Wall clock time and date at job start Wed Apr 1 2020 03:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38389 * 119.92652 * 2 1 4 4 C 1.38329 * 120.29159 * 179.97438 * 3 2 1 5 5 C 1.37977 * 120.14856 * 359.78913 * 4 3 2 6 6 C 1.50699 * 120.08067 * 180.23150 * 5 4 3 7 7 C 1.53002 * 117.49438 * 1.23599 * 6 5 4 8 8 C 1.52993 * 60.00173 * 252.51431 * 7 6 5 9 9 C 1.39568 * 119.85028 * 0.44440 * 5 4 3 10 10 C 1.47840 * 120.14231 * 179.81336 * 9 5 4 11 11 O 1.21545 * 120.00708 * 353.20712 * 10 9 5 12 12 N 1.34780 * 119.99741 * 173.20914 * 10 9 5 13 13 C 1.46503 * 119.99953 * 179.97438 * 12 10 9 14 14 H 1.09000 * 109.45909 * 325.02531 * 13 12 10 15 15 C 1.53041 * 109.45918 * 85.00155 * 13 12 10 16 16 C 1.53192 * 109.31134 * 181.38586 * 15 13 12 17 17 N 1.46923 * 108.77373 * 305.36180 * 16 15 13 18 18 C 1.36942 * 120.62945 * 233.60733 * 17 16 15 19 19 H 1.07994 * 120.00120 * 30.70159 * 18 17 16 20 20 C 1.38810 * 119.99715 * 210.69845 * 18 17 16 21 21 N 1.31621 * 120.00330 * 16.24401 * 20 18 17 22 22 Si 1.86806 * 119.99795 * 196.23890 * 20 18 17 23 23 H 1.48505 * 109.46802 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.46747 * 120.00302 * 22 20 18 25 25 H 1.48493 * 109.47397 * 240.00270 * 22 20 18 26 26 C 1.46924 * 118.74159 * 53.60964 * 17 16 15 27 27 C 1.53042 * 109.45583 * 205.06614 * 13 12 10 28 28 H 1.08996 * 109.49947 * 58.66933 * 27 13 12 29 29 O 1.42897 * 109.50197 * 298.56287 * 27 13 12 30 30 C 1.37926 * 119.92735 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47276 * 270.02216 * 1 2 3 32 32 H 1.09007 * 109.47304 * 30.02266 * 1 2 3 33 33 H 1.09004 * 109.47211 * 150.02233 * 1 2 3 34 34 H 1.08003 * 119.85193 * 0.02562 * 3 2 1 35 35 H 1.08001 * 119.92505 * 180.02562 * 4 3 2 36 36 H 1.08998 * 115.55600 * 146.95231 * 6 5 4 37 37 H 1.08998 * 117.49996 * 0.02562 * 7 6 5 38 38 H 1.08999 * 117.49633 * 145.01996 * 7 6 5 39 39 H 1.09002 * 117.49990 * 252.50690 * 8 7 6 40 40 H 1.09003 * 117.51816 * 107.48682 * 8 7 6 41 41 H 0.97004 * 120.00322 * 359.97438 * 12 10 9 42 42 H 1.08999 * 109.50006 * 61.43332 * 15 13 12 43 43 H 1.09005 * 109.52125 * 301.35236 * 15 13 12 44 44 H 1.09002 * 109.58971 * 65.14817 * 16 15 13 45 45 H 1.09000 * 109.58671 * 185.57372 * 16 15 13 46 46 H 0.97003 * 119.99570 * 179.97438 * 21 20 18 47 47 H 1.09003 * 109.58922 * 186.60225 * 26 17 16 48 48 H 1.09010 * 109.70313 * 66.24430 * 26 17 16 49 49 H 0.96699 * 114.00463 * 180.02562 * 29 27 13 50 50 H 1.08001 * 120.07764 * 359.97438 * 30 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1994 0.0000 4 6 3.5806 1.2082 0.0005 5 6 4.2812 0.0195 0.0055 6 6 5.7881 0.0309 0.0113 7 6 6.4841 1.3932 0.0408 8 6 6.4954 0.5560 -1.2397 9 6 3.5911 -1.1936 0.0005 10 6 4.3353 -2.4710 0.0016 11 8 5.5448 -2.4700 -0.1177 12 7 3.6723 -3.6370 0.1349 13 6 4.4097 -4.9029 0.1354 14 1 5.2575 -4.8296 -0.5458 15 6 4.9156 -5.1977 1.5494 16 6 5.7153 -6.5043 1.5392 17 7 4.8787 -7.5663 0.9640 18 6 4.6725 -8.7372 1.6436 19 1 4.6669 -8.7409 2.7235 20 6 4.4707 -9.9192 0.9443 21 7 4.7876 -9.9916 -0.3312 22 14 3.7496 -11.4071 1.8135 23 1 3.4809 -11.0683 3.2342 24 1 2.4805 -11.8008 1.1503 25 1 4.7134 -12.5347 1.7468 26 6 4.2675 -7.3483 -0.3542 27 6 3.4839 -6.0322 -0.3228 28 1 3.1056 -5.8102 -1.3206 29 8 2.3891 -6.1506 0.5878 30 6 2.1951 -1.1954 0.0005 31 1 -0.3634 0.0004 1.0276 32 1 -0.3634 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5135 34 1 1.6537 2.1326 0.0004 35 1 4.1134 2.1476 0.0009 36 1 6.2625 -0.7888 0.5509 37 1 5.8520 2.2810 0.0564 38 1 7.4164 1.4700 0.6002 39 1 7.4353 0.0820 -1.5229 40 1 5.8708 0.8927 -2.0671 41 1 2.7070 -3.6379 0.2305 42 1 4.0669 -5.2959 2.2263 43 1 5.5559 -4.3818 1.8846 44 1 6.6132 -6.3784 0.9341 45 1 5.9937 -6.7703 2.5589 46 1 4.6468 -10.8178 -0.8196 47 1 3.5905 -8.1712 -0.5837 48 1 5.0457 -7.2921 -1.1154 49 1 1.7607 -6.8491 0.3587 50 1 1.6552 -2.1307 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090447607.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:46 Heat of formation + Delta-G solvation = -12.629692 kcal Electronic energy + Delta-G solvation = -30695.230310 eV Core-core repulsion = 26688.573255 eV Total energy + Delta-G solvation = -4006.657055 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.61267 -39.06870 -37.71617 -37.05874 -34.79934 -34.30408 -32.63816 -32.22370 -31.24165 -29.29113 -29.00597 -27.32210 -25.35309 -23.91360 -23.19888 -22.36682 -22.27289 -21.73580 -20.36699 -20.09483 -19.29216 -17.56535 -17.08986 -16.61172 -16.11702 -15.55507 -15.32961 -15.09215 -14.90836 -14.73457 -14.53359 -14.00577 -13.92823 -13.92561 -13.77388 -13.49727 -13.21375 -12.78088 -12.57805 -12.33398 -12.21526 -12.08974 -11.99159 -11.76458 -11.63027 -11.30558 -11.19617 -11.12647 -10.82698 -10.63948 -10.58737 -10.51218 -10.45049 -10.15863 -10.04183 -9.72553 -9.36692 -9.19233 -9.15955 -8.71486 -8.55607 -8.47868 -6.65219 -5.82937 -3.26152 0.73886 1.10280 2.89207 3.32642 3.36490 3.43035 3.45867 3.60414 3.98217 4.40629 4.46692 4.52120 4.61767 4.66861 4.82805 4.84984 4.98351 5.05033 5.16762 5.25755 5.29645 5.31761 5.35238 5.40028 5.46230 5.52556 5.56399 5.58047 5.69772 5.78660 5.87010 5.95550 6.02172 6.02915 6.06524 6.13642 6.21238 6.27118 6.29793 6.45816 6.52787 6.58173 6.68616 6.80632 6.87632 6.98576 7.15895 7.39102 7.75825 7.79329 8.22327 8.42680 8.43511 9.17183 9.79586 10.38311 11.25869 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017379 B = 0.002660 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.764627 B =10523.117991 C =11641.994344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.101 4.101 3 C -0.095 4.095 4 C -0.130 4.130 5 C 0.002 3.998 6 C -0.113 4.113 7 C -0.189 4.189 8 C -0.159 4.159 9 C -0.123 4.123 10 C 0.552 3.448 11 O -0.532 6.532 12 N -0.713 5.713 13 C 0.164 3.836 14 H 0.091 0.909 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.582 5.582 18 C -0.244 4.244 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.905 5.905 22 Si 0.902 3.098 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.291 1.291 26 C 0.148 3.852 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.560 6.560 30 C -0.083 4.083 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.140 0.860 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.400 0.600 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.020 0.980 45 H 0.057 0.943 46 H 0.253 0.747 47 H 0.090 0.910 48 H 0.028 0.972 49 H 0.375 0.625 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.797 22.796 -1.795 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.147 4.147 5 C 0.001 3.999 6 C -0.131 4.131 7 C -0.226 4.226 8 C -0.196 4.196 9 C -0.126 4.126 10 C 0.340 3.660 11 O -0.411 6.411 12 N -0.364 5.364 13 C 0.060 3.940 14 H 0.109 0.891 15 C -0.176 4.176 16 C 0.022 3.978 17 N -0.304 5.304 18 C -0.374 4.374 19 H 0.082 0.918 20 C -0.197 4.197 21 N -0.550 5.550 22 Si 0.732 3.268 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.021 3.979 27 C 0.011 3.989 28 H 0.061 0.939 29 O -0.365 6.365 30 C -0.102 4.102 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.158 0.842 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.235 0.765 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.108 0.892 48 H 0.046 0.954 49 H 0.222 0.778 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.618 23.096 -1.684 23.829 hybrid contribution -1.184 -1.317 0.048 1.772 sum -6.801 21.779 -1.636 22.875 Atomic orbital electron populations 1.20791 0.90760 1.02939 1.02539 1.19830 0.96334 0.92824 1.01111 1.21166 0.94010 0.97595 0.98533 1.21027 0.94003 0.97746 1.01960 1.19228 0.94086 0.91567 0.95057 1.21395 0.90068 0.98184 1.03462 1.23110 1.02734 0.94711 1.02014 1.22869 1.02320 1.02999 0.91377 1.19849 0.93384 0.93421 1.05906 1.18250 0.87281 0.83632 0.76867 1.90698 1.13579 1.86917 1.49869 1.46169 1.11203 1.05852 1.73139 1.21014 0.93899 0.80254 0.98834 0.89074 1.22302 1.00599 0.98821 0.95875 1.20899 0.91935 0.87372 0.97639 1.43846 1.53643 1.14415 1.18522 1.19193 1.43361 0.84378 0.90500 0.91769 1.25097 1.00965 0.97265 0.96354 1.70031 1.49889 1.26496 1.08580 0.86228 0.78583 0.82841 0.79160 1.20222 1.21635 1.21757 1.21374 0.95934 0.92759 0.87833 1.22845 0.88032 0.97584 0.90396 0.93917 1.86347 1.37424 1.58706 1.54050 1.21219 0.92797 0.98173 0.97999 0.91014 0.91509 0.91306 0.85741 0.85333 0.84205 0.88887 0.88557 0.88428 0.89173 0.76491 0.91259 0.92880 0.96248 0.92455 0.93696 0.89159 0.95363 0.77844 0.85449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.01 36.00 0.36 -0.41 16 2 C -0.10 -0.95 5.87 -104.68 -0.61 -1.56 16 3 C -0.09 -0.84 9.69 -39.49 -0.38 -1.22 16 4 C -0.13 -1.29 9.37 -39.64 -0.37 -1.66 16 5 C 0.00 0.02 5.62 -104.22 -0.59 -0.57 16 6 C -0.11 -1.43 4.70 -91.77 -0.43 -1.86 16 7 C -0.19 -1.82 9.87 -26.73 -0.26 -2.09 16 8 C -0.16 -1.74 10.23 -26.73 -0.27 -2.02 16 9 C -0.12 -1.63 5.87 -104.96 -0.62 -2.24 16 10 C 0.55 8.69 7.69 -12.33 -0.09 8.59 16 11 O -0.53 -9.70 13.02 5.33 0.07 -9.63 16 12 N -0.71 -10.85 5.00 -54.71 -0.27 -11.13 16 13 C 0.16 2.91 2.20 -67.89 -0.15 2.77 16 14 H 0.09 1.76 7.58 -51.93 -0.39 1.37 16 15 C -0.14 -2.59 5.51 -26.61 -0.15 -2.74 16 16 C 0.15 3.23 6.52 -3.71 -0.02 3.20 16 17 N -0.58 -14.30 2.92 -172.31 -0.50 -14.81 16 18 C -0.24 -6.60 9.56 -15.06 -0.14 -6.74 16 19 H 0.06 1.74 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 21 N -0.91 -25.58 11.35 55.49 0.63 -24.96 16 22 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.15 3.35 4.92 -3.71 -0.02 3.33 16 27 C 0.07 1.31 3.38 -26.61 -0.09 1.22 16 28 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 29 O -0.56 -9.72 12.09 -35.23 -0.43 -10.14 16 30 C -0.08 -0.91 9.17 -39.19 -0.36 -1.27 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.37 8.09 -51.92 -0.42 -0.05 16 33 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 35 H 0.13 1.03 5.93 -52.49 -0.31 0.71 16 36 H 0.14 2.11 5.97 -51.93 -0.31 1.80 16 37 H 0.09 0.75 6.08 -51.93 -0.32 0.43 16 38 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.40 5.37 6.33 -40.82 -0.26 5.11 16 42 H 0.07 1.39 7.61 -51.93 -0.40 1.00 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 46 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 47 H 0.09 2.23 6.24 -51.93 -0.32 1.90 16 48 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 49 H 0.37 5.61 9.08 45.56 0.41 6.02 16 50 H 0.13 1.23 6.46 -52.49 -0.34 0.89 16 LS Contribution 395.15 15.07 5.95 5.95 Total: -1.00 -31.06 395.15 -10.71 -41.77 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.84 Total: 11.99 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -4.29 Total: -5.31 kcal Atomic # 7 Polarization: -50.74 SS G_CDS: -0.15 Total: -50.89 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.36 Total: -19.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.06 -10.71 -41.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090447607.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.140 kcal (2) G-P(sol) polarization free energy of solvation -31.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds