Wall clock time and date at job start Wed Apr 1 2020 05:11:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45205 * 109.46911 * 119.99874 * 2 1 3 6 6 C 1.34636 * 116.99806 * 60.00322 * 5 2 1 7 7 O 1.21503 * 120.00147 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99531 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99665 * 179.72227 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08992 * 110.62445 * 308.10750 * 10 9 8 12 12 C 1.55138 * 110.70563 * 71.40040 * 10 9 8 13 13 C 1.54902 * 101.65454 * 154.03727 * 12 10 9 14 14 N 1.47845 * 104.79508 * 322.92969 * 13 12 10 15 15 C 1.46903 * 111.00141 * 146.36045 * 14 13 12 16 16 C 1.53002 * 109.46981 * 69.15934 * 15 14 13 17 17 C 1.52996 * 109.47433 * 180.02562 * 16 15 14 18 18 S 1.80994 * 109.47335 * 179.97438 * 17 16 15 19 19 C 1.76208 * 100.00131 * 180.02562 * 18 17 16 20 20 H 1.08002 * 119.99830 * 0.02562 * 19 18 17 21 21 C 1.38794 * 119.99892 * 180.02562 * 19 18 17 22 22 N 1.31631 * 119.99660 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00311 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47113 * 90.00269 * 23 21 19 25 25 H 1.48502 * 109.47031 * 210.00045 * 23 21 19 26 26 H 1.48500 * 109.46985 * 330.00309 * 23 21 19 27 27 C 1.47444 * 108.56982 * 24.09658 * 14 13 12 28 28 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 29 29 H 1.08996 * 109.47160 * 59.99677 * 1 2 3 30 30 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47127 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 33 33 H 1.08999 * 109.47210 * 60.00327 * 3 2 1 34 34 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 35 35 H 1.09001 * 109.46931 * 59.99857 * 4 2 1 36 36 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 37 37 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 38 38 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 39 39 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 40 40 H 1.09002 * 110.99451 * 272.13016 * 12 10 9 41 41 H 1.09008 * 110.99251 * 35.94572 * 12 10 9 42 42 H 1.09006 * 110.37920 * 204.10021 * 13 12 10 43 43 H 1.08997 * 110.46930 * 81.80399 * 13 12 10 44 44 H 1.08994 * 109.47424 * 189.15906 * 15 14 13 45 45 H 1.08998 * 109.47139 * 309.16484 * 15 14 13 46 46 H 1.09001 * 109.47045 * 299.99857 * 16 15 14 47 47 H 1.08997 * 109.47293 * 59.99789 * 16 15 14 48 48 H 1.08994 * 109.47142 * 300.00076 * 17 16 15 49 49 H 1.09004 * 109.47136 * 59.99969 * 17 16 15 50 50 H 0.97004 * 120.00340 * 179.97438 * 22 21 19 51 51 H 1.08999 * 109.88706 * 239.60617 * 27 14 13 52 52 H 1.08996 * 109.89123 * 118.41518 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6694 -4.0652 2.5860 10 6 2.2654 -4.6117 3.8849 11 1 3.3386 -4.4254 3.9231 12 6 1.5535 -3.9944 5.1174 13 6 1.7731 -5.0922 6.1879 14 7 1.6571 -6.3680 5.4498 15 6 2.5536 -7.3859 6.0139 16 6 2.0501 -7.7980 7.3987 17 6 2.9840 -8.8577 7.9865 18 16 2.3888 -9.3445 9.6250 19 6 3.6139 -10.5361 10.0540 20 1 4.4166 -10.7571 9.3660 21 6 3.5473 -11.1908 11.2761 22 7 4.4628 -12.0805 11.5967 23 14 2.1594 -10.8081 12.4663 24 1 1.0142 -11.7150 12.1993 25 1 2.6334 -11.0064 13.8596 26 1 1.7273 -9.3988 12.2861 27 6 1.9676 -6.1189 4.0301 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7489 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7209 -1.2494 37 1 2.6276 -2.2368 3.0830 38 1 0.5822 -4.1307 2.6293 39 1 2.0354 -4.6517 1.7433 40 1 2.0277 -3.0590 5.4144 41 1 0.4913 -3.8470 4.9215 42 1 1.0056 -5.0291 6.9594 43 1 2.7644 -4.9992 6.6314 44 1 2.5711 -8.2575 5.3595 45 1 3.5599 -6.9762 6.1003 46 1 2.0326 -6.9264 8.0531 47 1 1.0437 -8.2077 7.3123 48 1 3.0019 -9.7293 7.3323 49 1 3.9902 -8.4476 8.0729 50 1 4.4166 -12.5379 12.4509 51 1 1.1124 -6.3893 3.4106 52 1 2.8411 -6.6997 3.7341 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080627950.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:02 Heat of formation + Delta-G solvation = -100.706661 kcal Electronic energy + Delta-G solvation = -27194.811166 eV Core-core repulsion = 23319.778758 eV Total energy + Delta-G solvation = -3875.032408 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15317 -39.61460 -37.78884 -35.69762 -34.57468 -33.77553 -32.43474 -31.00889 -29.74476 -27.86180 -27.81006 -26.51284 -25.66237 -24.64586 -22.63308 -21.87676 -21.04719 -20.58101 -20.19178 -18.50902 -17.46413 -17.14561 -16.68531 -16.32214 -15.90988 -15.33239 -15.15616 -14.97781 -14.92482 -14.62022 -14.35056 -14.06906 -13.85467 -13.73824 -13.30807 -12.97273 -12.90238 -12.84188 -12.71138 -12.51954 -12.35087 -12.34475 -11.94667 -11.88031 -11.76934 -11.63715 -11.52112 -11.40273 -11.25497 -11.08713 -11.04730 -10.96874 -10.78296 -10.44360 -10.41613 -10.11923 -9.76741 -9.58538 -9.00096 -8.55542 -8.44147 -6.93549 -6.28082 -4.00234 1.76667 2.47489 3.00936 3.30770 3.45856 3.54988 3.70037 3.85492 4.17347 4.21653 4.26200 4.30919 4.32167 4.45037 4.49475 4.81520 4.87661 4.99229 5.01789 5.06710 5.08574 5.09129 5.10836 5.17745 5.22595 5.24094 5.31418 5.35804 5.41038 5.41927 5.49049 5.53178 5.54101 5.64810 5.69182 5.74073 5.77323 5.83479 5.84942 5.90886 5.97618 5.99426 6.13738 6.23164 6.47988 6.64731 6.84753 6.97711 7.00831 7.95649 7.99875 8.44366 9.17964 10.81432 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.042618 B = 0.001351 C = 0.001340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.839513 B =20715.373601 C =20883.683180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.366 6.366 6 C 0.649 3.351 7 O -0.568 6.568 8 N -0.710 5.710 9 C 0.149 3.851 10 C -0.124 4.124 11 H 0.084 0.916 12 C -0.125 4.125 13 C 0.041 3.959 14 N -0.527 5.527 15 C 0.055 3.945 16 C -0.095 4.095 17 C -0.083 4.083 18 S -0.215 6.215 19 C -0.503 4.503 20 H 0.087 0.913 21 C 0.092 3.908 22 N -0.882 5.882 23 Si 0.862 3.138 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.238 1.238 27 C 0.052 3.948 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.406 0.594 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.035 0.965 46 H 0.064 0.936 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.065 0.935 50 H 0.270 0.730 51 H 0.082 0.918 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.320 26.957 -24.238 36.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.100 3.900 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.281 6.281 6 C 0.402 3.598 7 O -0.457 6.457 8 N -0.369 5.369 9 C 0.027 3.973 10 C -0.144 4.144 11 H 0.103 0.897 12 C -0.163 4.163 13 C -0.087 4.087 14 N -0.251 5.251 15 C -0.075 4.075 16 C -0.134 4.134 17 C -0.232 4.232 18 S 0.013 5.987 19 C -0.650 4.650 20 H 0.105 0.895 21 C -0.116 4.116 22 N -0.519 5.519 23 Si 0.687 3.313 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.162 1.162 27 C -0.077 4.077 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.241 0.759 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.102 0.898 43 H 0.068 0.932 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.100 0.900 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.008 26.756 -23.929 36.573 hybrid contribution 1.784 -0.066 0.204 1.797 sum -5.224 26.690 -23.725 36.091 Atomic orbital electron populations 1.22520 0.93912 1.05122 1.02557 1.22079 0.94418 0.91502 0.82010 1.21870 1.02283 0.92498 1.03203 1.22521 1.01562 1.03536 0.96491 1.86302 1.71594 1.23635 1.46572 1.18086 0.78896 0.80528 0.82270 1.90911 1.41021 1.70467 1.43275 1.44745 1.55572 1.12917 1.23663 1.21354 1.00290 0.78539 0.97144 1.22682 1.00640 0.96817 0.94252 0.89716 1.22834 1.01326 0.98011 0.94124 1.23089 1.01146 0.87795 0.96634 1.63591 1.52071 1.08047 1.01398 1.22398 0.93392 0.94835 0.96832 1.21289 0.99751 0.98352 0.94035 1.23020 1.00972 1.00267 0.98898 1.84162 1.42147 1.54510 1.17898 1.22135 1.11948 1.24029 1.06908 0.89468 1.24792 0.95980 0.93699 0.97156 1.69940 1.33838 1.25056 1.23093 0.86666 0.82440 0.81612 0.80599 1.19345 1.20127 1.16193 1.22767 1.01018 0.93060 0.90820 0.92138 0.91083 0.89349 0.91449 0.90070 0.91426 0.89359 0.91082 0.92169 0.75948 0.90556 0.90908 0.90823 0.90245 0.89813 0.93181 0.90678 0.94640 0.91684 0.90668 0.91431 0.91669 0.91995 0.89972 0.92178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.30 8.37 37.16 0.31 -0.99 16 2 C 0.14 0.97 1.13 -90.62 -0.10 0.87 16 3 C -0.14 -0.67 8.85 37.16 0.33 -0.34 16 4 C -0.18 -1.29 8.37 37.16 0.31 -0.98 16 5 O -0.37 -3.19 9.94 -40.31 -0.40 -3.59 16 6 C 0.65 6.19 8.06 54.06 0.44 6.62 16 7 O -0.57 -6.70 11.88 -19.27 -0.23 -6.93 16 8 N -0.71 -5.07 5.48 -65.28 -0.36 -5.43 16 9 C 0.15 1.04 4.97 -4.04 -0.02 1.02 16 10 C -0.12 -0.82 2.96 -88.79 -0.26 -1.08 16 11 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 12 C -0.12 -0.88 6.44 -24.60 -0.16 -1.04 16 13 C 0.04 0.39 5.78 -2.30 -0.01 0.38 16 14 N -0.53 -5.69 5.16 -231.25 -1.19 -6.88 16 15 C 0.05 0.67 4.56 -3.82 -0.02 0.66 16 16 C -0.10 -1.45 5.26 -26.73 -0.14 -1.59 16 17 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 18 S -0.21 -5.25 19.41 -107.50 -2.09 -7.34 16 19 C -0.50 -14.64 10.04 30.94 0.31 -14.33 16 20 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 21 C 0.09 2.69 5.50 -17.43 -0.10 2.60 16 22 N -0.88 -26.82 13.97 55.49 0.78 -26.05 16 23 Si 0.86 21.60 27.74 -169.99 -4.71 16.89 16 24 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.24 -5.84 6.74 56.52 0.38 -5.46 16 27 C 0.05 0.44 6.46 -2.83 -0.02 0.42 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.83 5.88 -51.93 -0.31 0.52 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.82 5.88 -51.93 -0.31 0.52 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.41 2.16 8.58 -40.82 -0.35 1.81 16 38 H 0.08 0.60 8.00 -51.92 -0.42 0.18 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.08 0.59 7.94 -51.92 -0.41 0.18 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.05 0.49 7.62 -51.93 -0.40 0.10 16 44 H 0.07 0.91 8.03 -51.93 -0.42 0.49 16 45 H 0.04 0.43 7.85 -51.93 -0.41 0.02 16 46 H 0.06 0.99 7.49 -51.93 -0.39 0.60 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.07 1.30 8.14 -51.92 -0.42 0.88 16 49 H 0.06 1.25 8.14 -51.91 -0.42 0.83 16 50 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.08 0.68 7.82 -51.93 -0.41 0.27 16 52 H 0.06 0.49 7.55 -51.93 -0.39 0.10 16 LS Contribution 419.93 15.07 6.33 6.33 Total: -1.00 -32.73 419.93 -10.49 -43.22 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -9.69 Total: -1.06 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 1.08 Total: -9.16 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.78 Total: -38.35 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: -0.63 Total: -10.52 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.71 Total: 16.89 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.09 Total: -7.34 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.73 -10.49 -43.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080627950.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.489 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds