 1.36557 0.91557 1.25696 0.99398 0.96026 1.03171 1.70169 1.31644 1.08210 1.46284 0.85365 0.78964 0.79104 0.77962 1.19059 1.22038 1.22000 1.19354 0.90330 0.96182 0.89359 1.21550 0.93791 0.94820 1.01189 0.88444 1.22692 0.86311 0.90145 1.02230 1.20495 0.90976 0.99447 1.08322 0.90050 0.91183 0.89655 0.83549 0.83133 0.83628 0.86707 0.86074 0.90886 0.91548 0.91243 0.92648 0.99149 0.93783 0.94218 0.95309 0.97068 0.90650 0.86912 0.85821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.23 0.71 -0.46 16 2 C -0.05 -0.87 5.88 -19.88 -0.12 -0.99 16 3 C -0.16 -2.26 9.70 22.28 0.22 -2.05 16 4 C -0.08 -1.11 10.04 22.25 0.22 -0.88 16 5 C -0.22 -3.78 9.04 22.37 0.20 -3.58 16 6 C 0.11 2.45 6.69 22.51 0.15 2.61 16 7 O -0.32 -8.40 9.67 -73.32 -0.71 -9.11 16 8 C 0.05 1.01 4.24 71.24 0.30 1.31 16 9 C 0.53 14.56 7.93 87.66 0.70 15.26 16 10 O -0.57 -21.11 16.83 16.00 0.27 -20.84 16 11 N -0.61 -15.21 3.34 -808.42 -2.70 -17.91 16 12 C 0.12 3.13 6.25 87.04 0.54 3.67 16 13 C -0.08 -2.28 3.60 -9.62 -0.03 -2.31 16 14 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 15 C -0.11 -3.80 4.83 30.19 0.15 -3.65 16 16 C 0.16 7.51 5.09 86.41 0.44 7.95 16 17 N -0.60 -27.84 3.23 -721.86 -2.33 -30.17 16 18 C -0.28 -14.67 9.27 84.03 0.78 -13.89 16 19 H 0.07 3.42 7.94 -2.91 -0.02 3.40 16 20 C -0.05 -2.50 4.95 84.86 0.42 -2.08 16 21 N -0.92 -52.61 10.89 21.65 0.24 -52.38 16 22 Si 0.96 43.77 29.62 68.60 2.03 45.80 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 25 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 26 C 0.17 6.30 5.75 85.81 0.49 6.79 16 27 C -0.09 -2.58 2.84 -10.98 -0.03 -2.61 16 28 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 29 C 0.11 2.36 5.48 86.57 0.47 2.83 16 30 C -0.17 -3.64 9.64 22.37 0.22 -3.43 16 31 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.70 8.08 -2.39 -0.02 0.69 16 33 H 0.08 0.60 8.09 -2.39 -0.02 0.58 16 34 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 35 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 36 H 0.15 1.83 6.30 -2.91 -0.02 1.81 16 37 H 0.12 1.81 7.66 -2.39 -0.02 1.79 16 38 H 0.12 1.73 7.39 -2.39 -0.02 1.71 16 39 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 1.84 7.78 -2.39 -0.02 1.82 16 41 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.05 1.80 6.68 -2.39 -0.02 1.78 16 43 H -0.01 -0.49 8.11 -2.39 -0.02 -0.51 16 44 H 0.04 2.38 5.79 -2.39 -0.01 2.37 16 45 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16 46 H 0.03 0.98 7.81 -2.39 -0.02 0.96 16 47 H 0.01 0.44 8.13 -2.39 -0.02 0.42 16 48 H 0.08 1.79 7.22 -2.38 -0.02 1.77 16 49 H 0.11 1.67 7.51 -2.38 -0.02 1.65 16 50 H 0.12 2.60 8.06 -2.91 -0.02 2.58 16 Total: -1.00 -71.65 393.80 3.55 -68.09 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.93 Total: 12.01 kcal Atomic # 6 Polarization: -1.33 SS G_CDS: 5.83 Total: 4.50 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.80 Total: -100.46 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: -0.44 Total: -29.95 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -71.65 3.55 -68.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088198452.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.752 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds