Wall clock time and date at job start Wed Apr 1 2020 03:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 109.43692 * 2 1 4 4 O 1.21284 * 120.00447 * 355.41085 * 3 2 1 5 5 N 1.34782 * 119.99916 * 175.41572 * 3 2 1 6 6 C 1.46498 * 119.99764 * 185.00983 * 5 3 2 7 7 C 1.53036 * 109.46398 * 275.02573 * 6 5 3 8 8 C 1.53190 * 109.31366 * 178.59947 * 7 6 5 9 9 N 1.46933 * 108.76279 * 54.66261 * 8 7 6 10 10 C 1.36935 * 120.63102 * 126.36244 * 9 8 7 11 11 H 1.08002 * 119.99664 * 208.56958 * 10 9 8 12 12 C 1.38814 * 120.00131 * 28.56410 * 10 9 8 13 13 N 1.31618 * 120.00018 * 18.55641 * 12 10 9 14 14 Si 1.86796 * 119.99707 * 198.55307 * 12 10 9 15 15 H 1.48502 * 109.47216 * 94.99002 * 14 12 10 16 16 H 1.48506 * 109.47053 * 214.98789 * 14 12 10 17 17 H 1.48498 * 109.47394 * 334.98675 * 14 12 10 18 18 C 1.46928 * 118.73392 * 306.37898 * 9 8 7 19 19 C 1.53042 * 109.45697 * 154.97306 * 6 5 3 20 20 C 1.53069 * 109.43622 * 240.12037 * 2 1 3 21 21 C 1.53407 * 108.30385 * 288.20615 * 20 2 1 22 22 O 1.42822 * 108.39817 * 295.34400 * 21 20 2 23 23 C 1.35846 * 117.86833 * 49.18096 * 22 21 20 24 24 C 1.39150 * 118.50669 * 162.90746 * 23 22 21 25 25 C 1.37965 * 120.21324 * 179.49697 * 24 23 22 26 26 C 1.38293 * 119.96249 * 0.02562 * 25 24 23 27 27 C 1.38105 * 119.98095 * 0.09143 * 26 25 24 28 28 C 1.38366 * 121.80003 * 342.59670 * 23 22 21 29 29 H 1.09006 * 109.47058 * 300.08315 * 1 2 3 30 30 H 1.09001 * 109.47189 * 60.08142 * 1 2 3 31 31 H 1.09002 * 109.46878 * 180.08711 * 1 2 3 32 32 H 0.96993 * 120.00296 * 5.01480 * 5 3 2 33 33 H 1.09000 * 109.45854 * 35.00346 * 6 5 3 34 34 H 1.08996 * 109.49951 * 298.56932 * 7 6 5 35 35 H 1.09006 * 109.49732 * 58.66812 * 7 6 5 36 36 H 1.08998 * 109.60207 * 294.87153 * 8 7 6 37 37 H 1.09008 * 109.70099 * 174.50536 * 8 7 6 38 38 H 0.96999 * 119.99696 * 179.97438 * 13 12 10 39 39 H 1.08998 * 109.58676 * 293.81938 * 18 9 8 40 40 H 1.08998 * 109.69824 * 173.46626 * 18 9 8 41 41 H 1.08994 * 109.50084 * 301.33619 * 19 6 5 42 42 H 1.08996 * 109.49812 * 61.40464 * 19 6 5 43 43 H 1.08993 * 109.69938 * 47.91089 * 20 2 1 44 44 H 1.09001 * 109.69444 * 168.46739 * 20 2 1 45 45 H 1.09001 * 109.67522 * 55.07009 * 21 20 2 46 46 H 1.08997 * 109.68178 * 175.58079 * 21 20 2 47 47 H 1.08004 * 119.89278 * 359.21850 * 24 23 22 48 48 H 1.08003 * 120.02084 * 180.02562 * 25 24 23 49 49 H 1.07995 * 120.01094 * 180.12154 * 26 25 24 50 50 H 1.08000 * 119.84535 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0315 1.4211 0.0000 4 8 1.2460 2.3414 -0.0840 5 7 3.3529 1.6694 0.0933 6 6 3.8329 3.0491 0.2039 7 6 3.9659 3.6564 -1.1945 8 6 4.4344 5.1098 -1.0731 9 7 5.6715 5.1431 -0.2810 10 6 6.7955 5.7551 -0.7680 11 1 7.7727 5.4150 -0.4584 12 6 6.6790 6.8126 -1.6597 13 7 5.5404 7.4649 -1.7618 14 14 8.1383 7.3099 -2.7145 15 1 8.0408 6.6456 -4.0391 16 1 8.1368 8.7835 -2.8985 17 1 9.3973 6.8960 -2.0446 18 6 5.6796 4.5068 1.0433 19 6 5.1968 3.0602 0.8982 20 6 2.0394 -0.7191 -1.2516 21 6 1.7706 -2.2205 -1.0876 22 8 2.5518 -2.7014 0.0071 23 6 2.5030 -2.0088 1.1747 24 6 2.9480 -2.6327 2.3361 25 6 2.9238 -1.9584 3.5395 26 6 2.4556 -0.6582 3.5934 27 6 2.0109 -0.0367 2.4431 28 6 2.0317 -0.7091 1.2324 29 1 -0.3633 0.5152 0.8893 30 1 -0.3633 0.5126 -0.8907 31 1 -0.3633 -1.0277 0.0016 32 1 3.9861 0.9347 0.0871 33 1 3.1232 3.6347 0.7882 34 1 4.6942 3.0861 -1.7710 35 1 2.9993 3.6268 -1.6974 36 1 3.6659 5.7014 -0.5756 37 1 4.6249 5.5186 -2.0656 38 1 5.4592 8.2041 -2.3846 39 1 5.0127 5.0492 1.7134 40 1 6.6913 4.5154 1.4488 41 1 5.1064 2.6063 1.8850 42 1 5.9131 2.4951 0.3020 43 1 1.5130 -0.3454 -2.1298 44 1 3.1098 -0.5471 -1.3640 45 1 0.7124 -2.3837 -0.8830 46 1 2.0533 -2.7459 -1.9997 47 1 3.3093 -3.6498 2.2962 48 1 3.2704 -2.4456 4.4390 49 1 2.4382 -0.1290 4.5346 50 1 1.6453 0.9786 2.4878 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932216212.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:07 Heat of formation + Delta-G solvation = -53.553656 kcal Electronic energy + Delta-G solvation = -31413.192836 eV Core-core repulsion = 27404.761185 eV Total energy + Delta-G solvation = -4008.431651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.42060 -40.65395 -39.05894 -38.44916 -36.26276 -36.04832 -33.89086 -31.83867 -31.65185 -31.30554 -31.21889 -29.27815 -27.29161 -25.86824 -24.74701 -23.96933 -23.89488 -23.27959 -21.79938 -21.14078 -20.06573 -19.11897 -18.72672 -18.13393 -17.44500 -17.18900 -17.08982 -16.71043 -15.94809 -15.78043 -15.66774 -15.39668 -15.22069 -15.08982 -14.86346 -14.70673 -14.56362 -14.40017 -14.21112 -14.04973 -13.47423 -13.23906 -13.13125 -13.08019 -12.98439 -12.85478 -12.65972 -12.63401 -12.44280 -12.16580 -12.08690 -12.03341 -11.89526 -11.74913 -11.59368 -11.56616 -11.39152 -10.74319 -10.60089 -10.06333 -9.78574 -9.14934 -8.73954 -7.90057 -5.36129 0.29744 0.45619 1.46362 1.47762 1.52424 1.57403 2.08713 2.34805 2.50061 2.77006 3.25462 3.41505 3.45596 3.58611 3.63690 3.72674 3.82723 3.97971 4.03613 4.10946 4.22149 4.25528 4.28982 4.42783 4.44750 4.49611 4.54060 4.56858 4.62359 4.73923 4.76783 4.77399 4.84512 4.86933 4.93811 5.00295 5.03286 5.05365 5.09445 5.18361 5.27015 5.32863 5.40544 5.48731 5.51108 5.60001 5.61476 5.65799 5.83417 6.36168 6.45412 6.51277 7.10875 7.19109 7.81434 8.34983 9.17215 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.002784 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.473815 B =10055.793306 C =10450.365451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.028 4.028 3 C 0.526 3.474 4 O -0.577 6.577 5 N -0.706 5.706 6 C 0.165 3.835 7 C -0.129 4.129 8 C 0.185 3.815 9 N -0.608 5.608 10 C -0.264 4.264 11 H 0.073 0.927 12 C -0.051 4.051 13 N -0.936 5.936 14 Si 0.968 3.032 15 H -0.287 1.287 16 H -0.297 1.297 17 H -0.264 1.264 18 C 0.143 3.857 19 C -0.121 4.121 20 C -0.150 4.150 21 C 0.064 3.936 22 O -0.322 6.322 23 C 0.131 3.869 24 C -0.156 4.156 25 C -0.077 4.077 26 C -0.154 4.154 27 C -0.087 4.087 28 C -0.159 4.159 29 H 0.050 0.950 30 H 0.064 0.936 31 H 0.083 0.917 32 H 0.407 0.593 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.047 0.953 36 H -0.010 1.010 37 H 0.052 0.948 38 H 0.250 0.750 39 H 0.012 0.988 40 H 0.067 0.933 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.101 0.899 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.138 0.862 47 H 0.147 0.853 48 H 0.157 0.843 49 H 0.138 0.862 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -26.102 6.904 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.032 4.032 3 C 0.313 3.687 4 O -0.456 6.456 5 N -0.355 5.355 6 C 0.060 3.940 7 C -0.169 4.169 8 C 0.058 3.942 9 N -0.332 5.332 10 C -0.394 4.394 11 H 0.090 0.910 12 C -0.247 4.247 13 N -0.582 5.582 14 Si 0.796 3.204 15 H -0.214 1.214 16 H -0.224 1.224 17 H -0.188 1.188 18 C 0.017 3.983 19 C -0.160 4.160 20 C -0.188 4.188 21 C -0.011 4.011 22 O -0.236 6.236 23 C 0.086 3.914 24 C -0.174 4.174 25 C -0.095 4.095 26 C -0.172 4.172 27 C -0.106 4.106 28 C -0.160 4.160 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.243 0.757 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.008 0.992 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.119 0.881 44 H 0.099 0.901 45 H 0.098 0.902 46 H 0.156 0.844 47 H 0.165 0.835 48 H 0.175 0.825 49 H 0.156 0.844 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -8.111 -25.474 6.737 27.570 hybrid contribution 0.485 1.243 -0.782 1.547 sum -7.627 -24.231 5.955 26.091 Atomic orbital electron populations 1.21735 0.90638 1.02734 1.02821 1.19651 0.98221 0.90314 0.94967 1.20737 0.82223 0.91103 0.74677 1.90706 1.56401 1.47557 1.50918 1.46032 1.07125 1.08780 1.73609 1.20647 0.95713 0.81809 0.95795 1.22283 0.99516 0.98017 0.97062 1.20430 0.86357 0.91526 0.95871 1.44338 1.09743 1.64332 1.14782 1.19565 0.86802 1.09493 1.23589 0.90971 1.25870 0.99529 0.95973 1.03328 1.70223 1.27464 1.21992 1.38528 0.85234 0.79694 0.76442 0.78989 1.21361 1.22357 1.18785 1.21011 0.99309 0.91390 0.86561 1.22120 0.94695 0.98367 1.00847 1.22381 1.03008 0.96766 0.96656 1.23232 0.96073 0.92797 0.88958 1.85996 1.66114 1.52208 1.19299 1.18789 0.96594 0.89427 0.86572 1.20890 1.04821 1.01680 0.90002 1.21287 0.96400 0.93881 0.97892 1.21252 1.01371 0.96154 0.98410 1.20929 0.98214 0.98993 0.92425 1.19382 1.07678 0.94317 0.94671 0.93069 0.91731 0.89827 0.75673 0.92520 0.92160 0.93476 0.99238 0.92929 0.94138 0.97038 0.91447 0.89448 0.90972 0.88059 0.90137 0.90192 0.84406 0.83545 0.82543 0.84389 0.87883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.48 7.54 71.98 0.54 -1.94 16 2 C -0.03 -0.60 0.51 -53.63 -0.03 -0.63 16 3 C 0.53 15.33 5.16 87.65 0.45 15.78 16 4 O -0.58 -21.92 15.64 -3.04 -0.05 -21.97 16 5 N -0.71 -19.66 4.77 -442.41 -2.11 -21.77 16 6 C 0.16 5.73 2.38 45.02 0.11 5.84 16 7 C -0.13 -5.25 5.65 30.67 0.17 -5.07 16 8 C 0.18 9.43 5.32 86.36 0.46 9.89 16 9 N -0.61 -30.98 2.99 -699.07 -2.09 -33.07 16 10 C -0.26 -14.59 9.57 84.03 0.80 -13.79 16 11 H 0.07 3.82 7.90 -2.91 -0.02 3.79 16 12 C -0.05 -2.91 4.87 84.86 0.41 -2.50 16 13 N -0.94 -56.91 11.33 21.65 0.25 -56.66 16 14 Si 0.97 45.14 29.59 68.60 2.03 47.17 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 17 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 18 C 0.14 5.87 6.51 86.36 0.56 6.43 16 19 C -0.12 -3.87 5.55 30.67 0.17 -3.70 16 20 C -0.15 -2.45 4.91 30.75 0.15 -2.30 16 21 C 0.06 0.78 6.96 72.12 0.50 1.28 16 22 O -0.32 -5.52 10.27 -91.82 -0.94 -6.46 16 23 C 0.13 2.44 6.47 22.52 0.15 2.59 16 24 C -0.16 -2.44 9.94 22.42 0.22 -2.22 16 25 C -0.08 -1.08 10.04 22.22 0.22 -0.85 16 26 C -0.15 -2.62 10.04 22.25 0.22 -2.40 16 27 C -0.09 -1.86 9.03 22.30 0.20 -1.66 16 28 C -0.16 -3.25 4.39 -19.75 -0.09 -3.33 16 29 H 0.05 1.19 8.12 -2.38 -0.02 1.17 16 30 H 0.06 1.38 8.05 -2.39 -0.02 1.36 16 31 H 0.08 1.27 6.66 -2.39 -0.02 1.25 16 32 H 0.41 9.49 7.92 -92.71 -0.73 8.76 16 33 H 0.06 2.27 7.65 -2.39 -0.02 2.25 16 34 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.97 8.09 -2.38 -0.02 1.95 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.05 3.01 6.14 -2.38 -0.01 3.00 16 38 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.01 0.49 8.14 -2.39 -0.02 0.48 16 40 H 0.07 2.62 7.94 -2.39 -0.02 2.60 16 41 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.10 1.50 8.10 -2.39 -0.02 1.48 16 44 H 0.08 1.38 7.49 -2.39 -0.02 1.36 16 45 H 0.08 0.83 6.57 -2.39 -0.02 0.81 16 46 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.15 1.78 8.06 -2.91 -0.02 1.75 16 48 H 0.16 1.27 8.06 -2.91 -0.02 1.24 16 49 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 50 H 0.10 2.56 7.36 -2.91 -0.02 2.54 16 Total: -1.00 -71.66 390.08 2.53 -69.13 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: 0.21 Total: 22.20 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.24 Total: 1.42 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -3.95 Total: -111.50 kcal Atomic # 8 Polarization: -27.44 SS G_CDS: -0.99 Total: -28.43 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -71.66 2.53 -69.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216212.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.579 kcal (2) G-P(sol) polarization free energy of solvation -71.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds