Wall clock time and date at job start Wed Apr 1 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34784 * 119.99748 * 2 1 4 4 O 1.21283 * 120.00232 * 183.79156 * 3 2 1 5 5 C 1.50706 * 119.99729 * 3.79242 * 3 2 1 6 6 C 1.53000 * 109.43017 * 212.00534 * 5 3 2 7 7 C 1.53072 * 109.43342 * 92.13810 * 5 3 2 8 8 C 1.53401 * 108.31316 * 288.10843 * 7 5 3 9 9 O 1.42829 * 108.37472 * 295.31573 * 8 7 5 10 10 C 1.35844 * 117.85108 * 49.25736 * 9 8 7 11 11 C 1.39144 * 118.50288 * 162.88814 * 10 9 8 12 12 C 1.37971 * 120.21393 * 179.53765 * 11 10 9 13 13 C 1.38290 * 119.95682 * 0.02562 * 12 11 10 14 14 C 1.38100 * 119.98660 * 0.09753 * 13 12 11 15 15 C 1.38371 * 121.80000 * 342.59971 * 10 9 8 16 16 C 1.46497 * 120.00603 * 180.02562 * 2 1 3 17 17 C 1.53775 * 113.61383 * 37.48948 * 16 2 1 18 18 C 1.53777 * 87.08352 * 220.02177 * 17 16 2 19 19 N 1.46496 * 113.61924 * 270.88697 * 18 17 16 20 20 C 1.36941 * 120.00076 * 252.49650 * 19 18 17 21 21 H 1.08001 * 119.99974 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99970 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99775 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00260 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47028 * 90.00076 * 24 22 20 26 26 H 1.48498 * 109.47083 * 210.00003 * 24 22 20 27 27 H 1.48504 * 109.46730 * 330.00038 * 24 22 20 28 28 C 1.53781 * 113.60834 * 299.99699 * 16 2 1 29 29 H 1.08996 * 109.47227 * 65.33741 * 1 2 3 30 30 H 1.08998 * 109.46211 * 185.33447 * 1 2 3 31 31 H 1.08998 * 109.46753 * 305.33269 * 1 2 3 32 32 H 1.09009 * 109.46656 * 179.91411 * 6 5 3 33 33 H 1.08998 * 109.47376 * 299.90917 * 6 5 3 34 34 H 1.08995 * 109.47512 * 59.91242 * 6 5 3 35 35 H 1.08994 * 109.69397 * 47.81411 * 7 5 3 36 36 H 1.09002 * 109.69261 * 168.36262 * 7 5 3 37 37 H 1.08996 * 109.68349 * 55.03214 * 8 7 5 38 38 H 1.08997 * 109.68304 * 175.59923 * 8 7 5 39 39 H 1.07998 * 119.89588 * 359.81752 * 11 10 9 40 40 H 1.08000 * 120.01707 * 179.97438 * 12 11 10 41 41 H 1.08000 * 120.00467 * 180.08468 * 13 12 11 42 42 H 1.07995 * 119.84363 * 179.97438 * 14 13 12 43 43 H 1.08998 * 112.85411 * 168.80034 * 16 2 1 44 44 H 1.09000 * 113.61511 * 334.57796 * 17 16 2 45 45 H 1.09007 * 113.61096 * 105.47293 * 17 16 2 46 46 H 1.09001 * 113.69020 * 139.98824 * 18 17 16 47 47 H 0.97002 * 119.99814 * 72.49364 * 19 18 17 48 48 H 0.97005 * 119.99727 * 179.97438 * 23 22 20 49 49 H 1.09009 * 113.61460 * 254.52563 * 28 16 2 50 50 H 1.09001 * 113.61531 * 25.43330 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3497 1.1685 -0.0695 5 6 1.3877 2.4709 0.0863 6 6 2.1486 3.5490 -0.6880 7 6 1.2631 2.8908 1.5531 8 6 0.2565 1.9573 2.2377 9 8 -1.0256 2.1638 1.6431 10 6 -1.1059 2.1497 0.2871 11 6 -2.3556 1.9857 -0.3023 12 6 -2.4793 1.9756 -1.6765 13 6 -1.3583 2.1283 -2.4718 14 6 -0.1160 2.2888 -1.8902 15 6 0.0143 2.2991 -0.5113 16 6 2.1976 -1.2686 -0.0006 17 6 1.5375 -2.3608 -0.8586 18 6 1.9132 -3.3525 0.2550 19 7 3.2400 -3.9501 0.0857 20 6 3.3573 -5.2613 -0.2915 21 1 2.4716 -5.8548 -0.4646 22 6 4.6144 -5.8274 -0.4525 23 7 4.7271 -7.0876 -0.8155 24 14 6.1462 -4.8009 -0.1539 25 1 6.5498 -4.9167 1.2705 26 1 7.2473 -5.2907 -1.0216 27 1 5.8593 -3.3792 -0.4731 28 6 1.8956 -2.1548 1.2194 29 1 -0.3633 0.4288 -0.9339 30 1 -0.3632 -1.0233 0.0955 31 1 -0.3633 0.5943 0.8384 32 1 1.6050 4.4919 -0.6272 33 1 3.1417 3.6738 -0.2564 34 1 2.2412 3.2496 -1.7319 35 1 2.2333 2.8074 2.0427 36 1 0.9093 3.9201 1.6117 37 1 0.5632 0.9208 2.0981 38 1 0.2086 2.1865 3.3023 39 1 -3.2323 1.8704 0.3177 40 1 -3.4507 1.8476 -2.1306 41 1 -1.4543 2.1219 -3.5475 42 1 0.7579 2.4074 -2.5135 43 1 3.2626 -1.1424 -0.1956 44 1 0.4625 -2.2291 -0.9817 45 1 2.0529 -2.5466 -1.8010 46 1 1.1394 -4.0916 0.4626 47 1 4.0354 -3.4170 0.2407 48 1 5.6056 -7.4831 -0.9284 49 1 2.7000 -2.1745 1.9547 50 1 0.9184 -1.9669 1.6644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999710151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:17 Heat of formation + Delta-G solvation = 43.959259 kcal Electronic energy + Delta-G solvation = -32211.085679 eV Core-core repulsion = 28206.882505 eV Total energy + Delta-G solvation = -4004.203174 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.65933 -39.71220 -38.39037 -37.98999 -35.43253 -34.88657 -32.92450 -31.21008 -30.62492 -30.40015 -29.13691 -27.00563 -25.54939 -25.22198 -24.44538 -23.74383 -22.84631 -22.08568 -21.33233 -18.98473 -18.48532 -18.37697 -17.75896 -17.27836 -16.82060 -16.61519 -16.30216 -15.24789 -15.14960 -14.87883 -14.58056 -14.41561 -14.26940 -14.10700 -13.77875 -13.53940 -13.44395 -13.06179 -12.77252 -12.63903 -12.51457 -12.30166 -12.22638 -12.14576 -11.98026 -11.94883 -11.83437 -11.63988 -11.32606 -11.05581 -10.94190 -10.80161 -10.70189 -10.34292 -10.31120 -9.94083 -9.74127 -9.60435 -8.98730 -8.94277 -8.46114 -8.27717 -7.33394 -5.81118 -3.17901 0.92678 1.09446 2.51121 2.86701 2.98617 3.36886 3.37780 3.42529 3.45535 4.04012 4.17296 4.25558 4.41719 4.46419 4.56678 4.78525 4.79866 4.91117 4.94588 4.98898 5.02697 5.07854 5.11711 5.13841 5.16305 5.18489 5.33577 5.39730 5.42735 5.44275 5.53330 5.57679 5.65064 5.69970 5.72787 5.74218 5.84365 5.98044 5.98560 6.08282 6.13174 6.23863 6.25195 6.41854 6.43305 6.54511 6.65227 6.85993 7.03304 7.42334 7.95320 8.13211 8.38187 9.15446 9.88013 10.06514 11.36694 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.003187 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.298537 B = 8783.558188 C = 9242.699441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.591 5.591 3 C 0.522 3.478 4 O -0.535 6.535 5 C -0.034 4.034 6 C -0.126 4.126 7 C -0.143 4.143 8 C 0.045 3.955 9 O -0.313 6.313 10 C 0.143 3.857 11 C -0.156 4.156 12 C -0.081 4.081 13 C -0.151 4.151 14 C -0.082 4.082 15 C -0.149 4.149 16 C 0.118 3.882 17 C -0.180 4.180 18 C 0.179 3.821 19 N -0.729 5.729 20 C -0.249 4.249 21 H 0.093 0.907 22 C 0.009 3.991 23 N -0.931 5.931 24 Si 0.881 3.119 25 H -0.283 1.283 26 H -0.289 1.289 27 H -0.275 1.275 28 C -0.169 4.169 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.133 0.867 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.126 0.874 43 H 0.115 0.885 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.363 0.637 48 H 0.260 0.740 49 H 0.070 0.930 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.740 24.975 2.418 29.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.322 5.322 3 C 0.308 3.692 4 O -0.412 6.412 5 C -0.037 4.037 6 C -0.183 4.183 7 C -0.181 4.181 8 C -0.030 4.030 9 O -0.228 6.228 10 C 0.099 3.901 11 C -0.175 4.175 12 C -0.099 4.099 13 C -0.170 4.170 14 C -0.100 4.100 15 C -0.150 4.150 16 C 0.016 3.984 17 C -0.222 4.222 18 C 0.066 3.934 19 N -0.369 5.369 20 C -0.379 4.379 21 H 0.110 0.890 22 C -0.187 4.187 23 N -0.578 5.578 24 Si 0.711 3.289 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.202 1.202 28 C -0.210 4.210 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.133 0.867 39 H 0.150 0.850 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.144 0.856 43 H 0.133 0.867 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.196 0.804 48 H 0.071 0.929 49 H 0.088 0.912 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.247 24.701 2.453 29.131 hybrid contribution 1.355 0.589 0.016 1.477 sum -13.893 25.290 2.469 28.961 Atomic orbital electron populations 1.23446 0.80306 1.03964 1.03006 1.47945 1.06590 1.05846 1.71811 1.20355 0.87665 0.84859 0.76282 1.90706 1.13766 1.87014 1.49715 1.19666 0.92172 0.94934 0.96946 1.21728 1.00336 0.96228 1.00026 1.22265 1.01562 1.00964 0.93306 1.23250 0.81332 1.00277 0.98093 1.86073 1.32565 1.87007 1.17122 1.18443 0.93591 0.95692 0.82398 1.20582 0.95534 1.06375 0.95004 1.20967 0.98952 0.97449 0.92553 1.21028 0.92272 1.03463 1.00199 1.20938 0.98143 0.97722 0.93170 1.19511 0.93482 1.07499 0.94538 1.22819 0.97657 0.80055 0.97867 1.24293 0.99848 0.97157 1.00898 1.20839 0.89169 0.91442 0.91927 1.42555 1.01143 1.10825 1.82400 1.19091 0.94434 0.85413 1.38950 0.88955 1.24659 0.97084 0.95829 1.01162 1.69700 1.23125 1.11690 1.53273 0.86606 0.84226 0.80084 0.78024 1.20922 1.21556 1.20151 1.23994 1.01677 0.97760 0.97535 0.90327 0.90522 0.90327 0.91537 0.90745 0.91758 0.88808 0.89027 0.90312 0.86654 0.84953 0.85223 0.85647 0.85632 0.86735 0.90494 0.90748 0.90503 0.80357 0.92945 0.91167 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 6.51 59.85 0.39 0.78 16 2 N -0.59 -8.16 2.69 -173.01 -0.47 -8.63 16 3 C 0.52 7.46 5.92 -10.98 -0.07 7.39 16 4 O -0.54 -9.66 15.69 5.55 0.09 -9.57 16 5 C -0.03 -0.36 0.60 -156.74 -0.09 -0.46 16 6 C -0.13 -1.22 7.61 37.16 0.28 -0.94 16 7 C -0.14 -1.26 4.93 -26.49 -0.13 -1.39 16 8 C 0.04 0.39 6.42 37.37 0.24 0.63 16 9 O -0.31 -3.01 9.79 -19.25 -0.19 -3.20 16 10 C 0.14 1.38 3.73 -39.20 -0.15 1.23 16 11 C -0.16 -1.30 9.55 -39.34 -0.38 -1.68 16 12 C -0.08 -0.60 9.88 -39.66 -0.39 -0.99 16 13 C -0.15 -1.22 9.64 -39.61 -0.38 -1.60 16 14 C -0.08 -0.77 7.76 -39.53 -0.31 -1.08 16 15 C -0.15 -1.49 2.58 -104.44 -0.27 -1.76 16 16 C 0.12 1.93 4.09 -67.12 -0.27 1.66 16 17 C -0.18 -3.02 7.25 -25.92 -0.19 -3.21 16 18 C 0.18 3.38 4.56 -67.12 -0.31 3.07 16 19 N -0.73 -17.29 5.11 -52.64 -0.27 -17.56 16 20 C -0.25 -7.01 10.45 -15.06 -0.16 -7.16 16 21 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 22 C 0.01 0.26 5.50 -17.43 -0.10 0.16 16 23 N -0.93 -29.21 13.97 55.49 0.78 -28.44 16 24 Si 0.88 22.46 27.74 -169.99 -4.71 17.75 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.77 6.52 56.52 0.37 -6.40 16 28 C -0.17 -2.67 7.34 -25.92 -0.19 -2.86 16 29 H 0.08 0.88 3.68 -51.93 -0.19 0.69 16 30 H 0.08 0.86 5.70 -51.93 -0.30 0.57 16 31 H 0.08 0.83 1.85 -52.03 -0.10 0.73 16 32 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.77 7.85 -51.93 -0.41 0.37 16 34 H 0.06 0.64 6.52 -51.93 -0.34 0.30 16 35 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.09 0.69 8.10 -51.93 -0.42 0.27 16 37 H 0.08 0.78 5.32 -51.93 -0.28 0.51 16 38 H 0.12 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 1.17 6.47 -52.49 -0.34 0.83 16 43 H 0.11 2.21 7.21 -51.93 -0.37 1.84 16 44 H 0.08 1.11 6.15 -51.93 -0.32 0.79 16 45 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 46 H 0.08 1.45 8.10 -51.93 -0.42 1.03 16 47 H 0.36 8.65 5.76 -40.82 -0.24 8.41 16 48 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 49 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 50 H 0.08 1.08 7.39 -51.93 -0.38 0.69 16 LS Contribution 371.35 15.07 5.60 5.60 Total: -1.00 -33.30 371.35 -8.71 -42.01 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -7.07 Total: 10.25 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.46 Total: -8.20 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.04 Total: -54.63 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: -0.10 Total: -12.77 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.75 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.30 -8.71 -42.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.967 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds