Wall clock time and date at job start Wed Apr 1 2020 05:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47023 * 2 1 4 4 C 1.50697 * 109.47046 * 119.99964 * 2 1 3 5 5 O 1.21281 * 119.99955 * 354.04858 * 4 2 1 6 6 N 1.34775 * 119.99843 * 174.04825 * 4 2 1 7 7 C 1.42115 * 121.47226 * 179.18568 * 6 4 2 8 8 C 1.56373 * 114.62457 * 276.09594 * 7 6 4 9 9 C 1.56366 * 107.27368 * 322.06131 * 8 7 6 10 10 N 1.42138 * 114.59194 * 322.05901 * 9 8 7 11 11 C 1.34775 * 121.48784 * 276.15417 * 10 9 8 12 12 O 1.21592 * 120.00220 * 172.44731 * 11 10 9 13 13 C 1.47643 * 120.00276 * 352.44396 * 11 10 9 14 14 C 1.40013 * 119.89470 * 18.91261 * 13 11 10 15 15 C 1.36314 * 120.10643 * 179.75844 * 14 13 11 16 16 C 1.40892 * 119.89128 * 0.51946 * 15 14 13 17 17 C 1.41103 * 120.10340 * 179.71209 * 16 15 14 18 18 H 1.08001 * 120.00389 * 209.19423 * 17 16 15 19 19 C 1.40226 * 120.00098 * 29.19243 * 17 16 15 20 20 N 1.30655 * 119.99995 * 10.62852 * 19 17 16 21 21 Si 1.86796 * 120.00410 * 190.61893 * 19 17 16 22 22 H 1.48503 * 109.46724 * 60.00596 * 21 19 17 23 23 H 1.48502 * 109.47468 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47417 * 300.00568 * 21 19 17 25 25 C 1.40886 * 119.79113 * 359.73708 * 16 15 14 26 26 C 1.36316 * 119.89677 * 0.02562 * 25 16 15 27 27 C 1.48552 * 117.03618 * 96.17367 * 10 9 8 28 28 C 1.45863 * 109.61535 * 279.51488 * 27 10 9 29 29 H 1.09002 * 109.47365 * 299.99912 * 1 2 3 30 30 H 1.09001 * 109.46939 * 60.00215 * 1 2 3 31 31 H 1.09004 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47040 * 240.00439 * 2 1 3 33 33 H 1.09000 * 109.47239 * 320.29824 * 3 2 1 34 34 H 1.09005 * 109.46982 * 80.29101 * 3 2 1 35 35 H 1.08998 * 109.47223 * 200.29576 * 3 2 1 36 36 H 1.09005 * 108.45019 * 37.42904 * 7 6 4 37 37 H 1.08996 * 108.45106 * 154.76588 * 7 6 4 38 38 H 1.09006 * 109.89405 * 81.50442 * 8 7 6 39 39 H 1.09000 * 109.89261 * 202.53567 * 8 7 6 40 40 H 1.09000 * 108.45214 * 83.39279 * 9 8 7 41 41 H 1.08995 * 108.44968 * 200.72954 * 9 8 7 42 42 H 1.08003 * 119.94470 * 0.02712 * 14 13 11 43 43 H 1.08000 * 120.05784 * 180.23076 * 15 14 13 44 44 H 0.96992 * 120.00105 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.04962 * 179.97438 * 25 16 15 46 46 H 1.07995 * 119.94745 * 179.97438 * 26 25 16 47 47 H 1.09004 * 109.43962 * 159.48047 * 27 10 9 48 48 H 1.08999 * 109.44168 * 39.55375 * 27 10 9 49 49 H 1.08999 * 109.44360 * 173.99954 * 28 27 10 50 50 H 1.09004 * 109.44603 * 293.93019 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2495 -1.0760 2.0816 6 7 3.3515 -0.9394 1.3850 7 6 3.8610 -1.5911 2.5405 8 6 4.0963 -0.6514 3.7681 9 6 4.6399 0.7067 3.2158 10 7 5.5392 0.5829 2.1220 11 6 6.8516 0.3437 2.3134 12 8 7.5714 0.1065 1.3625 13 6 7.4156 0.3697 3.6776 14 6 6.5685 0.2449 4.7854 15 6 7.0851 0.2634 6.0467 16 6 8.4727 0.4194 6.2350 17 6 9.0115 0.4453 7.5388 18 1 9.9137 1.0040 7.7393 19 6 8.3755 -0.2544 8.5743 20 7 7.4120 -1.0933 8.3004 21 14 8.9059 0.0125 10.3454 22 1 8.7176 1.4401 10.7086 23 1 8.0841 -0.8394 11.2421 24 1 10.3380 -0.3511 10.4934 25 6 9.3203 0.5500 5.1173 26 6 8.7951 0.5255 3.8596 27 6 4.9682 0.7294 0.7585 28 6 4.3370 -0.5221 0.3548 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.4157 2.0486 -0.6565 34 1 1.9977 1.8428 1.0130 35 1 3.0698 1.4638 -0.3565 36 1 3.1595 -2.3724 2.8335 37 1 4.8085 -2.0631 2.2808 38 1 3.1564 -0.4879 4.2956 39 1 4.8269 -1.0982 4.4425 40 1 3.7923 1.3143 2.8989 41 1 5.1503 1.2286 4.0251 42 1 5.5045 0.1294 4.6402 43 1 6.4314 0.1633 6.9006 44 1 6.9718 -1.5770 9.0166 45 1 10.3846 0.6703 5.2567 46 1 9.4441 0.6260 3.0023 47 1 5.7644 0.9772 0.0565 48 1 4.2249 1.5266 0.7602 49 1 3.8276 -0.3806 -0.5984 50 1 5.0986 -1.2946 0.2480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270307171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:38 Heat of formation + Delta-G solvation = 0.259623 kcal Electronic energy + Delta-G solvation = -31558.399906 eV Core-core repulsion = 27552.301774 eV Total energy + Delta-G solvation = -4006.098132 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.05908 -39.50265 -37.38155 -36.76480 -35.15949 -34.61094 -33.83169 -32.80055 -30.06810 -29.53775 -28.82262 -27.52458 -26.45088 -25.90257 -23.78063 -23.35341 -21.75667 -21.27039 -20.85290 -18.85139 -18.49658 -17.60012 -17.53796 -16.84068 -16.18361 -15.92847 -15.68358 -15.28325 -15.01110 -14.86589 -14.33412 -13.93073 -13.77062 -13.55418 -13.34816 -13.20405 -13.04461 -12.77459 -12.65550 -12.61481 -12.29426 -12.09056 -11.89421 -11.67371 -11.61542 -11.52976 -11.38402 -11.28935 -11.24161 -11.13770 -11.02000 -10.79807 -10.71082 -10.50648 -10.00715 -9.76379 -9.45330 -9.25258 -8.92937 -8.74154 -8.28931 -7.65627 -7.49041 -6.96077 -4.61056 2.20803 2.53334 2.91860 2.93992 2.95572 2.98239 3.00799 3.41644 3.73474 3.78781 4.19507 4.52906 4.57053 4.68360 4.74464 4.95787 5.00121 5.06779 5.13742 5.22388 5.32052 5.38422 5.43130 5.46148 5.52913 5.53776 5.58213 5.61855 5.74915 5.85710 5.88150 5.98645 6.01833 6.05039 6.10780 6.14574 6.23935 6.28840 6.59099 6.76650 6.83934 6.86086 7.04205 7.13373 7.35336 7.45368 7.61097 7.78964 7.86735 8.06415 8.10330 8.13033 8.41883 8.65049 8.76208 8.91436 9.95638 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002920 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.811779 B = 9587.458845 C =10685.003429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C -0.154 4.154 4 C 0.518 3.482 5 O -0.537 6.537 6 N -0.596 5.596 7 C 0.117 3.883 8 C -0.171 4.171 9 C 0.090 3.910 10 N -0.605 5.605 11 C 0.577 3.423 12 O -0.571 6.571 13 C -0.276 4.276 14 C -0.124 4.124 15 C -0.172 4.172 16 C 0.128 3.872 17 C -0.447 4.447 18 H 0.082 0.918 19 C 0.073 3.927 20 N -0.781 5.781 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.235 4.235 26 C -0.027 4.027 27 C 0.084 3.916 28 C 0.089 3.911 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.102 0.898 40 H 0.058 0.942 41 H 0.107 0.893 42 H 0.152 0.848 43 H 0.121 0.879 44 H 0.286 0.714 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.096 0.904 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.930 2.775 -11.993 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.136 4.136 3 C -0.212 4.212 4 C 0.307 3.693 5 O -0.414 6.414 6 N -0.328 5.328 7 C -0.008 4.008 8 C -0.211 4.211 9 C -0.035 4.035 10 N -0.338 5.338 11 C 0.374 3.626 12 O -0.452 6.452 13 C -0.280 4.280 14 C -0.141 4.141 15 C -0.192 4.192 16 C 0.125 3.875 17 C -0.475 4.475 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.405 5.405 21 Si 0.739 3.261 22 H -0.186 1.186 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.254 4.254 26 C -0.046 4.046 27 C -0.039 4.039 28 C -0.034 4.034 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.077 0.923 41 H 0.124 0.876 42 H 0.168 0.832 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.115 0.885 48 H 0.100 0.900 49 H 0.108 0.892 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.125 2.270 -11.923 16.464 hybrid contribution 0.344 -0.102 0.900 0.969 sum -10.780 2.168 -11.023 15.570 Atomic orbital electron populations 1.21623 0.92497 1.02664 1.02112 1.21286 0.98243 0.97320 0.96720 1.22123 1.01912 0.94127 1.03007 1.20646 0.81429 0.78983 0.88265 1.90693 1.54819 1.51436 1.44454 1.47281 1.05932 1.59286 1.20256 1.20956 0.99328 0.94673 0.85828 1.24045 1.02171 0.96912 0.97977 1.21773 0.93350 0.96671 0.91706 1.47017 1.07586 1.73683 1.05475 1.18702 0.79792 0.74211 0.89849 1.90632 1.59361 1.51034 1.44183 1.18843 0.94370 1.24460 0.90356 1.22470 1.00744 0.97930 0.92963 1.21097 0.95427 1.06942 0.95702 1.17846 0.91788 0.85406 0.92440 1.19781 1.09177 1.25885 0.92706 0.90014 1.26049 0.93640 0.93114 1.01911 1.69697 1.18069 1.17165 1.35573 0.86239 0.79803 0.79653 0.80390 1.18616 1.20084 1.18783 1.20761 0.98104 1.14287 0.92263 1.20337 0.93059 0.94976 0.96251 1.21183 0.98949 0.97407 0.86363 1.21247 0.92179 0.98732 0.91205 0.91782 0.92114 0.92201 0.88828 0.91256 0.91982 0.91069 0.91259 0.90968 0.90321 0.87963 0.92333 0.87585 0.83186 0.86094 0.90317 0.88485 0.88454 0.88548 0.90018 0.89165 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.12 8.41 37.16 0.31 -0.81 16 2 C -0.11 -0.99 2.43 -91.77 -0.22 -1.21 16 3 C -0.15 -1.11 7.95 37.16 0.30 -0.82 16 4 C 0.52 6.45 6.91 -10.99 -0.08 6.37 16 5 O -0.54 -8.66 15.73 5.56 0.09 -8.58 16 6 N -0.60 -7.23 2.24 -177.14 -0.40 -7.63 16 7 C 0.12 1.64 5.14 -4.52 -0.02 1.61 16 8 C -0.17 -2.50 6.13 -23.11 -0.14 -2.64 16 9 C 0.09 1.32 4.59 -4.52 -0.02 1.30 16 10 N -0.61 -9.43 2.24 -182.32 -0.41 -9.84 16 11 C 0.58 11.53 7.59 -12.42 -0.09 11.43 16 12 O -0.57 -12.63 16.18 5.28 0.09 -12.55 16 13 C -0.28 -6.06 5.78 -104.73 -0.61 -6.67 16 14 C -0.12 -2.62 6.90 -39.61 -0.27 -2.90 16 15 C -0.17 -4.12 8.59 -39.27 -0.34 -4.46 16 16 C 0.13 3.23 5.55 -106.80 -0.59 2.63 16 17 C -0.45 -11.09 9.05 -37.75 -0.34 -11.43 16 18 H 0.08 1.94 7.87 -52.49 -0.41 1.52 16 19 C 0.07 1.70 5.25 -17.31 -0.09 1.61 16 20 N -0.78 -18.73 10.85 55.56 0.60 -18.13 16 21 Si 0.92 17.45 29.57 -169.99 -5.03 12.42 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 23 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 C -0.23 -5.61 9.73 -39.27 -0.38 -5.99 16 26 C -0.03 -0.62 9.52 -39.61 -0.38 -1.00 16 27 C 0.08 0.99 5.22 -6.29 -0.03 0.95 16 28 C 0.09 0.93 5.11 -6.29 -0.03 0.90 16 29 H 0.06 0.63 8.03 -51.93 -0.42 0.21 16 30 H 0.06 0.38 8.13 -51.93 -0.42 -0.04 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.64 7.20 -51.93 -0.37 0.27 16 33 H 0.07 0.40 7.97 -51.93 -0.41 -0.02 16 34 H 0.06 0.53 7.96 -51.93 -0.41 0.12 16 35 H 0.07 0.45 4.40 -51.93 -0.23 0.23 16 36 H 0.07 1.01 7.61 -51.93 -0.39 0.61 16 37 H 0.07 1.07 7.62 -51.93 -0.40 0.67 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.10 1.66 5.84 -51.93 -0.30 1.36 16 40 H 0.06 0.77 7.62 -51.93 -0.40 0.37 16 41 H 0.11 1.73 4.71 -51.93 -0.24 1.49 16 42 H 0.15 2.74 1.53 -57.51 -0.09 2.65 16 43 H 0.12 2.95 6.23 -52.49 -0.33 2.63 16 44 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 45 H 0.10 2.18 8.06 -52.49 -0.42 1.75 16 46 H 0.10 2.16 7.75 -52.49 -0.41 1.75 16 47 H 0.10 1.18 7.42 -51.93 -0.39 0.80 16 48 H 0.08 0.80 4.83 -51.93 -0.25 0.55 16 49 H 0.09 0.65 5.51 -51.93 -0.29 0.36 16 50 H 0.09 1.01 7.80 -51.93 -0.40 0.60 16 LS Contribution 376.67 15.07 5.68 5.68 Total: -1.00 -29.59 376.67 -9.39 -38.98 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -6.97 Total: 10.74 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: -3.04 Total: -11.10 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.20 Total: -35.60 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: 0.17 Total: -21.12 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.59 -9.39 -38.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270307171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.240 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds