Wall clock time and date at job start Wed Apr 1 2020 03:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91284 * 2 1 4 4 C 1.54911 * 111.00328 * 236.10494 * 2 1 3 5 5 N 1.47420 * 104.83085 * 204.91617 * 4 2 1 6 6 C 1.36941 * 125.64780 * 204.16724 * 5 4 2 7 7 H 1.07995 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99836 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00525 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99660 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47459 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46949 * 120.00176 * 10 8 6 13 13 H 1.48499 * 109.47039 * 239.99627 * 10 8 6 14 14 C 1.47019 * 108.70526 * 24.12265 * 5 4 2 15 15 C 1.54322 * 107.27272 * 358.94746 * 14 5 4 16 16 H 1.09001 * 110.72041 * 219.26635 * 15 14 5 17 17 N 1.46495 * 110.72350 * 96.16230 * 15 14 5 18 18 C 1.34781 * 119.99336 * 86.45713 * 17 15 14 19 19 O 1.21549 * 120.00488 * 0.02562 * 18 17 15 20 20 C 1.47852 * 119.99610 * 180.02562 * 18 17 15 21 21 C 1.39460 * 120.01049 * 0.04113 * 20 18 17 22 22 C 1.37945 * 119.69415 * 179.97438 * 21 20 18 23 23 C 1.38212 * 120.05707 * 0.06045 * 22 21 20 24 24 C 1.38751 * 120.61046 * 0.02562 * 23 22 21 25 25 C 1.37663 * 119.87175 * 359.81394 * 24 23 22 26 26 C 1.50714 * 121.43003 * 180.31847 * 25 24 23 27 27 C 1.52976 * 109.78225 * 343.01954 * 26 25 24 28 28 O 1.43209 * 108.46626 * 49.08545 * 27 26 25 29 29 C 1.42714 * 113.12898 * 289.40489 * 28 27 26 30 30 H 1.08997 * 109.47234 * 296.09148 * 1 2 3 31 31 H 1.09000 * 109.47085 * 56.09896 * 1 2 3 32 32 H 1.09003 * 109.46697 * 176.09387 * 1 2 3 33 33 H 1.08998 * 109.47215 * 183.90325 * 3 2 1 34 34 H 1.08996 * 109.47432 * 303.90588 * 3 2 1 35 35 H 1.08998 * 109.46880 * 63.90423 * 3 2 1 36 36 H 1.09001 * 110.36689 * 86.07227 * 4 2 1 37 37 H 1.09008 * 110.36513 * 323.74952 * 4 2 1 38 38 H 0.96998 * 120.00279 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.88404 * 239.52638 * 14 5 4 40 40 H 1.08997 * 109.88027 * 118.36002 * 14 5 4 41 41 H 0.97000 * 120.00751 * 266.45730 * 17 15 14 42 42 H 1.07992 * 120.15277 * 359.94398 * 21 20 18 43 43 H 1.08000 * 119.97062 * 180.02562 * 22 21 20 44 44 H 1.07998 * 119.69039 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.42147 * 222.92949 * 26 25 24 46 46 H 1.08999 * 109.37226 * 103.08087 * 26 25 24 47 47 H 1.08995 * 109.63749 * 168.77961 * 27 26 25 48 48 H 1.08999 * 109.63475 * 289.39761 * 27 26 25 49 49 H 1.09002 * 109.33803 * 291.59969 * 29 28 27 50 50 H 1.09000 * 109.34174 * 172.08308 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4645 -1.5651 -1.6074 7 1 4.3339 -1.5096 -2.6780 8 6 5.6838 -1.9630 -1.0766 9 7 5.8431 -2.0303 0.2282 10 14 7.0986 -2.4032 -2.2142 11 1 6.6659 -2.2462 -3.6260 12 1 8.2480 -1.5019 -1.9461 13 1 7.5069 -3.8107 -1.9746 14 6 3.4675 -1.2741 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 2.1921 -0.1726 2.0814 17 7 1.2269 -1.9575 1.4960 18 6 1.2809 -2.5470 2.7068 19 8 2.0421 -2.1247 3.5551 20 6 0.4141 -3.7075 3.0033 21 6 -0.4588 -4.1928 2.0299 22 6 -1.2642 -5.2763 2.3133 23 6 -1.2057 -5.8757 3.5572 24 6 -0.3414 -5.3980 4.5318 25 6 0.4698 -4.3195 4.2598 26 6 1.4266 -3.7762 5.2898 27 6 1.0399 -4.2901 6.6778 28 8 0.8513 -5.7076 6.6003 29 6 -0.3212 -6.0785 5.8761 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0700 34 1 1.6704 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 2.1559 -0.1718 -2.0837 37 1 1.4519 -1.6703 -1.4026 38 1 6.6953 -2.3080 0.5991 39 1 4.2427 -0.5996 1.0597 40 1 3.6651 -2.2893 1.0397 41 1 0.6191 -2.2944 0.8192 42 1 -0.5043 -3.7223 1.0589 43 1 -1.9415 -5.6560 1.5626 44 1 -1.8386 -6.7239 3.7726 45 1 1.3867 -2.6869 5.2827 46 1 2.4386 -4.1033 5.0513 47 1 1.8363 -4.0647 7.3869 48 1 0.1134 -3.8145 6.9994 49 1 -1.2041 -5.7835 6.4433 50 1 -0.3309 -7.1591 5.7338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974813169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:17 Heat of formation + Delta-G solvation = -25.571162 kcal Electronic energy + Delta-G solvation = -31358.242883 eV Core-core repulsion = 27351.024644 eV Total energy + Delta-G solvation = -4007.218239 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.75987 -39.46986 -38.02833 -37.27989 -34.01750 -33.24406 -32.79376 -31.76965 -30.70031 -29.80053 -28.00436 -26.82383 -25.71607 -25.63752 -24.28087 -23.64807 -22.87559 -20.63843 -20.35561 -19.63873 -18.81079 -17.52073 -16.70880 -16.59044 -16.19868 -15.89948 -15.62464 -15.38252 -14.95108 -14.52490 -14.40127 -14.16687 -13.89254 -13.82429 -13.42439 -13.30885 -13.13251 -12.81600 -12.49179 -12.40512 -12.07203 -12.00318 -11.97589 -11.75247 -11.67979 -11.52941 -11.38036 -11.08773 -10.99249 -10.78908 -10.70063 -10.38368 -10.22345 -10.00627 -9.95512 -9.86508 -9.64907 -9.17926 -8.95701 -8.74567 -8.61589 -8.39388 -6.81806 -5.67955 -3.03002 0.81416 1.19292 3.00700 3.40935 3.45837 3.48411 3.49134 3.75123 3.85241 4.45655 4.50842 4.60302 4.69762 4.79112 4.91239 4.98241 5.09812 5.13562 5.16965 5.24804 5.27606 5.34092 5.40235 5.54171 5.59233 5.63997 5.69951 5.78361 5.82180 5.88718 5.90139 6.00550 6.14428 6.16434 6.18974 6.19230 6.23065 6.24070 6.36888 6.50923 6.56902 6.59973 6.66387 6.74123 6.77479 6.94326 6.97603 7.56444 7.65699 7.83031 7.93115 8.26908 8.58386 9.23187 9.83931 10.49079 11.42646 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.003337 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.051893 B = 8387.740376 C = 9314.840201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C -0.125 4.125 4 C 0.144 3.856 5 N -0.602 5.602 6 C -0.231 4.231 7 H 0.078 0.922 8 C -0.006 4.006 9 N -0.917 5.917 10 Si 0.909 3.091 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.176 3.824 15 C 0.125 3.875 16 H 0.088 0.912 17 N -0.704 5.704 18 C 0.554 3.446 19 O -0.531 6.531 20 C -0.127 4.127 21 C -0.081 4.081 22 C -0.131 4.131 23 C -0.090 4.090 24 C -0.136 4.136 25 C -0.011 4.011 26 C -0.120 4.120 27 C 0.055 3.945 28 O -0.377 6.377 29 C 0.106 3.894 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.048 0.952 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.041 0.959 37 H 0.014 0.986 38 H 0.252 0.748 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.393 0.607 42 H 0.127 0.873 43 H 0.129 0.871 44 H 0.126 0.874 45 H 0.116 0.884 46 H 0.093 0.907 47 H 0.100 0.900 48 H 0.052 0.948 49 H 0.063 0.937 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.267 -3.105 8.050 20.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.017 3.983 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.096 0.904 8 C -0.203 4.203 9 N -0.564 5.564 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.218 1.218 13 H -0.218 1.218 14 C 0.051 3.949 15 C 0.020 3.980 16 H 0.106 0.894 17 N -0.355 5.355 18 C 0.341 3.659 19 O -0.409 6.409 20 C -0.130 4.130 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.109 4.109 24 C -0.137 4.137 25 C -0.012 4.012 26 C -0.157 4.157 27 C -0.021 4.021 28 O -0.296 6.296 29 C 0.029 3.971 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.230 0.770 42 H 0.144 0.856 43 H 0.147 0.853 44 H 0.144 0.856 45 H 0.134 0.866 46 H 0.112 0.888 47 H 0.118 0.882 48 H 0.071 0.929 49 H 0.081 0.919 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -17.336 -2.983 8.738 19.642 hybrid contribution 0.314 -0.394 -1.318 1.411 sum -17.022 -3.377 7.420 18.874 Atomic orbital electron populations 1.21682 0.94803 1.00944 1.01451 1.22015 0.94371 0.96123 0.96607 1.21593 1.02558 0.93636 1.00525 1.21627 0.87840 0.94466 0.94319 1.44443 1.07602 1.78993 1.01855 1.19061 0.89357 1.38565 0.88910 0.90448 1.24805 0.97820 1.01715 0.95933 1.69968 1.24104 1.53212 1.09148 0.86085 0.82564 0.77760 0.79570 1.20562 1.21756 1.21821 1.21518 0.89582 1.00530 0.83306 1.22498 0.92418 0.86046 0.97021 0.89408 1.45963 1.42533 1.32999 1.13984 1.18125 0.82538 0.82687 0.82503 1.90713 1.39354 1.64795 1.46072 1.19988 0.99734 0.98318 0.94985 1.21315 0.94453 0.95995 0.98263 1.20987 1.00214 0.96661 0.97060 1.21113 0.97536 0.99250 0.92982 1.20217 0.98482 0.97289 0.97696 1.19578 0.94771 0.92915 0.93922 1.21470 0.98666 1.03678 0.91854 1.22827 1.01162 0.80801 0.97335 1.88065 1.44227 1.23258 1.74030 1.21367 0.88577 0.99401 0.87781 0.92786 0.92544 0.93256 0.91145 0.92863 0.93330 0.94068 0.96856 0.93726 0.92806 0.93351 0.77041 0.85561 0.85336 0.85612 0.86593 0.88846 0.88159 0.92935 0.91887 0.87870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.65 8.22 37.16 0.31 -1.34 16 2 C -0.09 -1.46 0.83 -152.36 -0.13 -1.59 16 3 C -0.13 -1.97 8.57 37.16 0.32 -1.65 16 4 C 0.14 2.82 6.14 -2.53 -0.02 2.80 16 5 N -0.60 -14.99 3.38 -170.08 -0.57 -15.57 16 6 C -0.23 -6.38 10.28 -15.06 -0.15 -6.54 16 7 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 8 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 9 N -0.92 -27.51 10.31 55.49 0.57 -26.94 16 10 Si 0.91 22.35 29.55 -169.99 -5.02 17.32 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 13 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 14 C 0.18 4.32 4.79 -3.07 -0.01 4.31 16 15 C 0.12 2.36 2.51 -66.10 -0.17 2.19 16 16 H 0.09 1.71 7.60 -51.93 -0.39 1.31 16 17 N -0.70 -11.80 4.52 -52.97 -0.24 -12.04 16 18 C 0.55 9.78 7.73 -12.32 -0.10 9.68 16 19 O -0.53 -10.78 12.90 5.32 0.07 -10.71 16 20 C -0.13 -1.90 5.88 -104.89 -0.62 -2.52 16 21 C -0.08 -0.99 9.54 -39.23 -0.37 -1.37 16 22 C -0.13 -1.34 10.03 -39.70 -0.40 -1.74 16 23 C -0.09 -0.90 9.66 -39.40 -0.38 -1.28 16 24 C -0.14 -1.62 5.80 -104.65 -0.61 -2.23 16 25 C -0.01 -0.15 5.81 -104.21 -0.61 -0.76 16 26 C -0.12 -1.72 4.54 -27.89 -0.13 -1.85 16 27 C 0.06 0.64 6.85 37.15 0.25 0.89 16 28 O -0.38 -4.74 10.80 -35.23 -0.38 -5.12 16 29 C 0.11 1.06 6.66 36.00 0.24 1.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.57 6.38 -51.93 -0.33 0.24 16 33 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 37 H 0.01 0.26 7.98 -51.92 -0.41 -0.15 16 38 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 39 H 0.05 1.49 7.38 -51.93 -0.38 1.11 16 40 H 0.05 1.38 7.41 -51.93 -0.38 0.99 16 41 H 0.39 5.72 4.92 -40.82 -0.20 5.52 16 42 H 0.13 1.33 6.39 -52.49 -0.34 1.00 16 43 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.78 6.01 -51.93 -0.31 1.47 16 46 H 0.09 1.53 8.09 -51.93 -0.42 1.11 16 47 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.05 0.53 8.07 -51.93 -0.42 0.11 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 387.56 15.07 5.84 5.84 Total: -1.00 -33.06 387.56 -10.17 -43.23 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -7.78 Total: 5.94 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.66 Total: -1.96 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: -0.24 Total: -54.54 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.31 Total: -15.83 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.06 -10.17 -43.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974813169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.658 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds