Wall clock time and date at job start Wed Apr 1 2020 05:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47177 * 2 1 4 4 C 1.53003 * 109.47119 * 240.00074 * 2 1 3 5 5 O 1.45195 * 109.47451 * 120.00312 * 2 1 3 6 6 C 1.34634 * 117.00432 * 60.00162 * 5 2 1 7 7 O 1.21516 * 119.99691 * 359.97438 * 6 5 2 8 8 N 1.34776 * 120.00319 * 180.02562 * 6 5 2 9 9 C 1.47424 * 125.65044 * 359.96458 * 8 6 5 10 10 C 1.54907 * 104.83084 * 155.91099 * 9 8 6 11 11 C 1.55156 * 101.58231 * 37.01496 * 10 9 8 12 12 F 1.39898 * 110.71927 * 83.03529 * 11 10 9 13 13 C 1.50696 * 110.71884 * 206.13058 * 11 10 9 14 14 O 1.21284 * 120.00096 * 9.99950 * 13 11 10 15 15 N 1.34779 * 120.00208 * 189.99891 * 13 11 10 16 16 C 1.46496 * 120.00107 * 180.02562 * 15 13 11 17 17 C 1.52997 * 109.46953 * 180.02562 * 16 15 13 18 18 C 1.53006 * 109.47127 * 179.97438 * 17 16 15 19 19 C 1.50698 * 109.47184 * 180.02562 * 18 17 16 20 20 H 1.08005 * 119.99819 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00046 * 180.02562 * 19 18 17 22 22 N 1.31511 * 120.00192 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47454 * 59.99696 * 23 21 19 25 25 H 1.48506 * 109.47297 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.47261 * 299.99689 * 23 21 19 27 27 C 1.47023 * 125.64894 * 180.02562 * 8 6 5 28 28 H 1.08999 * 109.46499 * 299.99207 * 1 2 3 29 29 H 1.08996 * 109.47059 * 60.00194 * 1 2 3 30 30 H 1.09001 * 109.46889 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47069 * 180.02562 * 3 2 1 32 32 H 1.09003 * 109.46536 * 300.00639 * 3 2 1 33 33 H 1.09001 * 109.46824 * 60.00171 * 3 2 1 34 34 H 1.09005 * 109.47240 * 300.00080 * 4 2 1 35 35 H 1.09008 * 109.47072 * 59.99595 * 4 2 1 36 36 H 1.09000 * 109.47515 * 179.97438 * 4 2 1 37 37 H 1.08999 * 110.36050 * 37.07435 * 9 8 6 38 38 H 1.08996 * 110.45923 * 274.80298 * 9 8 6 39 39 H 1.08997 * 111.00614 * 278.93655 * 10 9 8 40 40 H 1.09005 * 110.99936 * 155.08541 * 10 9 8 41 41 H 0.96999 * 119.99538 * 359.97438 * 15 13 11 42 42 H 1.08996 * 109.47565 * 60.00082 * 16 15 13 43 43 H 1.09001 * 109.47062 * 299.99546 * 16 15 13 44 44 H 1.09001 * 109.47502 * 60.00124 * 17 16 15 45 45 H 1.09001 * 109.47289 * 299.99920 * 17 16 15 46 46 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 47 47 H 1.08993 * 109.46955 * 60.00011 * 18 17 16 48 48 H 0.96996 * 120.00505 * 179.97438 * 22 21 19 49 49 H 1.09004 * 109.88430 * 61.59794 * 27 8 6 50 50 H 1.08999 * 109.88076 * 300.43492 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1854 6 6 1.6525 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0675 -2.6655 2.4170 9 6 2.9173 -2.1401 3.5011 10 6 2.5997 -3.0367 4.7237 11 6 2.4154 -4.4238 4.0534 12 9 3.6531 -5.0433 3.8495 13 6 1.5125 -5.3007 4.8821 14 8 0.9012 -4.8293 5.8176 15 7 1.3842 -6.6088 4.5837 16 6 0.5060 -7.4611 5.3889 17 6 0.5416 -8.8899 4.8431 18 6 -0.3752 -9.7803 5.6845 19 6 -0.3397 -11.1878 5.1472 20 1 0.2749 -11.4236 4.2910 21 6 -1.0926 -12.1742 5.7481 22 7 -1.8413 -11.8870 6.7904 23 14 -1.0492 -13.9187 5.0817 24 1 0.3403 -14.4388 5.1458 25 1 -1.9388 -14.7830 5.8984 26 1 -1.5141 -13.9216 3.6713 27 6 1.7488 -4.0711 2.7070 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1393 36 1 3.1300 -0.7209 -1.2496 37 1 2.6610 -1.1024 3.7148 38 1 3.9707 -2.2226 3.2335 39 1 1.6818 -2.7155 5.2159 40 1 3.4336 -3.0497 5.4257 41 1 1.8728 -6.9856 3.8353 42 1 -0.5138 -7.0791 5.3421 43 1 0.8475 -7.4594 6.4241 44 1 1.5614 -9.2717 4.8903 45 1 0.2004 -8.8920 3.8078 46 1 -0.0335 -9.7782 6.7196 47 1 -1.3950 -9.3987 5.6377 48 1 -2.3713 -12.5808 7.2129 49 1 2.1445 -4.7113 1.9184 50 1 0.6690 -4.1982 2.7836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175571820.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:02:34 Heat of formation + Delta-G solvation = -195.156472 kcal Electronic energy + Delta-G solvation = -30554.422516 eV Core-core repulsion = 26109.081281 eV Total energy + Delta-G solvation = -4445.341235 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 344.194 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.17141 -41.96255 -41.01608 -39.26198 -37.57160 -37.03512 -35.26806 -35.09827 -33.21305 -32.43755 -30.61383 -28.64930 -28.36473 -28.28030 -26.25390 -24.99943 -23.28796 -22.78358 -22.37162 -21.16161 -20.54923 -19.34408 -19.03996 -18.51601 -17.77546 -17.56562 -17.29682 -17.13500 -16.50705 -16.43364 -16.24647 -15.96611 -15.86430 -15.47613 -15.15901 -14.95668 -14.78822 -14.36245 -14.30292 -14.10230 -13.82761 -13.78750 -13.53781 -13.35385 -13.12387 -12.99663 -12.87362 -12.85504 -12.74152 -12.73200 -12.57117 -12.47924 -12.42997 -12.30451 -12.18869 -11.69362 -11.63499 -11.41880 -11.28457 -11.19360 -10.97633 -10.54731 -10.27949 -10.02420 -8.19596 -6.30804 0.77546 1.18199 1.41689 1.44307 1.52102 1.61239 1.81368 2.41894 2.64152 2.78701 2.92167 3.14177 3.25687 3.49027 3.74161 3.79386 3.80775 3.94610 4.06742 4.10246 4.18653 4.26473 4.43847 4.49800 4.52601 4.55213 4.62234 4.66245 4.77236 4.77356 4.85149 4.89078 4.89210 4.91883 4.92862 4.97301 5.15343 5.15629 5.27868 5.28366 5.32973 5.39857 5.51173 5.70296 5.83966 6.19012 6.20914 6.27669 6.86208 6.88325 7.11277 7.38628 8.92028 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018382 B = 0.001845 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.868025 B =15169.687801 C =15919.865600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.124 3.876 3 C -0.134 4.134 4 C -0.180 4.180 5 O -0.358 6.358 6 C 0.667 3.333 7 O -0.588 6.588 8 N -0.606 5.606 9 C 0.105 3.895 10 C -0.132 4.132 11 C 0.102 3.898 12 F -0.176 7.176 13 C 0.506 3.494 14 O -0.551 6.551 15 N -0.703 5.703 16 C 0.128 3.872 17 C -0.105 4.105 18 C 0.024 3.976 19 C -0.543 4.543 20 H 0.065 0.935 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.965 3.035 24 H -0.266 1.266 25 H -0.286 1.286 26 H -0.267 1.267 27 C 0.117 3.883 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.417 0.583 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.068 0.932 46 H -0.005 1.005 47 H -0.006 1.006 48 H 0.263 0.737 49 H 0.102 0.898 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.191 28.956 -13.625 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.088 3.912 3 C -0.191 4.191 4 C -0.237 4.237 5 O -0.273 6.273 6 C 0.423 3.577 7 O -0.479 6.479 8 N -0.348 5.348 9 C -0.016 4.016 10 C -0.171 4.171 11 C 0.080 3.920 12 F -0.157 7.157 13 C 0.289 3.711 14 O -0.429 6.429 15 N -0.354 5.354 16 C 0.004 3.996 17 C -0.143 4.143 18 C -0.014 4.014 19 C -0.581 4.581 20 H 0.083 0.917 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.790 3.210 24 H -0.191 1.191 25 H -0.211 1.211 26 H -0.192 1.192 27 C -0.006 4.006 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.123 0.877 40 H 0.144 0.856 41 H 0.254 0.746 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.013 0.987 47 H 0.012 0.988 48 H 0.072 0.928 49 H 0.121 0.879 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 12.421 29.145 -13.227 34.332 hybrid contribution -0.236 -1.599 -0.271 1.639 sum 12.185 27.546 -13.498 33.007 Atomic orbital electron populations 1.22489 0.94160 1.03523 1.03688 1.22483 0.94481 0.92862 0.81380 1.21878 1.02571 0.90244 1.04400 1.22479 1.01773 1.02090 0.97379 1.86311 1.71339 1.22129 1.47498 1.17531 0.78382 0.81012 0.80789 1.90932 1.42137 1.71140 1.43705 1.47003 1.53776 1.11810 1.22204 1.22614 0.95594 0.99674 0.83716 1.23384 1.06698 0.88936 0.98042 1.21885 0.80271 0.93954 0.95930 1.92965 1.42800 1.84077 1.95836 1.20596 0.82740 0.83004 0.84726 1.90748 1.47828 1.74122 1.30155 1.46044 1.46641 1.08485 1.34224 1.21373 0.93449 0.90088 0.94661 1.21625 1.00815 0.91779 1.00034 1.18940 0.93994 0.93883 0.94588 1.21653 1.26655 0.95062 1.14703 0.91653 1.25995 0.94953 1.03839 0.95222 1.70091 1.29325 1.35094 1.22818 0.85494 0.78363 0.78671 0.78469 1.19088 1.21139 1.19162 1.22263 1.01366 0.81998 0.94940 0.91934 0.89004 0.92293 0.90926 0.87986 0.91099 0.92206 0.89057 0.91692 0.87436 0.88611 0.87738 0.85630 0.74640 0.92311 0.92326 0.91343 0.91362 0.98703 0.98768 0.92821 0.87942 0.89657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.84 8.37 71.98 0.60 -2.24 16 2 C 0.12 1.84 1.13 -10.79 -0.01 1.83 16 3 C -0.13 -1.09 8.85 71.98 0.64 -0.45 16 4 C -0.18 -2.68 8.37 71.98 0.60 -2.08 16 5 O -0.36 -6.74 9.42 -55.43 -0.52 -7.26 16 6 C 0.67 15.17 7.93 129.79 1.03 16.20 16 7 O -0.59 -16.46 12.21 19.79 0.24 -16.22 16 8 N -0.61 -11.69 3.33 -942.11 -3.13 -14.82 16 9 C 0.11 1.37 6.92 86.85 0.60 1.97 16 10 C -0.13 -1.99 6.07 31.99 0.19 -1.80 16 11 C 0.10 1.96 1.43 -10.35 -0.01 1.95 16 12 F -0.18 -3.35 16.86 44.97 0.76 -2.59 16 13 C 0.51 13.28 6.76 87.66 0.59 13.87 16 14 O -0.55 -18.17 15.67 -3.04 -0.05 -18.22 16 15 N -0.70 -18.43 5.53 -463.07 -2.56 -20.99 16 16 C 0.13 4.26 5.67 86.38 0.49 4.75 16 17 C -0.10 -3.92 5.27 30.60 0.16 -3.76 16 18 C 0.02 1.21 4.97 29.85 0.15 1.36 16 19 C -0.54 -30.09 9.11 25.60 0.23 -29.85 16 20 H 0.07 3.41 7.74 -2.91 -0.02 3.38 16 21 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 22 N -0.93 -56.61 13.29 21.45 0.28 -56.32 16 23 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 26 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 27 C 0.12 2.29 6.27 86.73 0.54 2.84 16 28 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.30 5.88 -2.39 -0.01 1.29 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 1.26 5.88 -2.38 -0.01 1.25 16 35 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.11 1.12 8.04 -2.39 -0.02 1.10 16 38 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.10 1.84 7.27 -2.39 -0.02 1.82 16 40 H 0.13 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.42 8.79 8.40 -92.71 -0.78 8.01 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 45 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 48 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 49 H 0.10 1.87 8.12 -2.38 -0.02 1.85 16 50 H 0.09 1.87 7.81 -2.39 -0.02 1.85 16 Total: -1.00 -72.33 409.33 3.47 -68.85 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 0.15 Total: 16.90 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 6.27 Total: 4.92 kcal Atomic # 7 Polarization: -86.73 SS G_CDS: -5.41 Total: -92.14 kcal Atomic # 8 Polarization: -41.37 SS G_CDS: -0.33 Total: -41.70 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.76 Total: -2.59 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.33 3.47 -68.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175571820.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.304 kcal (2) G-P(sol) polarization free energy of solvation -72.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds