Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47099 * 2 1 4 4 C 1.50700 * 109.47179 * 120.00282 * 2 1 3 5 5 O 1.21282 * 119.99543 * 330.91642 * 4 2 1 6 6 N 1.34773 * 120.00167 * 150.91606 * 4 2 1 7 7 C 1.46927 * 120.63167 * 186.02278 * 6 4 2 8 8 C 1.53186 * 108.77393 * 233.63342 * 7 6 4 9 9 C 1.53036 * 109.31475 * 305.36131 * 8 7 6 10 10 C 1.50700 * 109.46232 * 181.38748 * 9 8 7 11 11 O 1.21274 * 120.00211 * 322.57573 * 10 9 8 12 12 N 1.34776 * 120.00006 * 142.57462 * 10 9 8 13 13 C 1.37146 * 119.99936 * 4.09211 * 12 10 9 14 14 H 1.07990 * 120.00097 * 310.92745 * 13 12 10 15 15 C 1.38891 * 119.99477 * 130.92410 * 13 12 10 16 16 N 1.31432 * 119.99611 * 159.42488 * 15 13 12 17 17 Si 1.86801 * 120.00445 * 339.42445 * 15 13 12 18 18 H 1.48506 * 109.46821 * 96.41822 * 17 15 13 19 19 H 1.48500 * 109.47101 * 216.41859 * 17 15 13 20 20 H 1.48502 * 109.46964 * 336.42333 * 17 15 13 21 21 C 1.39784 * 120.00265 * 184.09406 * 12 10 9 22 22 C 1.38957 * 120.07716 * 106.54120 * 21 12 10 23 23 C 1.38087 * 119.92131 * 179.97438 * 22 21 12 24 24 C 1.38311 * 120.07829 * 0.02562 * 23 22 21 25 25 C 1.38307 * 120.15480 * 359.97438 * 24 23 22 26 26 C 1.38086 * 120.07820 * 0.02562 * 25 24 23 27 27 C 1.53039 * 109.52751 * 61.37245 * 9 8 7 28 28 C 1.46927 * 120.63117 * 6.04632 * 6 4 2 29 29 H 1.09002 * 109.47011 * 299.99956 * 1 2 3 30 30 H 1.09004 * 109.46744 * 59.99653 * 1 2 3 31 31 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47011 * 240.00044 * 2 1 3 33 33 H 1.08993 * 109.47179 * 64.54454 * 3 2 1 34 34 H 1.09001 * 109.46692 * 184.54471 * 3 2 1 35 35 H 1.09004 * 109.47265 * 304.53837 * 3 2 1 36 36 H 1.08995 * 109.58489 * 113.83969 * 7 6 4 37 37 H 1.09005 * 109.70324 * 353.48600 * 7 6 4 38 38 H 1.09002 * 109.49754 * 185.40986 * 8 7 6 39 39 H 1.09007 * 109.50187 * 65.31736 * 8 7 6 40 40 H 1.09000 * 109.46120 * 301.35993 * 9 8 7 41 41 H 0.96997 * 119.99828 * 179.97438 * 16 15 13 42 42 H 1.08001 * 120.04204 * 359.70649 * 22 21 12 43 43 H 1.08008 * 119.95927 * 179.97438 * 23 22 21 44 44 H 1.07999 * 119.91936 * 179.97438 * 24 23 22 45 45 H 1.08001 * 119.95706 * 180.02562 * 25 24 23 46 46 H 1.07998 * 120.03657 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.49625 * 58.58026 * 27 9 8 48 48 H 1.08998 * 109.50007 * 178.67859 * 27 9 8 49 49 H 1.09000 * 109.58422 * 246.15563 * 28 6 4 50 50 H 1.09001 * 109.58358 * 6.43582 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 1.3691 -0.7072 2.2458 6 7 3.2187 -1.3495 1.2025 7 6 3.6618 -2.1558 2.3480 8 6 5.0538 -1.6808 2.7762 9 6 5.9972 -1.7278 1.5722 10 6 7.3762 -1.2936 1.9975 11 8 7.5078 -0.4017 2.8087 12 7 8.4632 -1.8965 1.4766 13 6 8.3176 -2.8465 0.4982 14 1 7.6102 -3.6519 0.6287 15 6 9.0799 -2.7724 -0.6604 16 7 9.2568 -3.8443 -1.4002 17 14 9.8538 -1.1496 -1.1673 18 1 11.2618 -1.1045 -0.6973 19 1 9.8217 -1.0266 -2.6469 20 1 9.0932 -0.0276 -0.5606 21 6 9.7390 -1.5536 1.9335 22 6 10.4446 -2.4286 2.7504 23 6 11.7049 -2.0868 3.1995 24 6 12.2648 -0.8750 2.8374 25 6 11.5653 -0.0017 2.0244 26 6 10.3046 -0.3370 1.5717 27 6 5.4807 -0.7877 0.4806 28 6 4.0936 -1.2526 0.0262 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.7447 1.9322 0.9278 34 1 3.1270 1.4435 -0.0814 35 1 1.6118 1.9793 -0.8466 36 1 3.7065 -3.2061 2.0601 37 1 2.9633 -2.0333 3.1758 38 1 5.4347 -2.3326 3.5625 39 1 4.9907 -0.6586 3.1493 40 1 6.0405 -2.7455 1.1842 41 1 9.7888 -3.7925 -2.2096 42 1 10.0061 -3.3729 3.0374 43 1 12.2537 -2.7663 3.8349 44 1 13.2505 -0.6102 3.1905 45 1 12.0058 0.9435 1.7434 46 1 9.7588 0.3456 0.9372 47 1 5.4135 0.2261 0.8755 48 1 6.1655 -0.8036 -0.3673 49 1 4.1736 -2.2293 -0.4511 50 1 3.6781 -0.5337 -0.6800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195120164.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = -38.621567 kcal Electronic energy + Delta-G solvation = -31394.045181 eV Core-core repulsion = 27386.261033 eV Total energy + Delta-G solvation = -4007.784147 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.45559 -39.73408 -38.10607 -36.70053 -34.93397 -34.63229 -32.56572 -32.18309 -30.90609 -30.43480 -29.23613 -27.31953 -26.14371 -24.94206 -23.77486 -22.76017 -22.16937 -21.99515 -20.45327 -19.17768 -18.58382 -17.87176 -17.33227 -16.47709 -15.90246 -15.82960 -15.61833 -15.17786 -14.78043 -14.56943 -14.24749 -14.01585 -13.90078 -13.75607 -13.38474 -13.24583 -13.11638 -12.90638 -12.73344 -12.58705 -12.50665 -12.29340 -12.15566 -12.06554 -11.86444 -11.49064 -11.28688 -11.12813 -11.11478 -11.04342 -11.00770 -10.97529 -10.70739 -10.36826 -10.18553 -9.83667 -9.57273 -9.28222 -8.85618 -8.49033 -8.34238 -8.20387 -7.77726 -6.62298 -4.37876 1.90474 1.94302 2.67779 3.06210 3.07459 3.16779 3.19219 3.50411 4.05917 4.14686 4.35701 4.42437 4.71399 4.78794 4.87715 4.91386 5.15814 5.19908 5.29599 5.34449 5.41380 5.46438 5.47009 5.52417 5.55536 5.60278 5.63417 5.66709 5.70319 5.77208 5.88226 5.96871 6.02287 6.04798 6.08839 6.10937 6.13436 6.14802 6.24379 6.37975 6.42512 6.55377 6.68519 6.69599 6.87625 7.00008 7.14891 7.27500 7.48524 7.58097 7.96963 8.13104 8.23966 8.80120 9.13417 9.49870 10.45773 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015848 B = 0.003315 C = 0.003117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.413258 B = 8443.287039 C = 8982.040678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.520 3.480 5 O -0.548 6.548 6 N -0.608 5.608 7 C 0.113 3.887 8 C -0.117 4.117 9 C -0.089 4.089 10 C 0.501 3.499 11 O -0.577 6.577 12 N -0.436 5.436 13 C -0.353 4.353 14 H 0.105 0.895 15 C 0.084 3.916 16 N -0.851 5.851 17 Si 0.863 3.137 18 H -0.264 1.264 19 H -0.289 1.289 20 H -0.258 1.258 21 C 0.173 3.827 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.142 4.142 25 C -0.114 4.114 26 C -0.143 4.143 27 C -0.116 4.116 28 C 0.107 3.893 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.277 0.723 42 H 0.123 0.877 43 H 0.118 0.882 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.124 0.876 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.077 0.923 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.009 4.641 -0.181 8.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 C -0.201 4.201 4 C 0.308 3.692 5 O -0.426 6.426 6 N -0.341 5.341 7 C -0.009 4.009 8 C -0.155 4.155 9 C -0.110 4.110 10 C 0.291 3.709 11 O -0.459 6.459 12 N -0.155 5.155 13 C -0.479 4.479 14 H 0.122 0.878 15 C -0.126 4.126 16 N -0.485 5.485 17 Si 0.690 3.310 18 H -0.189 1.189 19 H -0.216 1.216 20 H -0.183 1.183 21 C 0.082 3.918 22 C -0.133 4.133 23 C -0.134 4.134 24 C -0.160 4.160 25 C -0.133 4.133 26 C -0.163 4.163 27 C -0.154 4.154 28 C -0.015 4.015 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.087 0.913 42 H 0.141 0.859 43 H 0.136 0.864 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.142 0.858 47 H 0.085 0.915 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.229 4.949 0.579 8.780 hybrid contribution 0.834 0.519 -0.673 1.191 sum -6.395 5.468 -0.094 8.414 Atomic orbital electron populations 1.21643 0.92665 1.02390 1.02403 1.21329 0.98058 0.97654 0.96775 1.21769 1.01611 0.93811 1.02890 1.20662 0.80513 0.78195 0.89847 1.90653 1.57181 1.61156 1.33633 1.48188 1.18480 1.49487 1.17989 1.21628 0.96002 0.94157 0.89127 1.21780 0.93369 1.03013 0.97380 1.21016 0.91705 1.02294 0.96016 1.20789 0.86641 0.81239 0.82204 1.90580 1.87314 1.31118 1.36856 1.41390 1.01242 1.37273 1.35557 1.18899 1.27914 1.06094 0.94950 0.87782 1.25381 0.95140 0.96629 0.95422 1.69768 1.35957 1.27407 1.15325 0.87144 0.81301 0.85005 0.77516 1.18886 1.21555 1.18321 1.17858 0.87805 0.92735 0.93410 1.21231 0.95073 0.99961 0.96996 1.20935 0.95316 0.96739 1.00450 1.20962 0.99768 0.95011 1.00257 1.20875 0.94663 0.99314 0.98437 1.21604 0.95962 0.97753 1.00962 1.21717 0.95457 0.99021 0.99231 1.21870 0.90163 1.02460 0.87047 0.91525 0.92018 0.92513 0.88940 0.91915 0.91853 0.91408 0.91304 0.89125 0.90853 0.90804 0.87773 0.91313 0.85885 0.86389 0.86697 0.86665 0.85789 0.91543 0.89514 0.90508 0.89556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.78 37.16 0.33 -0.97 16 2 C -0.12 -1.23 2.40 -91.77 -0.22 -1.45 16 3 C -0.14 -1.38 9.02 37.16 0.34 -1.04 16 4 C 0.52 7.32 6.75 -10.99 -0.07 7.25 16 5 O -0.55 -9.53 15.58 5.56 0.09 -9.44 16 6 N -0.61 -8.32 2.97 -172.77 -0.51 -8.83 16 7 C 0.11 1.59 6.44 -3.71 -0.02 1.57 16 8 C -0.12 -1.87 5.02 -26.62 -0.13 -2.00 16 9 C -0.09 -1.57 1.99 -91.73 -0.18 -1.76 16 10 C 0.50 10.96 6.52 -10.99 -0.07 10.89 16 11 O -0.58 -14.01 16.14 5.56 0.09 -13.92 16 12 N -0.44 -10.02 2.03 -58.98 -0.12 -10.14 16 13 C -0.35 -8.50 8.58 -14.93 -0.13 -8.63 16 14 H 0.10 2.58 6.92 -52.49 -0.36 2.21 16 15 C 0.08 2.10 5.35 -17.48 -0.09 2.01 16 16 N -0.85 -22.23 13.96 55.49 0.77 -21.46 16 17 Si 0.86 19.77 24.08 -169.99 -4.09 15.68 16 18 H -0.26 -6.14 6.82 56.52 0.39 -5.76 16 19 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 20 H -0.26 -5.84 5.56 56.52 0.31 -5.52 16 21 C 0.17 3.91 3.42 -83.70 -0.29 3.63 16 22 C -0.11 -2.33 9.91 -39.37 -0.39 -2.72 16 23 C -0.12 -2.03 10.04 -39.61 -0.40 -2.42 16 24 C -0.14 -2.39 10.04 -39.53 -0.40 -2.79 16 25 C -0.11 -2.11 10.04 -39.61 -0.40 -2.51 16 26 C -0.14 -3.11 6.28 -39.37 -0.25 -3.36 16 27 C -0.12 -1.80 5.34 -26.61 -0.14 -1.94 16 28 C 0.11 1.33 6.13 -3.71 -0.02 1.31 16 29 H 0.07 0.73 7.86 -51.93 -0.41 0.32 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.82 6.55 -51.93 -0.34 0.48 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.62 7.41 -51.93 -0.38 0.24 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.09 1.33 7.01 -51.93 -0.36 0.96 16 38 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.07 1.31 7.91 -51.93 -0.41 0.89 16 40 H 0.10 1.87 6.20 -51.93 -0.32 1.54 16 41 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 42 H 0.12 2.43 8.06 -52.49 -0.42 2.01 16 43 H 0.12 1.67 8.06 -52.48 -0.42 1.24 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 46 H 0.12 2.76 5.50 -52.49 -0.29 2.47 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 49 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.09 0.87 4.93 -51.93 -0.26 0.61 16 LS Contribution 390.44 15.07 5.88 5.88 Total: -1.00 -30.49 390.44 -8.31 -38.80 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -7.87 Total: 8.36 kcal Atomic # 6 Polarization: -2.39 SS G_CDS: -2.55 Total: -4.93 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.14 Total: -40.43 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.18 Total: -23.36 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -4.09 Total: 15.68 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.49 -8.31 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195120164.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.181 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds