Wall clock time and date at job start Wed Apr 1 2020 03:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 113.30897 * 2 1 4 4 C 1.55780 * 114.08657 * 132.79114 * 2 1 3 5 5 H 1.08996 * 114.12385 * 36.90880 * 4 2 1 6 6 N 1.46505 * 114.12396 * 264.53494 * 4 2 1 7 7 C 1.34779 * 119.99920 * 155.00193 * 6 4 2 8 8 O 1.21582 * 119.99791 * 359.97438 * 7 6 4 9 9 C 1.47537 * 119.99762 * 179.97438 * 7 6 4 10 10 C 1.39699 * 120.19399 * 359.97438 * 9 7 6 11 11 C 1.37783 * 119.91201 * 179.97438 * 10 9 7 12 12 C 1.38551 * 120.29972 * 359.97390 * 11 10 9 13 13 C 1.38060 * 120.38433 * 0.02621 * 12 11 10 14 14 C 1.38705 * 120.08679 * 359.73774 * 13 12 11 15 15 O 1.35655 * 120.14857 * 180.27508 * 14 13 12 16 16 C 1.50005 * 83.86203 * 150.81600 * 4 2 1 17 17 H 1.09003 * 112.51356 * 76.12028 * 16 4 2 18 18 C 1.51206 * 126.16045 * 218.52056 * 16 4 2 19 19 C 1.54095 * 106.19881 * 161.40595 * 18 16 4 20 20 C 1.52501 * 112.67556 * 304.56310 * 19 18 16 21 21 N 1.48402 * 111.86475 * 46.78807 * 20 19 18 22 22 C 1.36936 * 123.16984 * 128.16092 * 21 20 19 23 23 H 1.07997 * 120.00119 * 205.49037 * 22 21 20 24 24 C 1.38810 * 119.99883 * 25.48791 * 22 21 20 25 25 N 1.31623 * 120.00163 * 12.95385 * 24 22 21 26 26 Si 1.86800 * 120.00212 * 192.95885 * 24 22 21 27 27 H 1.48504 * 109.47245 * 59.99539 * 26 24 22 28 28 H 1.48492 * 109.47354 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.46762 * 300.00176 * 26 24 22 30 30 C 1.45381 * 113.66521 * 308.15649 * 21 20 19 31 31 H 1.08997 * 112.08987 * 301.19451 * 30 21 20 32 32 H 1.08995 * 109.47425 * 306.71506 * 1 2 3 33 33 H 1.08998 * 109.47277 * 66.71603 * 1 2 3 34 34 H 1.09000 * 109.47048 * 186.71415 * 1 2 3 35 35 H 1.09002 * 109.46868 * 199.97087 * 3 2 1 36 36 H 1.09002 * 109.46754 * 319.96211 * 3 2 1 37 37 H 1.08993 * 109.47224 * 79.96879 * 3 2 1 38 38 H 0.97005 * 119.99831 * 334.99647 * 6 4 2 39 39 H 1.08008 * 120.04708 * 359.97438 * 10 9 7 40 40 H 1.08000 * 119.85781 * 180.02562 * 11 10 9 41 41 H 1.07994 * 119.81038 * 180.02562 * 12 11 10 42 42 H 1.08002 * 119.95482 * 180.02562 * 13 12 11 43 43 H 0.96698 * 114.00482 * 270.21091 * 15 14 13 44 44 H 1.09004 * 110.10345 * 42.24073 * 18 16 4 45 45 H 1.08999 * 110.19833 * 280.62703 * 18 16 4 46 46 H 1.08998 * 108.84088 * 183.73677 * 19 18 16 47 47 H 1.09004 * 108.75296 * 65.33028 * 19 18 16 48 48 H 1.08994 * 109.00021 * 286.17197 * 20 19 18 49 49 H 1.09000 * 108.93487 * 167.35707 * 20 19 18 50 50 H 0.97000 * 119.99947 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1354 1.4052 0.0000 4 6 2.1657 -0.9661 1.0436 5 1 1.6214 -1.9013 1.1745 6 7 2.5263 -0.3254 2.3108 7 6 2.6004 -1.0584 3.4395 8 8 2.3674 -2.2512 3.4060 9 6 2.9641 -0.4133 4.7155 10 6 3.2331 0.9569 4.7584 11 6 3.5717 1.5535 5.9533 12 6 3.6464 0.8007 7.1141 13 6 3.3831 -0.5542 7.0857 14 6 3.0359 -1.1704 5.8925 15 8 2.7715 -2.5006 5.8643 16 6 3.2890 -1.0393 0.0522 17 1 3.9181 -0.1493 0.0677 18 6 4.0876 -2.2735 -0.3018 19 6 4.7655 -1.9741 -1.6528 20 6 3.7687 -1.5708 -2.7342 21 7 2.8026 -0.5562 -2.2446 22 6 2.5566 0.6211 -2.8991 23 1 2.1957 1.4787 -2.3507 24 6 2.7711 0.7125 -4.2675 25 7 2.9616 -0.3789 -4.9781 26 14 2.7896 2.3843 -5.1006 27 1 3.8677 3.2189 -4.5119 28 1 3.0357 2.2102 -6.5545 29 1 1.4793 3.0531 -4.8974 30 6 2.1419 -0.9300 -1.0047 31 1 1.5932 -1.8671 -1.0990 32 1 -0.3634 0.6143 0.8237 33 1 -0.3634 0.4062 -0.9439 34 1 -0.3633 -1.0206 0.1202 35 1 3.1662 1.3566 -0.3510 36 1 1.5565 2.0502 -0.6611 37 1 2.1147 1.8097 1.0119 38 1 2.7119 0.6263 2.3375 39 1 3.1757 1.5478 3.8561 40 1 3.7791 2.6129 5.9856 41 1 3.9121 1.2765 8.0464 42 1 3.4429 -1.1343 7.9948 43 1 3.5477 -3.0525 5.6971 44 1 3.4250 -3.1338 -0.3977 45 1 4.8418 -2.4654 0.4614 46 1 5.3017 -2.8640 -1.9825 47 1 5.4812 -1.1638 -1.5138 48 1 3.2205 -2.4551 -3.0591 49 1 4.3149 -1.1601 -3.5833 50 1 3.1112 -0.3151 -5.9344 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087271823.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:15:09 Heat of formation + Delta-G solvation = -2.626048 kcal Electronic energy + Delta-G solvation = -31475.260704 eV Core-core repulsion = 27469.037439 eV Total energy + Delta-G solvation = -4006.223264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.47577 -41.11729 -39.26207 -37.63392 -36.92743 -34.77181 -34.58461 -32.36997 -31.74874 -30.83749 -30.69813 -28.62527 -27.49835 -26.43795 -24.83783 -23.80467 -23.32662 -22.25584 -21.38442 -20.87943 -20.08028 -19.28827 -18.61947 -18.26847 -17.31249 -16.69642 -16.60379 -16.21552 -16.02166 -15.90425 -15.56022 -15.50434 -15.05851 -14.99588 -14.73340 -14.65548 -14.33365 -14.09557 -14.00554 -13.42529 -13.27315 -13.12814 -13.06844 -12.88319 -12.79609 -12.74306 -12.60911 -12.45229 -12.36218 -12.12843 -11.92153 -11.73978 -11.66434 -11.59705 -11.55446 -11.09517 -10.73581 -10.59647 -10.26962 -10.09237 -9.82969 -9.61342 -8.52707 -7.76281 -5.21706 -0.17486 0.30614 1.49380 1.50901 1.56871 1.90221 2.16008 2.56607 2.77647 3.26252 3.30455 3.39159 3.44505 3.69905 3.71195 3.85004 3.88329 4.11199 4.14544 4.24296 4.35307 4.39730 4.45907 4.48131 4.60066 4.63884 4.65052 4.74790 4.80359 4.81631 4.92337 4.96117 5.02959 5.08858 5.11547 5.15931 5.23425 5.27086 5.29627 5.33253 5.36777 5.46775 5.47167 5.53526 5.60527 5.73084 5.76948 5.82144 5.83543 6.43589 6.59965 6.81863 7.17603 7.26778 7.90320 8.54538 9.29830 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017762 B = 0.002964 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.054961 B = 9444.117194 C =10072.237535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.059 4.059 3 C -0.117 4.117 4 C 0.160 3.840 5 H 0.098 0.902 6 N -0.698 5.698 7 C 0.552 3.448 8 O -0.568 6.568 9 C -0.189 4.189 10 C -0.073 4.073 11 C -0.135 4.135 12 C -0.070 4.070 13 C -0.162 4.162 14 C 0.144 3.856 15 O -0.500 6.500 16 C -0.153 4.153 17 H 0.092 0.908 18 C -0.085 4.085 19 C -0.123 4.123 20 C 0.171 3.829 21 N -0.582 5.582 22 C -0.236 4.236 23 H 0.089 0.911 24 C -0.062 4.062 25 N -0.945 5.945 26 Si 0.961 3.039 27 H -0.276 1.276 28 H -0.303 1.303 29 H -0.276 1.276 30 C 0.132 3.868 31 H 0.030 0.970 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.409 0.591 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.164 0.836 42 H 0.150 0.850 43 H 0.405 0.595 44 H 0.047 0.953 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.050 0.950 48 H -0.014 1.014 49 H 0.062 0.938 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.149 5.321 24.844 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.174 4.174 4 C 0.054 3.946 5 H 0.116 0.884 6 N -0.349 5.349 7 C 0.341 3.659 8 O -0.448 6.448 9 C -0.193 4.193 10 C -0.091 4.091 11 C -0.153 4.153 12 C -0.088 4.088 13 C -0.180 4.180 14 C 0.098 3.902 15 O -0.312 6.312 16 C -0.175 4.175 17 H 0.110 0.890 18 C -0.123 4.123 19 C -0.162 4.162 20 C 0.046 3.954 21 N -0.304 5.304 22 C -0.365 4.365 23 H 0.107 0.893 24 C -0.256 4.256 25 N -0.593 5.593 26 Si 0.790 3.210 27 H -0.202 1.202 28 H -0.230 1.230 29 H -0.202 1.202 30 C 0.024 3.976 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.248 0.752 39 H 0.164 0.836 40 H 0.180 0.820 41 H 0.181 0.819 42 H 0.168 0.832 43 H 0.264 0.736 44 H 0.065 0.935 45 H 0.077 0.923 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.004 0.996 49 H 0.080 0.920 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.432 4.681 24.691 25.248 hybrid contribution 0.421 0.223 -1.618 1.687 sum 2.853 4.904 23.073 23.760 Atomic orbital electron populations 1.21668 0.93574 1.01650 1.01811 1.21868 0.95494 0.95613 0.93048 1.21603 1.01046 0.93107 1.01639 1.21975 0.95949 0.96299 0.80329 0.88407 1.45798 1.69609 1.12689 1.06848 1.18543 0.76730 0.86369 0.84234 1.90765 1.50888 1.16325 1.86803 1.20466 1.09781 0.96221 0.92818 1.21529 0.95445 0.91870 1.00282 1.21522 1.00153 1.02026 0.91577 1.21677 0.94614 0.92573 0.99977 1.21695 1.02046 0.96839 0.97462 1.18869 0.94921 0.84560 0.91879 1.84700 1.38628 1.14036 1.93868 1.23308 0.97160 0.99283 0.97706 0.88972 1.21077 0.98571 0.96740 0.95926 1.21922 0.98301 1.00235 0.95747 1.20704 0.90093 0.89682 0.94905 1.44040 1.42447 1.18851 1.25021 1.19702 1.38022 0.89275 0.89534 0.89318 1.25812 1.03042 0.99519 0.97197 1.70144 1.55814 1.27808 1.05570 0.85419 0.78302 0.80490 0.76755 1.20192 1.22970 1.20176 1.21579 0.94206 0.95646 0.86214 0.95286 0.90840 0.93233 0.93186 0.92271 0.92318 0.90479 0.75177 0.83637 0.82028 0.81859 0.83239 0.73607 0.93452 0.92279 0.91729 0.93095 0.99598 0.91953 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.89 9.22 71.98 0.66 -3.22 16 2 C -0.06 -1.88 1.37 -55.19 -0.08 -1.96 16 3 C -0.12 -3.36 6.93 71.98 0.50 -2.86 16 4 C 0.16 4.98 3.54 42.47 0.15 5.13 16 5 H 0.10 3.46 7.40 -2.39 -0.02 3.44 16 6 N -0.70 -17.83 5.27 -457.89 -2.41 -20.24 16 7 C 0.55 15.88 7.76 86.70 0.67 16.55 16 8 O -0.57 -20.73 14.75 16.94 0.25 -20.48 16 9 C -0.19 -4.25 5.89 -20.01 -0.12 -4.37 16 10 C -0.07 -1.11 9.53 22.52 0.21 -0.89 16 11 C -0.14 -1.42 10.02 22.24 0.22 -1.20 16 12 C -0.07 -0.71 10.03 22.30 0.22 -0.48 16 13 C -0.16 -2.37 9.98 22.34 0.22 -2.15 16 14 C 0.14 3.12 6.72 22.84 0.15 3.27 16 15 O -0.50 -12.18 11.58 -68.79 -0.80 -12.98 16 16 C -0.15 -5.30 2.84 -14.17 -0.04 -5.34 16 17 H 0.09 3.24 6.08 -2.39 -0.01 3.23 16 18 C -0.09 -3.03 6.12 30.38 0.19 -2.84 16 19 C -0.12 -4.77 5.90 30.80 0.18 -4.59 16 20 C 0.17 8.39 5.33 85.85 0.46 8.84 16 21 N -0.58 -28.28 2.89 -689.91 -1.99 -30.27 16 22 C -0.24 -12.23 9.10 84.03 0.76 -11.46 16 23 H 0.09 4.29 5.23 -2.91 -0.02 4.27 16 24 C -0.06 -3.39 5.13 84.86 0.44 -2.96 16 25 N -0.95 -56.08 10.95 21.65 0.24 -55.84 16 26 Si 0.96 44.12 29.57 68.60 2.03 46.15 16 27 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 30 C 0.13 5.34 3.02 42.87 0.13 5.47 16 31 H 0.03 1.31 7.97 -2.39 -0.02 1.29 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.50 8.12 -2.39 -0.02 1.48 16 35 H 0.06 1.93 5.79 -2.39 -0.01 1.92 16 36 H 0.06 1.79 7.00 -2.39 -0.02 1.77 16 37 H 0.08 1.57 6.59 -2.39 -0.02 1.55 16 38 H 0.41 8.10 4.81 -92.70 -0.45 7.65 16 39 H 0.15 1.62 6.40 -2.91 -0.02 1.60 16 40 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 41 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 42 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 43 H 0.40 7.09 9.06 -74.06 -0.67 6.41 16 44 H 0.05 1.73 8.03 -2.39 -0.02 1.71 16 45 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 48 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 49 H 0.06 3.45 6.01 -2.39 -0.01 3.43 16 50 H 0.24 14.27 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -72.64 384.56 2.12 -70.52 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: -0.14 Total: 28.22 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 4.94 Total: -5.07 kcal Atomic # 7 Polarization: -102.19 SS G_CDS: -4.17 Total: -106.36 kcal Atomic # 8 Polarization: -32.92 SS G_CDS: -0.55 Total: -33.46 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.64 2.12 -70.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087271823.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.890 kcal (2) G-P(sol) polarization free energy of solvation -72.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds