Wall clock time and date at job start Wed Apr 1 2020 03:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34784 * 119.99748 * 2 1 4 4 O 1.21283 * 120.00232 * 183.79156 * 3 2 1 5 5 C 1.50706 * 119.99729 * 3.79242 * 3 2 1 6 6 C 1.53000 * 109.43017 * 212.00534 * 5 3 2 7 7 C 1.53072 * 109.43342 * 92.13810 * 5 3 2 8 8 C 1.53401 * 108.31316 * 288.10843 * 7 5 3 9 9 O 1.42829 * 108.37472 * 295.31573 * 8 7 5 10 10 C 1.35844 * 117.85108 * 49.25736 * 9 8 7 11 11 C 1.39144 * 118.50288 * 162.88814 * 10 9 8 12 12 C 1.37971 * 120.21393 * 179.53765 * 11 10 9 13 13 C 1.38290 * 119.95682 * 0.02562 * 12 11 10 14 14 C 1.38100 * 119.98660 * 0.09753 * 13 12 11 15 15 C 1.38371 * 121.80000 * 342.59971 * 10 9 8 16 16 C 1.46497 * 120.00603 * 180.02562 * 2 1 3 17 17 C 1.53775 * 113.61383 * 37.48948 * 16 2 1 18 18 C 1.53777 * 87.08352 * 220.02177 * 17 16 2 19 19 N 1.46496 * 113.61924 * 270.88697 * 18 17 16 20 20 C 1.36941 * 120.00076 * 252.49650 * 19 18 17 21 21 H 1.08001 * 119.99974 * 0.02562 * 20 19 18 22 22 C 1.38807 * 119.99970 * 179.97438 * 20 19 18 23 23 N 1.31623 * 119.99775 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00260 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47028 * 90.00076 * 24 22 20 26 26 H 1.48498 * 109.47083 * 210.00003 * 24 22 20 27 27 H 1.48504 * 109.46730 * 330.00038 * 24 22 20 28 28 C 1.53781 * 113.60834 * 299.99699 * 16 2 1 29 29 H 1.08996 * 109.47227 * 65.33741 * 1 2 3 30 30 H 1.08998 * 109.46211 * 185.33447 * 1 2 3 31 31 H 1.08998 * 109.46753 * 305.33269 * 1 2 3 32 32 H 1.09009 * 109.46656 * 179.91411 * 6 5 3 33 33 H 1.08998 * 109.47376 * 299.90917 * 6 5 3 34 34 H 1.08995 * 109.47512 * 59.91242 * 6 5 3 35 35 H 1.08994 * 109.69397 * 47.81411 * 7 5 3 36 36 H 1.09002 * 109.69261 * 168.36262 * 7 5 3 37 37 H 1.08996 * 109.68349 * 55.03214 * 8 7 5 38 38 H 1.08997 * 109.68304 * 175.59923 * 8 7 5 39 39 H 1.07998 * 119.89588 * 359.81752 * 11 10 9 40 40 H 1.08000 * 120.01707 * 179.97438 * 12 11 10 41 41 H 1.08000 * 120.00467 * 180.08468 * 13 12 11 42 42 H 1.07995 * 119.84363 * 179.97438 * 14 13 12 43 43 H 1.08998 * 112.85411 * 168.80034 * 16 2 1 44 44 H 1.09000 * 113.61511 * 334.57796 * 17 16 2 45 45 H 1.09007 * 113.61096 * 105.47293 * 17 16 2 46 46 H 1.09001 * 113.69020 * 139.98824 * 18 17 16 47 47 H 0.97002 * 119.99814 * 72.49364 * 19 18 17 48 48 H 0.97005 * 119.99727 * 179.97438 * 23 22 20 49 49 H 1.09009 * 113.61460 * 254.52563 * 28 16 2 50 50 H 1.09001 * 113.61531 * 25.43330 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3497 1.1685 -0.0695 5 6 1.3877 2.4709 0.0863 6 6 2.1486 3.5490 -0.6880 7 6 1.2631 2.8908 1.5531 8 6 0.2565 1.9573 2.2377 9 8 -1.0256 2.1638 1.6431 10 6 -1.1059 2.1497 0.2871 11 6 -2.3556 1.9857 -0.3023 12 6 -2.4793 1.9756 -1.6765 13 6 -1.3583 2.1283 -2.4718 14 6 -0.1160 2.2888 -1.8902 15 6 0.0143 2.2991 -0.5113 16 6 2.1976 -1.2686 -0.0006 17 6 1.5375 -2.3608 -0.8586 18 6 1.9132 -3.3525 0.2550 19 7 3.2400 -3.9501 0.0857 20 6 3.3573 -5.2613 -0.2915 21 1 2.4716 -5.8548 -0.4646 22 6 4.6144 -5.8274 -0.4525 23 7 4.7271 -7.0876 -0.8155 24 14 6.1462 -4.8009 -0.1539 25 1 6.5498 -4.9167 1.2705 26 1 7.2473 -5.2907 -1.0216 27 1 5.8593 -3.3792 -0.4731 28 6 1.8956 -2.1548 1.2194 29 1 -0.3633 0.4288 -0.9339 30 1 -0.3632 -1.0233 0.0955 31 1 -0.3633 0.5943 0.8384 32 1 1.6050 4.4919 -0.6272 33 1 3.1417 3.6738 -0.2564 34 1 2.2412 3.2496 -1.7319 35 1 2.2333 2.8074 2.0427 36 1 0.9093 3.9201 1.6117 37 1 0.5632 0.9208 2.0981 38 1 0.2086 2.1865 3.3023 39 1 -3.2323 1.8704 0.3177 40 1 -3.4507 1.8476 -2.1306 41 1 -1.4543 2.1219 -3.5475 42 1 0.7579 2.4074 -2.5135 43 1 3.2626 -1.1424 -0.1956 44 1 0.4625 -2.2291 -0.9817 45 1 2.0529 -2.5466 -1.8010 46 1 1.1394 -4.0916 0.4626 47 1 4.0354 -3.4170 0.2407 48 1 5.6056 -7.4831 -0.9284 49 1 2.7000 -2.1745 1.9547 50 1 0.9184 -1.9669 1.6644 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999710151.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:16 Heat of formation + Delta-G solvation = 23.209645 kcal Electronic energy + Delta-G solvation = -32211.985450 eV Core-core repulsion = 28206.882505 eV Total energy + Delta-G solvation = -4005.102945 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.45413 -40.86443 -39.66059 -38.63093 -36.34800 -36.27629 -34.72843 -32.45501 -31.81930 -31.25972 -29.91468 -27.97126 -26.90512 -26.54806 -25.37902 -24.96995 -24.02564 -22.95439 -22.38478 -20.27920 -19.73827 -19.58670 -19.05035 -18.24995 -17.73605 -17.56072 -17.19685 -16.66547 -16.25365 -16.06429 -15.87309 -15.47169 -15.10005 -15.05762 -14.78789 -14.70338 -14.47891 -14.35393 -14.23417 -13.84237 -13.74803 -13.45919 -13.40741 -13.11897 -12.96922 -12.94317 -12.74579 -12.60431 -12.52722 -12.42466 -12.25041 -12.00244 -11.87020 -11.80421 -11.71294 -11.47189 -11.27340 -11.01489 -10.87979 -9.75701 -9.54896 -9.37601 -8.96859 -8.07645 -5.41209 0.27491 0.44858 1.33999 1.34982 1.41631 1.42591 1.89316 2.23667 2.42321 2.71119 3.22148 3.31169 3.36812 3.42528 3.47684 3.64148 3.71532 3.74068 3.74715 4.07833 4.10025 4.14005 4.19075 4.24827 4.25091 4.37276 4.43831 4.49412 4.52798 4.56670 4.66644 4.70406 4.71617 4.74871 4.78175 4.88785 4.90370 4.95090 5.00028 5.06011 5.10177 5.12697 5.20574 5.33211 5.50022 5.55812 5.62787 5.74490 5.82761 6.17703 6.31182 6.37617 7.01365 7.02681 7.78034 7.94889 9.13507 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.003187 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.298537 B = 8783.558188 C = 9242.699441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.587 5.587 3 C 0.517 3.483 4 O -0.581 6.581 5 C -0.029 4.029 6 C -0.124 4.124 7 C -0.141 4.141 8 C 0.044 3.956 9 O -0.316 6.316 10 C 0.133 3.867 11 C -0.159 4.159 12 C -0.075 4.075 13 C -0.153 4.153 14 C -0.095 4.095 15 C -0.160 4.160 16 C 0.122 3.878 17 C -0.165 4.165 18 C 0.159 3.841 19 N -0.737 5.737 20 C -0.232 4.232 21 H 0.066 0.934 22 C -0.056 4.056 23 N -0.979 5.979 24 Si 0.945 3.055 25 H -0.276 1.276 26 H -0.293 1.293 27 H -0.265 1.265 28 C -0.147 4.147 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.156 0.844 41 H 0.141 0.859 42 H 0.119 0.881 43 H 0.081 0.919 44 H 0.107 0.893 45 H 0.049 0.951 46 H 0.078 0.922 47 H 0.363 0.637 48 H 0.259 0.741 49 H 0.063 0.937 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.158 27.484 3.205 33.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.317 5.317 3 C 0.306 3.694 4 O -0.461 6.461 5 C -0.032 4.032 6 C -0.181 4.181 7 C -0.179 4.179 8 C -0.030 4.030 9 O -0.231 6.231 10 C 0.088 3.912 11 C -0.177 4.177 12 C -0.093 4.093 13 C -0.171 4.171 14 C -0.113 4.113 15 C -0.161 4.161 16 C 0.018 3.982 17 C -0.206 4.206 18 C 0.048 3.952 19 N -0.377 5.377 20 C -0.362 4.362 21 H 0.084 0.916 22 C -0.248 4.248 23 N -0.629 5.629 24 Si 0.773 3.227 25 H -0.202 1.202 26 H -0.219 1.219 27 H -0.190 1.190 28 C -0.186 4.186 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.159 0.841 39 H 0.165 0.835 40 H 0.174 0.826 41 H 0.159 0.841 42 H 0.137 0.863 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.196 0.804 48 H 0.068 0.932 49 H 0.082 0.918 50 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.735 27.264 3.254 32.687 hybrid contribution 1.939 -0.157 -0.283 1.966 sum -15.796 27.107 2.971 31.514 Atomic orbital electron populations 1.23633 0.78408 1.04602 1.04055 1.47931 1.07556 1.04846 1.71355 1.21077 0.87324 0.86045 0.74975 1.90680 1.15914 1.87753 1.51785 1.19645 0.92330 0.92726 0.98525 1.21724 0.99987 0.97003 0.99397 1.22299 1.01700 1.02025 0.91874 1.23344 0.80915 0.99324 0.99427 1.86083 1.32847 1.87032 1.17103 1.18607 0.93904 0.96218 0.82443 1.20861 0.95517 1.05694 0.95621 1.21300 0.99865 0.95898 0.92235 1.21276 0.91917 1.02725 1.01233 1.21026 0.98721 0.98395 0.93122 1.19433 0.93034 1.08859 0.94766 1.22459 0.96266 0.81460 0.98003 1.24134 1.01430 0.96154 0.98858 1.21135 0.87034 0.92605 0.94380 1.42560 1.03188 1.09379 1.82622 1.19091 0.93430 0.86887 1.36831 0.91557 1.25369 1.00221 0.96945 1.02218 1.69853 1.23653 1.13621 1.55746 0.85561 0.80237 0.78909 0.77972 1.20156 1.21949 1.19000 1.23839 1.03245 0.94977 0.96582 0.89811 0.89990 0.88899 0.89395 0.91918 0.92466 0.89165 0.87303 0.91697 0.84126 0.83473 0.82590 0.84114 0.86276 0.90045 0.87452 0.93218 0.90355 0.80421 0.93221 0.91798 0.86833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 6.51 127.77 0.83 1.51 16 2 N -0.59 -15.52 2.69 -819.65 -2.21 -17.73 16 3 C 0.52 14.58 5.92 87.66 0.52 15.10 16 4 O -0.58 -21.46 15.69 -3.04 -0.05 -21.51 16 5 C -0.03 -0.59 0.60 -53.63 -0.03 -0.62 16 6 C -0.12 -2.32 7.61 71.98 0.55 -1.78 16 7 C -0.14 -2.22 4.93 30.75 0.15 -2.07 16 8 C 0.04 0.64 6.42 72.12 0.46 1.10 16 9 O -0.32 -5.09 9.79 -91.79 -0.90 -5.99 16 10 C 0.13 2.16 3.73 22.52 0.08 2.25 16 11 C -0.16 -2.08 9.55 22.42 0.21 -1.87 16 12 C -0.08 -0.84 9.88 22.22 0.22 -0.62 16 13 C -0.15 -2.05 9.64 22.25 0.21 -1.83 16 14 C -0.09 -1.62 7.76 22.30 0.17 -1.44 16 15 C -0.16 -2.86 2.58 -19.75 -0.05 -2.91 16 16 C 0.12 3.90 4.09 45.52 0.19 4.08 16 17 C -0.16 -5.35 7.25 31.12 0.23 -5.13 16 18 C 0.16 5.88 4.56 45.52 0.21 6.08 16 19 N -0.74 -35.03 5.11 -320.46 -1.64 -36.67 16 20 C -0.23 -13.26 10.45 84.03 0.88 -12.38 16 21 H 0.07 4.08 8.06 -2.91 -0.02 4.05 16 22 C -0.06 -3.32 5.50 84.86 0.47 -2.85 16 23 N -0.98 -63.07 13.97 21.65 0.30 -62.77 16 24 Si 0.95 47.27 27.74 68.60 1.90 49.17 16 25 H -0.28 -13.36 7.11 99.48 0.71 -12.66 16 26 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.26 -12.59 6.52 99.48 0.65 -11.94 16 28 C -0.15 -4.37 7.34 31.12 0.23 -4.14 16 29 H 0.08 1.66 3.68 -2.39 -0.01 1.65 16 30 H 0.08 1.56 5.70 -2.39 -0.01 1.55 16 31 H 0.09 1.69 1.85 -2.48 0.00 1.69 16 32 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 33 H 0.06 1.31 7.85 -2.39 -0.02 1.29 16 34 H 0.06 1.13 6.52 -2.39 -0.02 1.11 16 35 H 0.09 1.49 8.09 -2.39 -0.02 1.47 16 36 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.07 1.13 5.32 -2.39 -0.01 1.11 16 38 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 40 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 41 H 0.14 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.12 2.13 6.47 -2.91 -0.02 2.11 16 43 H 0.08 3.21 7.21 -2.39 -0.02 3.19 16 44 H 0.11 2.83 6.15 -2.39 -0.01 2.81 16 45 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 47 H 0.36 17.24 5.76 -92.71 -0.53 16.70 16 48 H 0.26 15.92 8.31 -92.70 -0.77 15.15 16 49 H 0.06 2.03 8.14 -2.38 -0.02 2.01 16 50 H 0.11 2.66 7.39 -2.39 -0.02 2.64 16 Total: -1.00 -74.18 371.35 3.33 -70.85 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: 0.39 Total: 32.15 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 5.53 Total: -7.50 kcal Atomic # 7 Polarization: -113.63 SS G_CDS: -3.54 Total: -117.17 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.95 Total: -27.50 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.90 Total: 49.17 kcal Total: -74.18 3.33 -70.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999710151.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.059 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds