Wall clock time and date at job start Wed Apr 1 2020 05:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47023 * 2 1 4 4 C 1.50697 * 109.47046 * 119.99964 * 2 1 3 5 5 O 1.21281 * 119.99955 * 354.04858 * 4 2 1 6 6 N 1.34775 * 119.99843 * 174.04825 * 4 2 1 7 7 C 1.42115 * 121.47226 * 179.18568 * 6 4 2 8 8 C 1.56373 * 114.62457 * 276.09594 * 7 6 4 9 9 C 1.56366 * 107.27368 * 322.06131 * 8 7 6 10 10 N 1.42138 * 114.59194 * 322.05901 * 9 8 7 11 11 C 1.34775 * 121.48784 * 276.15417 * 10 9 8 12 12 O 1.21592 * 120.00220 * 172.44731 * 11 10 9 13 13 C 1.47643 * 120.00276 * 352.44396 * 11 10 9 14 14 C 1.40013 * 119.89470 * 18.91261 * 13 11 10 15 15 C 1.36314 * 120.10643 * 179.75844 * 14 13 11 16 16 C 1.40892 * 119.89128 * 0.51946 * 15 14 13 17 17 C 1.41103 * 120.10340 * 179.71209 * 16 15 14 18 18 H 1.08001 * 120.00389 * 209.19423 * 17 16 15 19 19 C 1.40226 * 120.00098 * 29.19243 * 17 16 15 20 20 N 1.30655 * 119.99995 * 10.62852 * 19 17 16 21 21 Si 1.86796 * 120.00410 * 190.61893 * 19 17 16 22 22 H 1.48503 * 109.46724 * 60.00596 * 21 19 17 23 23 H 1.48502 * 109.47468 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47417 * 300.00568 * 21 19 17 25 25 C 1.40886 * 119.79113 * 359.73708 * 16 15 14 26 26 C 1.36316 * 119.89677 * 0.02562 * 25 16 15 27 27 C 1.48552 * 117.03618 * 96.17367 * 10 9 8 28 28 C 1.45863 * 109.61535 * 279.51488 * 27 10 9 29 29 H 1.09002 * 109.47365 * 299.99912 * 1 2 3 30 30 H 1.09001 * 109.46939 * 60.00215 * 1 2 3 31 31 H 1.09004 * 109.46923 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47040 * 240.00439 * 2 1 3 33 33 H 1.09000 * 109.47239 * 320.29824 * 3 2 1 34 34 H 1.09005 * 109.46982 * 80.29101 * 3 2 1 35 35 H 1.08998 * 109.47223 * 200.29576 * 3 2 1 36 36 H 1.09005 * 108.45019 * 37.42904 * 7 6 4 37 37 H 1.08996 * 108.45106 * 154.76588 * 7 6 4 38 38 H 1.09006 * 109.89405 * 81.50442 * 8 7 6 39 39 H 1.09000 * 109.89261 * 202.53567 * 8 7 6 40 40 H 1.09000 * 108.45214 * 83.39279 * 9 8 7 41 41 H 1.08995 * 108.44968 * 200.72954 * 9 8 7 42 42 H 1.08003 * 119.94470 * 0.02712 * 14 13 11 43 43 H 1.08000 * 120.05784 * 180.23076 * 15 14 13 44 44 H 0.96992 * 120.00105 * 180.02562 * 20 19 17 45 45 H 1.08002 * 120.04962 * 179.97438 * 25 16 15 46 46 H 1.07995 * 119.94745 * 179.97438 * 26 25 16 47 47 H 1.09004 * 109.43962 * 159.48047 * 27 10 9 48 48 H 1.08999 * 109.44168 * 39.55375 * 27 10 9 49 49 H 1.08999 * 109.44360 * 173.99954 * 28 27 10 50 50 H 1.09004 * 109.44603 * 293.93019 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2495 -1.0760 2.0816 6 7 3.3515 -0.9394 1.3850 7 6 3.8610 -1.5911 2.5405 8 6 4.0963 -0.6514 3.7681 9 6 4.6399 0.7067 3.2158 10 7 5.5392 0.5829 2.1220 11 6 6.8516 0.3437 2.3134 12 8 7.5714 0.1065 1.3625 13 6 7.4156 0.3697 3.6776 14 6 6.5685 0.2449 4.7854 15 6 7.0851 0.2634 6.0467 16 6 8.4727 0.4194 6.2350 17 6 9.0115 0.4453 7.5388 18 1 9.9137 1.0040 7.7393 19 6 8.3755 -0.2544 8.5743 20 7 7.4120 -1.0933 8.3004 21 14 8.9059 0.0125 10.3454 22 1 8.7176 1.4401 10.7086 23 1 8.0841 -0.8394 11.2421 24 1 10.3380 -0.3511 10.4934 25 6 9.3203 0.5500 5.1173 26 6 8.7951 0.5255 3.8596 27 6 4.9682 0.7294 0.7585 28 6 4.3370 -0.5221 0.3548 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.4157 2.0486 -0.6565 34 1 1.9977 1.8428 1.0130 35 1 3.0698 1.4638 -0.3565 36 1 3.1595 -2.3724 2.8335 37 1 4.8085 -2.0631 2.2808 38 1 3.1564 -0.4879 4.2956 39 1 4.8269 -1.0982 4.4425 40 1 3.7923 1.3143 2.8989 41 1 5.1503 1.2286 4.0251 42 1 5.5045 0.1294 4.6402 43 1 6.4314 0.1633 6.9006 44 1 6.9718 -1.5770 9.0166 45 1 10.3846 0.6703 5.2567 46 1 9.4441 0.6260 3.0023 47 1 5.7644 0.9772 0.0565 48 1 4.2249 1.5266 0.7602 49 1 3.8276 -0.3806 -0.5984 50 1 5.0986 -1.2946 0.2480 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270307171.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:36 Heat of formation + Delta-G solvation = -14.878029 kcal Electronic energy + Delta-G solvation = -31559.056324 eV Core-core repulsion = 27552.301774 eV Total energy + Delta-G solvation = -4006.754550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.22310 -40.81508 -39.01052 -38.17378 -36.29134 -35.61779 -35.47799 -33.98099 -31.77663 -31.27735 -30.06169 -28.24219 -27.68619 -27.45610 -24.75458 -24.66982 -23.00527 -22.89544 -22.34996 -20.20852 -19.55432 -19.37042 -18.51222 -18.11022 -17.60541 -17.24558 -16.93546 -16.64061 -16.27070 -16.13688 -15.57742 -15.23477 -15.12817 -14.86588 -14.57053 -14.44888 -14.37198 -14.26129 -13.74163 -13.61264 -13.36070 -13.32240 -13.23688 -12.97028 -12.86098 -12.82740 -12.73647 -12.57403 -12.43739 -12.35060 -12.17325 -11.98700 -11.88866 -11.77270 -11.70928 -11.17236 -10.99961 -10.73424 -10.53095 -9.90290 -9.60069 -9.45578 -9.30670 -8.71792 -6.48502 0.46235 1.14606 1.38398 1.43138 1.50462 1.58554 1.92248 2.08278 2.17255 2.17910 2.76989 3.36505 3.64020 3.73812 3.78492 3.89793 3.95333 4.06287 4.09157 4.13406 4.26441 4.31493 4.37323 4.44279 4.47476 4.51623 4.66736 4.70600 4.76368 4.78782 4.84959 4.86581 4.92793 4.95112 4.96463 4.98854 5.05553 5.10161 5.18553 5.32107 5.35769 5.35870 5.55033 5.58550 5.64379 5.83115 5.97253 6.02413 6.25933 6.39776 6.55783 6.57954 6.80613 6.91749 7.16025 7.34396 8.22408 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.017652 B = 0.002920 C = 0.002620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.811779 B = 9587.458845 C =10685.003429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.153 4.153 4 C 0.514 3.486 5 O -0.580 6.580 6 N -0.594 5.594 7 C 0.123 3.877 8 C -0.167 4.167 9 C 0.092 3.908 10 N -0.596 5.596 11 C 0.579 3.421 12 O -0.593 6.593 13 C -0.284 4.284 14 C -0.112 4.112 15 C -0.193 4.193 16 C 0.101 3.899 17 C -0.482 4.482 18 H 0.082 0.918 19 C 0.035 3.965 20 N -0.810 5.810 21 Si 0.987 3.013 22 H -0.258 1.258 23 H -0.266 1.266 24 H -0.261 1.261 25 C -0.250 4.250 26 C -0.037 4.037 27 C 0.080 3.920 28 C 0.091 3.909 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.181 0.819 43 H 0.111 0.889 44 H 0.293 0.707 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.111 0.889 49 H 0.135 0.865 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 3.683 -13.825 18.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.130 4.130 3 C -0.210 4.210 4 C 0.305 3.695 5 O -0.459 6.459 6 N -0.325 5.325 7 C -0.003 4.003 8 C -0.207 4.207 9 C -0.033 4.033 10 N -0.327 5.327 11 C 0.374 3.626 12 O -0.477 6.477 13 C -0.288 4.288 14 C -0.129 4.129 15 C -0.212 4.212 16 C 0.098 3.902 17 C -0.510 4.510 18 H 0.100 0.900 19 C -0.182 4.182 20 N -0.434 5.434 21 Si 0.807 3.193 22 H -0.182 1.182 23 H -0.190 1.190 24 H -0.185 1.185 25 C -0.269 4.269 26 C -0.057 4.057 27 C -0.041 4.041 28 C -0.031 4.031 29 H 0.064 0.936 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.109 0.891 34 H 0.066 0.934 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.197 0.803 43 H 0.129 0.871 44 H 0.104 0.896 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.129 0.871 49 H 0.152 0.848 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.695 3.192 -13.797 19.019 hybrid contribution 0.727 -0.396 1.323 1.561 sum -11.968 2.796 -12.474 17.511 Atomic orbital electron populations 1.21634 0.92574 1.02008 1.02600 1.21377 0.98147 0.98045 0.95404 1.22137 1.03028 0.93032 1.02771 1.21442 0.80828 0.78240 0.88986 1.90681 1.55792 1.53180 1.46284 1.47354 1.06425 1.58924 1.19840 1.20770 0.98657 0.94476 0.86404 1.23920 1.01735 0.96885 0.98111 1.21723 0.93671 0.96783 0.91163 1.46959 1.06213 1.71797 1.07688 1.18355 0.81283 0.74448 0.88489 1.90616 1.60446 1.52246 1.44369 1.19229 0.94294 1.23230 0.92078 1.22856 1.02313 0.95901 0.91868 1.21107 0.95070 1.08636 0.96433 1.18189 0.92620 0.86231 0.93188 1.20029 1.10071 1.27315 0.93556 0.90020 1.26866 0.93382 0.92206 1.05729 1.69744 1.18886 1.17641 1.37138 0.85165 0.79409 0.79703 0.74999 1.18169 1.19010 1.18495 1.20903 0.98448 1.15038 0.92561 1.20506 0.93966 0.95110 0.96071 1.21543 0.99574 0.99149 0.83801 1.21349 0.91909 0.97446 0.92392 0.93580 0.89294 0.93505 0.86032 0.89087 0.93434 0.89855 0.92147 0.91980 0.89780 0.89984 0.89690 0.89267 0.80265 0.87118 0.89563 0.88001 0.87893 0.88319 0.87135 0.84751 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.41 71.98 0.61 -1.26 16 2 C -0.11 -1.45 2.43 -11.54 -0.03 -1.48 16 3 C -0.15 -1.49 7.95 71.98 0.57 -0.92 16 4 C 0.51 11.59 6.91 87.66 0.61 12.20 16 5 O -0.58 -18.17 15.73 -3.03 -0.05 -18.21 16 6 N -0.59 -13.07 2.24 -832.72 -1.87 -14.94 16 7 C 0.12 3.35 5.14 88.36 0.45 3.80 16 8 C -0.17 -4.79 6.13 32.94 0.20 -4.58 16 9 C 0.09 2.55 4.59 88.35 0.41 2.96 16 10 N -0.60 -17.52 2.24 -848.99 -1.90 -19.43 16 11 C 0.58 22.73 7.59 86.73 0.66 23.39 16 12 O -0.59 -25.81 16.18 -4.01 -0.06 -25.88 16 13 C -0.28 -12.65 5.78 -19.93 -0.12 -12.77 16 14 C -0.11 -4.88 6.90 22.25 0.15 -4.73 16 15 C -0.19 -9.60 8.59 22.47 0.19 -9.40 16 16 C 0.10 5.28 5.55 -21.28 -0.12 5.17 16 17 C -0.48 -24.78 9.05 23.46 0.21 -24.57 16 18 H 0.08 4.03 7.87 -2.91 -0.02 4.01 16 19 C 0.04 1.69 5.25 85.35 0.45 2.13 16 20 N -0.81 -39.83 10.85 21.87 0.24 -39.60 16 21 Si 0.99 35.98 29.57 68.60 2.03 38.01 16 22 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 23 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 24 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 25 C -0.25 -12.44 9.73 22.47 0.22 -12.22 16 26 C -0.04 -1.76 9.52 22.25 0.21 -1.55 16 27 C 0.08 1.62 5.22 83.80 0.44 2.06 16 28 C 0.09 1.58 5.11 83.80 0.43 2.01 16 29 H 0.04 0.82 8.03 -2.39 -0.02 0.80 16 30 H 0.09 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.12 1.01 7.20 -2.39 -0.02 0.99 16 33 H 0.09 0.56 7.97 -2.39 -0.02 0.54 16 34 H 0.05 0.63 7.96 -2.38 -0.02 0.61 16 35 H 0.08 0.59 4.40 -2.39 -0.01 0.58 16 36 H 0.06 1.76 7.61 -2.38 -0.02 1.74 16 37 H 0.06 1.81 7.62 -2.39 -0.02 1.80 16 38 H 0.08 2.35 8.14 -2.38 -0.02 2.33 16 39 H 0.08 2.72 5.84 -2.39 -0.01 2.70 16 40 H 0.08 1.99 7.62 -2.39 -0.02 1.97 16 41 H 0.09 2.85 4.71 -2.39 -0.01 2.84 16 42 H 0.18 6.62 1.53 -7.63 -0.01 6.61 16 43 H 0.11 5.66 6.23 -2.91 -0.02 5.64 16 44 H 0.29 13.01 8.29 -92.71 -0.77 12.24 16 45 H 0.10 4.79 8.06 -2.91 -0.02 4.76 16 46 H 0.10 4.66 7.75 -2.91 -0.02 4.64 16 47 H 0.10 2.07 7.42 -2.38 -0.02 2.05 16 48 H 0.11 1.64 4.83 -2.39 -0.01 1.63 16 49 H 0.13 1.21 5.51 -2.39 -0.01 1.20 16 50 H 0.07 1.54 7.80 -2.39 -0.02 1.52 16 Total: -1.00 -67.50 376.67 4.90 -62.60 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.97 Total: 37.20 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 5.55 Total: -19.77 kcal Atomic # 7 Polarization: -70.42 SS G_CDS: -3.53 Total: -73.96 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.11 Total: -44.09 kcal Atomic # 14 Polarization: 35.98 SS G_CDS: 2.03 Total: 38.01 kcal Total: -67.50 4.90 -62.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270307171.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.723 kcal (2) G-P(sol) polarization free energy of solvation -67.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds