Wall clock time and date at job start Wed Apr 1 2020 03:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 110.91284 * 2 1 4 4 C 1.54911 * 111.00328 * 236.10494 * 2 1 3 5 5 N 1.47420 * 104.83085 * 204.91617 * 4 2 1 6 6 C 1.36941 * 125.64780 * 204.16724 * 5 4 2 7 7 H 1.07995 * 119.99867 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99836 * 179.97438 * 6 5 4 9 9 N 1.31614 * 120.00525 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99660 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47459 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46949 * 120.00176 * 10 8 6 13 13 H 1.48499 * 109.47039 * 239.99627 * 10 8 6 14 14 C 1.47019 * 108.70526 * 24.12265 * 5 4 2 15 15 C 1.54322 * 107.27272 * 358.94746 * 14 5 4 16 16 H 1.09001 * 110.72041 * 219.26635 * 15 14 5 17 17 N 1.46495 * 110.72350 * 96.16230 * 15 14 5 18 18 C 1.34781 * 119.99336 * 86.45713 * 17 15 14 19 19 O 1.21549 * 120.00488 * 0.02562 * 18 17 15 20 20 C 1.47852 * 119.99610 * 180.02562 * 18 17 15 21 21 C 1.39460 * 120.01049 * 0.04113 * 20 18 17 22 22 C 1.37945 * 119.69415 * 179.97438 * 21 20 18 23 23 C 1.38212 * 120.05707 * 0.06045 * 22 21 20 24 24 C 1.38751 * 120.61046 * 0.02562 * 23 22 21 25 25 C 1.37663 * 119.87175 * 359.81394 * 24 23 22 26 26 C 1.50714 * 121.43003 * 180.31847 * 25 24 23 27 27 C 1.52976 * 109.78225 * 343.01954 * 26 25 24 28 28 O 1.43209 * 108.46626 * 49.08545 * 27 26 25 29 29 C 1.42714 * 113.12898 * 289.40489 * 28 27 26 30 30 H 1.08997 * 109.47234 * 296.09148 * 1 2 3 31 31 H 1.09000 * 109.47085 * 56.09896 * 1 2 3 32 32 H 1.09003 * 109.46697 * 176.09387 * 1 2 3 33 33 H 1.08998 * 109.47215 * 183.90325 * 3 2 1 34 34 H 1.08996 * 109.47432 * 303.90588 * 3 2 1 35 35 H 1.08998 * 109.46880 * 63.90423 * 3 2 1 36 36 H 1.09001 * 110.36689 * 86.07227 * 4 2 1 37 37 H 1.09008 * 110.36513 * 323.74952 * 4 2 1 38 38 H 0.96998 * 120.00279 * 180.02562 * 9 8 6 39 39 H 1.09005 * 109.88404 * 239.52638 * 14 5 4 40 40 H 1.08997 * 109.88027 * 118.36002 * 14 5 4 41 41 H 0.97000 * 120.00751 * 266.45730 * 17 15 14 42 42 H 1.07992 * 120.15277 * 359.94398 * 21 20 18 43 43 H 1.08000 * 119.97062 * 180.02562 * 22 21 20 44 44 H 1.07998 * 119.69039 * 180.02562 * 23 22 21 45 45 H 1.09005 * 109.42147 * 222.92949 * 26 25 24 46 46 H 1.08999 * 109.37226 * 103.08087 * 26 25 24 47 47 H 1.08995 * 109.63749 * 168.77961 * 27 26 25 48 48 H 1.08999 * 109.63475 * 289.39761 * 27 26 25 49 49 H 1.09002 * 109.33803 * 291.59969 * 29 28 27 50 50 H 1.09000 * 109.34174 * 172.08308 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0762 1.4292 0.0000 4 6 2.0853 -0.8065 -1.2004 5 7 3.4271 -1.2430 -0.7735 6 6 4.4645 -1.5651 -1.6074 7 1 4.3339 -1.5096 -2.6780 8 6 5.6838 -1.9630 -1.0766 9 7 5.8431 -2.0303 0.2282 10 14 7.0986 -2.4032 -2.2142 11 1 6.6659 -2.2462 -3.6260 12 1 8.2480 -1.5019 -1.9461 13 1 7.5069 -3.8107 -1.9746 14 6 3.4675 -1.2741 0.6958 15 6 2.0862 -0.8080 1.2021 16 1 2.1921 -0.1726 2.0814 17 7 1.2269 -1.9575 1.4960 18 6 1.2809 -2.5470 2.7068 19 8 2.0421 -2.1247 3.5551 20 6 0.4141 -3.7075 3.0033 21 6 -0.4588 -4.1928 2.0299 22 6 -1.2642 -5.2763 2.3133 23 6 -1.2057 -5.8757 3.5572 24 6 -0.3414 -5.3980 4.5318 25 6 0.4698 -4.3195 4.2598 26 6 1.4266 -3.7762 5.2898 27 6 1.0399 -4.2901 6.6778 28 8 0.8513 -5.7076 6.6003 29 6 -0.3212 -6.0785 5.8761 30 1 -0.3633 0.4520 0.9229 31 1 -0.3633 0.5732 -0.8530 32 1 -0.3633 -1.0253 -0.0700 33 1 3.1636 1.4026 -0.0700 34 1 1.6704 1.9732 -0.8529 35 1 1.7836 1.9299 0.9229 36 1 2.1559 -0.1718 -2.0837 37 1 1.4519 -1.6703 -1.4026 38 1 6.6953 -2.3080 0.5991 39 1 4.2427 -0.5996 1.0597 40 1 3.6651 -2.2893 1.0397 41 1 0.6191 -2.2944 0.8192 42 1 -0.5043 -3.7223 1.0589 43 1 -1.9415 -5.6560 1.5626 44 1 -1.8386 -6.7239 3.7726 45 1 1.3867 -2.6869 5.2827 46 1 2.4386 -4.1033 5.0513 47 1 1.8363 -4.0647 7.3869 48 1 0.1134 -3.8145 6.9994 49 1 -1.2041 -5.7835 6.4433 50 1 -0.3309 -7.1591 5.7338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974813169.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:21:16 Heat of formation + Delta-G solvation = -46.878654 kcal Electronic energy + Delta-G solvation = -31359.166845 eV Core-core repulsion = 27351.024644 eV Total energy + Delta-G solvation = -4008.142202 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.88332 -40.78131 -39.38130 -38.31628 -35.78595 -34.72475 -33.82699 -32.76070 -32.62731 -30.83813 -29.61493 -28.07738 -27.43837 -26.56890 -25.67424 -24.70319 -24.25980 -22.23480 -21.65403 -20.85823 -20.20791 -18.70798 -18.67425 -17.68443 -17.22628 -17.03949 -16.80087 -16.71417 -16.22415 -15.94423 -15.77130 -15.59963 -15.46949 -15.02536 -14.78223 -14.43980 -14.29689 -14.00316 -13.84738 -13.59906 -13.46116 -13.30182 -13.17625 -13.00014 -12.90966 -12.83041 -12.75993 -12.71003 -12.59380 -12.41866 -12.08653 -11.87126 -11.75576 -11.63045 -11.52597 -11.33293 -11.02057 -10.78650 -10.40502 -10.11731 -9.75094 -9.63856 -8.91343 -7.85423 -5.22448 -0.17622 0.28442 1.41972 1.43341 1.53783 1.83506 2.15376 2.47205 2.76458 2.91617 3.33108 3.45533 3.61478 3.63680 3.69453 3.73475 3.91297 3.94435 4.04134 4.05183 4.19656 4.31281 4.37981 4.39624 4.49960 4.50427 4.55998 4.64737 4.78082 4.79666 4.81211 4.84108 4.86129 4.92951 4.94247 5.02830 5.10932 5.11649 5.15045 5.28785 5.30571 5.33625 5.37850 5.44301 5.53803 5.54395 5.69902 5.73831 5.88950 6.11595 6.15609 6.54825 7.06021 7.23153 7.76112 8.40282 9.23947 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011683 B = 0.003337 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.051893 B = 8387.740376 C = 9314.840201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.074 4.074 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.236 4.236 7 H 0.089 0.911 8 C -0.070 4.070 9 N -0.955 5.955 10 Si 0.977 3.023 11 H -0.259 1.259 12 H -0.294 1.294 13 H -0.297 1.297 14 C 0.196 3.804 15 C 0.138 3.862 16 H 0.077 0.923 17 N -0.695 5.695 18 C 0.546 3.454 19 O -0.571 6.571 20 C -0.155 4.155 21 C -0.086 4.086 22 C -0.124 4.124 23 C -0.078 4.078 24 C -0.142 4.142 25 C -0.039 4.039 26 C -0.116 4.116 27 C 0.062 3.938 28 O -0.396 6.396 29 C 0.099 3.901 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.029 0.971 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.050 0.950 37 H 0.030 0.970 38 H 0.242 0.758 39 H 0.005 0.995 40 H -0.004 1.004 41 H 0.407 0.593 42 H 0.141 0.859 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.095 0.905 46 H 0.055 0.945 47 H 0.108 0.892 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.603 -4.297 6.613 23.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.075 4.075 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.346 5.346 6 C -0.365 4.365 7 H 0.106 0.894 8 C -0.263 4.263 9 N -0.604 5.604 10 Si 0.805 3.195 11 H -0.183 1.183 12 H -0.222 1.222 13 H -0.224 1.224 14 C 0.069 3.931 15 C 0.033 3.967 16 H 0.095 0.905 17 N -0.346 5.346 18 C 0.336 3.664 19 O -0.452 6.452 20 C -0.158 4.158 21 C -0.104 4.104 22 C -0.142 4.142 23 C -0.096 4.096 24 C -0.143 4.143 25 C -0.040 4.040 26 C -0.153 4.153 27 C -0.014 4.014 28 O -0.315 6.315 29 C 0.023 3.977 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.048 0.952 38 H 0.052 0.948 39 H 0.023 0.977 40 H 0.014 0.986 41 H 0.245 0.755 42 H 0.159 0.841 43 H 0.184 0.816 44 H 0.185 0.815 45 H 0.114 0.886 46 H 0.074 0.926 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.107 0.893 50 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -21.740 -4.172 7.251 23.294 hybrid contribution 1.608 -0.073 -0.890 1.839 sum -20.132 -4.245 6.362 21.536 Atomic orbital electron populations 1.21659 0.90740 1.02516 1.03227 1.21992 0.97338 0.95302 0.92901 1.21590 0.99991 0.93794 1.02721 1.21905 0.85430 0.95453 0.95897 1.44694 1.09334 1.78893 1.01714 1.19532 0.90155 1.36970 0.89824 0.89357 1.25686 1.00685 1.02673 0.97234 1.70252 1.23986 1.54958 1.11208 0.85027 0.79090 0.76647 0.78703 1.18280 1.22163 1.22447 1.21047 0.91963 0.96387 0.83687 1.22095 0.90148 0.86866 0.97641 0.90459 1.45769 1.42117 1.32455 1.14292 1.18776 0.82347 0.83199 0.82104 1.90695 1.41156 1.66069 1.47324 1.19880 1.01130 0.98284 0.96544 1.21556 0.94015 0.96765 0.98081 1.21451 0.99511 0.95214 0.97999 1.21616 0.96428 0.99488 0.92028 1.20536 0.98109 0.96333 0.99278 1.19720 0.95996 0.94556 0.93733 1.21287 0.97175 1.02551 0.94322 1.22790 1.02348 0.80794 0.95473 1.88034 1.45773 1.23299 1.74406 1.21697 0.88568 1.00534 0.86873 0.91649 0.90030 0.91962 0.95193 0.90116 0.91577 0.93138 0.95209 0.94837 0.97724 0.98603 0.75469 0.84138 0.81607 0.81461 0.88648 0.92642 0.87442 0.90945 0.89301 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 8.22 71.98 0.59 -2.07 16 2 C -0.07 -2.33 0.83 -50.79 -0.04 -2.37 16 3 C -0.12 -3.76 8.57 71.98 0.62 -3.15 16 4 C 0.14 5.26 6.14 86.86 0.53 5.80 16 5 N -0.62 -31.93 3.38 -692.00 -2.34 -34.27 16 6 C -0.24 -13.37 10.28 84.03 0.86 -12.50 16 7 H 0.09 4.70 7.83 -2.91 -0.02 4.68 16 8 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 9 N -0.95 -61.37 10.31 21.65 0.22 -61.14 16 10 Si 0.98 47.44 29.55 68.60 2.03 49.47 16 11 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 12 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 13 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 14 C 0.20 10.36 4.79 86.73 0.42 10.78 16 15 C 0.14 5.46 2.51 46.18 0.12 5.58 16 16 H 0.08 3.22 7.60 -2.39 -0.02 3.20 16 17 N -0.69 -23.90 4.52 -439.78 -1.99 -25.88 16 18 C 0.55 20.51 7.73 86.79 0.67 21.18 16 19 O -0.57 -25.64 12.90 -3.87 -0.05 -25.69 16 20 C -0.16 -4.73 5.88 -20.04 -0.12 -4.85 16 21 C -0.09 -1.92 9.54 22.49 0.21 -1.70 16 22 C -0.12 -2.02 10.03 22.19 0.22 -1.79 16 23 C -0.08 -1.22 9.66 22.39 0.22 -1.00 16 24 C -0.14 -3.08 5.80 -19.88 -0.12 -3.20 16 25 C -0.04 -1.14 5.81 -19.60 -0.11 -1.25 16 26 C -0.12 -3.65 4.54 29.84 0.14 -3.51 16 27 C 0.06 1.47 6.85 71.97 0.49 1.96 16 28 O -0.40 -9.64 10.80 -148.98 -1.61 -11.25 16 29 C 0.10 1.73 6.66 71.23 0.47 2.20 16 30 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.41 16 32 H 0.06 1.19 6.38 -2.39 -0.02 1.18 16 33 H 0.03 1.14 7.91 -2.39 -0.02 1.12 16 34 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.05 1.85 8.05 -2.39 -0.02 1.83 16 37 H 0.03 1.07 7.98 -2.38 -0.02 1.05 16 38 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.00 0.28 7.38 -2.38 -0.02 0.27 16 40 H 0.00 -0.27 7.41 -2.39 -0.02 -0.28 16 41 H 0.41 11.45 4.92 -92.71 -0.46 11.00 16 42 H 0.14 2.60 6.39 -2.91 -0.02 2.58 16 43 H 0.17 1.49 8.06 -2.91 -0.02 1.47 16 44 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 45 H 0.10 3.31 6.01 -2.38 -0.01 3.29 16 46 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 47 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 48 H 0.07 1.40 8.07 -2.39 -0.02 1.38 16 49 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -81.13 387.56 2.40 -78.73 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.49 Total: 23.64 kcal Atomic # 6 Polarization: 0.76 SS G_CDS: 5.64 Total: 6.40 kcal Atomic # 7 Polarization: -117.20 SS G_CDS: -4.10 Total: -121.30 kcal Atomic # 8 Polarization: -35.27 SS G_CDS: -1.66 Total: -36.93 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -81.13 2.40 -78.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974813169.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.850 kcal (2) G-P(sol) polarization free energy of solvation -81.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds