Wall clock time and date at job start Wed Apr 1 2020 03:10:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.43692 * 2 1 4 4 O 1.21284 * 120.00447 * 355.41085 * 3 2 1 5 5 N 1.34782 * 119.99916 * 175.41572 * 3 2 1 6 6 C 1.46498 * 119.99764 * 185.00983 * 5 3 2 7 7 C 1.53036 * 109.46398 * 275.02573 * 6 5 3 8 8 C 1.53190 * 109.31366 * 178.59947 * 7 6 5 9 9 N 1.46933 * 108.76279 * 54.66261 * 8 7 6 10 10 C 1.36935 * 120.63102 * 126.36244 * 9 8 7 11 11 H 1.08002 * 119.99664 * 208.56958 * 10 9 8 12 12 C 1.38814 * 120.00131 * 28.56410 * 10 9 8 13 13 N 1.31618 * 120.00018 * 18.55641 * 12 10 9 14 14 Si 1.86796 * 119.99707 * 198.55307 * 12 10 9 15 15 H 1.48502 * 109.47216 * 94.99002 * 14 12 10 16 16 H 1.48506 * 109.47053 * 214.98789 * 14 12 10 17 17 H 1.48498 * 109.47394 * 334.98675 * 14 12 10 18 18 C 1.46928 * 118.73392 * 306.37898 * 9 8 7 19 19 C 1.53042 * 109.45697 * 154.97306 * 6 5 3 20 20 C 1.53069 * 109.43622 * 240.12037 * 2 1 3 21 21 C 1.53407 * 108.30385 * 288.20615 * 20 2 1 22 22 O 1.42822 * 108.39817 * 295.34400 * 21 20 2 23 23 C 1.35846 * 117.86833 * 49.18096 * 22 21 20 24 24 C 1.39150 * 118.50669 * 162.90746 * 23 22 21 25 25 C 1.37965 * 120.21324 * 179.49697 * 24 23 22 26 26 C 1.38293 * 119.96249 * 0.02562 * 25 24 23 27 27 C 1.38105 * 119.98095 * 0.09143 * 26 25 24 28 28 C 1.38366 * 121.80003 * 342.59670 * 23 22 21 29 29 H 1.09006 * 109.47058 * 300.08315 * 1 2 3 30 30 H 1.09001 * 109.47189 * 60.08142 * 1 2 3 31 31 H 1.09002 * 109.46878 * 180.08711 * 1 2 3 32 32 H 0.96993 * 120.00296 * 5.01480 * 5 3 2 33 33 H 1.09000 * 109.45854 * 35.00346 * 6 5 3 34 34 H 1.08996 * 109.49951 * 298.56932 * 7 6 5 35 35 H 1.09006 * 109.49732 * 58.66812 * 7 6 5 36 36 H 1.08998 * 109.60207 * 294.87153 * 8 7 6 37 37 H 1.09008 * 109.70099 * 174.50536 * 8 7 6 38 38 H 0.96999 * 119.99696 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.58676 * 293.81938 * 18 9 8 40 40 H 1.08998 * 109.69824 * 173.46626 * 18 9 8 41 41 H 1.08994 * 109.50084 * 301.33619 * 19 6 5 42 42 H 1.08996 * 109.49812 * 61.40464 * 19 6 5 43 43 H 1.08993 * 109.69938 * 47.91089 * 20 2 1 44 44 H 1.09001 * 109.69444 * 168.46739 * 20 2 1 45 45 H 1.09001 * 109.67522 * 55.07009 * 21 20 2 46 46 H 1.08997 * 109.68178 * 175.58079 * 21 20 2 47 47 H 1.08004 * 119.89278 * 359.21850 * 24 23 22 48 48 H 1.08003 * 120.02084 * 180.02562 * 25 24 23 49 49 H 1.07995 * 120.01094 * 180.12154 * 26 25 24 50 50 H 1.08000 * 119.84535 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 1.2460 2.3414 -0.0840 5 7 3.3529 1.6694 0.0933 6 6 3.8329 3.0491 0.2039 7 6 3.9659 3.6564 -1.1945 8 6 4.4344 5.1098 -1.0731 9 7 5.6715 5.1431 -0.2810 10 6 6.7955 5.7551 -0.7680 11 1 7.7727 5.4150 -0.4584 12 6 6.6790 6.8126 -1.6597 13 7 5.5404 7.4649 -1.7618 14 14 8.1383 7.3099 -2.7145 15 1 8.0408 6.6456 -4.0391 16 1 8.1368 8.7835 -2.8985 17 1 9.3973 6.8960 -2.0446 18 6 5.6796 4.5068 1.0433 19 6 5.1968 3.0602 0.8982 20 6 2.0394 -0.7191 -1.2516 21 6 1.7706 -2.2205 -1.0876 22 8 2.5518 -2.7014 0.0071 23 6 2.5030 -2.0088 1.1747 24 6 2.9480 -2.6327 2.3361 25 6 2.9238 -1.9584 3.5395 26 6 2.4556 -0.6582 3.5934 27 6 2.0109 -0.0367 2.4431 28 6 2.0317 -0.7091 1.2324 29 1 -0.3633 0.5152 0.8893 30 1 -0.3633 0.5126 -0.8907 31 1 -0.3633 -1.0277 0.0016 32 1 3.9861 0.9347 0.0871 33 1 3.1232 3.6347 0.7882 34 1 4.6942 3.0861 -1.7710 35 1 2.9993 3.6268 -1.6974 36 1 3.6659 5.7014 -0.5756 37 1 4.6249 5.5186 -2.0656 38 1 5.4592 8.2041 -2.3846 39 1 5.0127 5.0492 1.7134 40 1 6.6913 4.5154 1.4488 41 1 5.1064 2.6063 1.8850 42 1 5.9131 2.4951 0.3020 43 1 1.5130 -0.3454 -2.1298 44 1 3.1098 -0.5471 -1.3640 45 1 0.7124 -2.3837 -0.8830 46 1 2.0533 -2.7459 -1.9997 47 1 3.3093 -3.6498 2.2962 48 1 3.2704 -2.4456 4.4390 49 1 2.4382 -0.1290 4.5346 50 1 1.6453 0.9786 2.4878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932216212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:08 Heat of formation + Delta-G solvation = -34.649314 kcal Electronic energy + Delta-G solvation = -31412.373082 eV Core-core repulsion = 27404.761185 eV Total energy + Delta-G solvation = -4007.611898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.56194 -39.50156 -37.75462 -37.46378 -35.30472 -34.43683 -32.08357 -30.99482 -30.57383 -30.05355 -29.47795 -28.50233 -25.75659 -24.63401 -23.87897 -22.97581 -22.24589 -21.85525 -20.71465 -19.59791 -18.99149 -18.22630 -17.32859 -16.77719 -16.52581 -16.33535 -15.81886 -15.21824 -14.82172 -14.71135 -14.37530 -14.07192 -13.99581 -13.84442 -13.63582 -13.55146 -13.51360 -13.00481 -12.84131 -12.49616 -12.43320 -12.34087 -12.19825 -12.05826 -11.70384 -11.48099 -11.32093 -11.16742 -10.98302 -10.89345 -10.86517 -10.74610 -10.39540 -10.22670 -10.07195 -9.81943 -9.75131 -9.45527 -9.02960 -8.69050 -8.43485 -8.40996 -6.68560 -5.79189 -3.21730 1.03551 1.19267 2.68249 2.98154 3.26784 3.37993 3.44967 3.46379 3.52361 4.22274 4.27688 4.38145 4.49551 4.54894 4.70167 4.84849 4.91652 4.94992 5.10110 5.17911 5.20845 5.25050 5.31029 5.40374 5.45913 5.50138 5.54088 5.59279 5.63029 5.68279 5.79013 5.83126 5.99520 6.06022 6.07346 6.21845 6.24128 6.31757 6.35093 6.43902 6.51706 6.60069 6.65407 6.77183 6.91172 6.93993 7.15430 7.35372 7.64258 7.71181 7.80251 8.36710 8.44867 9.20544 9.84029 10.41352 11.29491 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002784 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.473815 B =10055.793306 C =10450.365451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.036 4.036 3 C 0.526 3.474 4 O -0.534 6.534 5 N -0.718 5.718 6 C 0.153 3.847 7 C -0.146 4.146 8 C 0.175 3.825 9 N -0.592 5.592 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.004 3.996 13 N -0.899 5.899 14 Si 0.901 3.099 15 H -0.288 1.288 16 H -0.291 1.291 17 H -0.278 1.278 18 C 0.149 3.851 19 C -0.138 4.138 20 C -0.151 4.151 21 C 0.063 3.937 22 O -0.315 6.315 23 C 0.138 3.862 24 C -0.152 4.152 25 C -0.083 4.083 26 C -0.150 4.150 27 C -0.070 4.070 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.059 0.941 32 H 0.394 0.606 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.086 0.914 38 H 0.254 0.746 39 H 0.020 0.980 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.112 0.888 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.125 0.875 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.833 -22.654 6.301 25.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C 0.310 3.690 4 O -0.410 6.410 5 N -0.367 5.367 6 C 0.050 3.950 7 C -0.186 4.186 8 C 0.049 3.951 9 N -0.315 5.315 10 C -0.386 4.386 11 H 0.083 0.917 12 C -0.195 4.195 13 N -0.543 5.543 14 Si 0.731 3.269 15 H -0.215 1.215 16 H -0.218 1.218 17 H -0.204 1.204 18 C 0.022 3.978 19 C -0.178 4.178 20 C -0.188 4.188 21 C -0.011 4.011 22 O -0.229 6.229 23 C 0.093 3.907 24 C -0.170 4.170 25 C -0.101 4.101 26 C -0.168 4.168 27 C -0.089 4.089 28 C -0.152 4.152 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.228 0.772 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.130 0.870 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.143 0.857 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.315 -21.967 6.111 24.630 hybrid contribution 0.896 0.178 -0.677 1.137 sum -8.418 -21.789 5.434 23.982 Atomic orbital electron populations 1.21743 0.90936 1.01585 1.03907 1.19716 0.98031 0.92806 0.93383 1.20065 0.82796 0.89832 0.76276 1.90722 1.55426 1.45750 1.49114 1.46297 1.06679 1.09900 1.73806 1.21037 0.95575 0.80450 0.97975 1.22545 1.00112 1.00794 0.95143 1.20719 0.86980 0.89354 0.98090 1.44095 1.10341 1.64036 1.12991 1.19183 0.85819 1.09801 1.23775 0.91651 1.25059 0.96935 0.95622 1.01885 1.70060 1.25242 1.21307 1.37684 0.86293 0.82330 0.77415 0.80856 1.21493 1.21780 1.20353 1.20827 0.98683 0.89566 0.88713 1.22330 0.95523 1.00966 0.99006 1.22341 1.03266 0.95625 0.97612 1.23026 0.95517 0.94024 0.88582 1.85999 1.65643 1.52128 1.19106 1.18647 0.96535 0.89620 0.85868 1.20575 1.05404 1.00874 0.90159 1.20959 0.97662 0.94483 0.97006 1.21034 1.01788 0.95508 0.98449 1.20965 0.96972 0.99522 0.91397 1.19461 1.06748 0.93844 0.95163 0.91479 0.91085 0.92207 0.77219 0.90217 0.92742 0.92804 0.96140 0.89593 0.93601 0.96257 0.92351 0.92648 0.91924 0.88786 0.89789 0.91267 0.87033 0.85204 0.85368 0.85706 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.30 7.54 37.16 0.28 -1.02 16 2 C -0.04 -0.40 0.51 -156.74 -0.08 -0.48 16 3 C 0.53 7.66 5.16 -10.99 -0.06 7.61 16 4 O -0.53 -9.81 15.64 5.55 0.09 -9.72 16 5 N -0.72 -10.28 4.77 -53.77 -0.26 -10.54 16 6 C 0.15 2.66 2.38 -67.89 -0.16 2.50 16 7 C -0.15 -2.91 5.65 -26.61 -0.15 -3.06 16 8 C 0.17 4.27 5.32 -3.71 -0.02 4.25 16 9 N -0.59 -14.83 2.99 -172.31 -0.51 -15.34 16 10 C -0.26 -7.02 9.57 -15.06 -0.14 -7.17 16 11 H 0.07 1.76 7.90 -52.49 -0.41 1.34 16 12 C 0.00 0.11 4.87 -17.43 -0.08 0.03 16 13 N -0.90 -26.36 11.33 55.49 0.63 -25.73 16 14 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 C 0.15 3.09 6.51 -3.71 -0.02 3.07 16 19 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 20 C -0.15 -1.38 4.91 -26.49 -0.13 -1.51 16 21 C 0.06 0.48 6.96 37.37 0.26 0.75 16 22 O -0.31 -3.17 10.27 -19.26 -0.20 -3.37 16 23 C 0.14 1.46 6.47 -39.20 -0.25 1.21 16 24 C -0.15 -1.43 9.94 -39.34 -0.39 -1.82 16 25 C -0.08 -0.71 10.04 -39.66 -0.40 -1.11 16 26 C -0.15 -1.43 10.04 -39.61 -0.40 -1.82 16 27 C -0.07 -0.78 9.03 -39.53 -0.36 -1.14 16 28 C -0.15 -1.65 4.39 -104.44 -0.46 -2.11 16 29 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 31 H 0.06 0.51 6.66 -51.93 -0.35 0.16 16 32 H 0.39 4.98 7.92 -40.82 -0.32 4.65 16 33 H 0.08 1.55 7.65 -51.93 -0.40 1.16 16 34 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.05 1.09 8.09 -51.93 -0.42 0.67 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 2.34 6.14 -51.92 -0.32 2.02 16 38 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.09 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.08 0.81 7.49 -51.93 -0.39 0.42 16 45 H 0.07 0.47 6.57 -51.93 -0.34 0.13 16 46 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 48 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 49 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 50 H 0.12 1.49 7.36 -52.49 -0.39 1.11 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -31.93 390.08 -10.07 -42.00 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.95 Total: 4.45 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -2.72 Total: -4.31 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.14 Total: -51.61 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: -0.11 Total: -13.09 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.93 -10.07 -42.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.348 kcal (2) G-P(sol) polarization free energy of solvation -31.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds