Wall clock time and date at job start Wed Apr 1 2020 03:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47676 * 23.49721 * 3 2 1 5 5 C 1.36937 * 120.00028 * 268.79201 * 4 3 2 6 6 H 1.08004 * 120.00000 * 322.08800 * 5 4 3 7 7 C 1.38812 * 120.00215 * 142.07938 * 5 4 3 8 8 N 1.31618 * 119.99942 * 156.94995 * 7 5 4 9 9 Si 1.86808 * 119.99913 * 336.96143 * 7 5 4 10 10 H 1.48501 * 109.47208 * 95.69428 * 9 7 5 11 11 H 1.48501 * 109.46698 * 215.69285 * 9 7 5 12 12 H 1.48496 * 109.47018 * 335.69057 * 9 7 5 13 13 C 1.46496 * 119.99991 * 88.78643 * 4 3 2 14 14 C 1.50700 * 109.47241 * 90.00420 * 13 4 3 15 15 O 1.21284 * 119.99859 * 359.97438 * 14 13 4 16 16 N 1.34772 * 120.00341 * 180.02562 * 14 13 4 17 17 C 1.46495 * 120.00321 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47254 * 34.98955 * 17 16 14 19 19 C 1.50697 * 109.47682 * 154.99994 * 17 16 14 20 20 C 1.38266 * 119.94535 * 39.71709 * 19 17 16 21 21 C 1.38142 * 120.05740 * 179.72709 * 20 19 17 22 22 C 1.38733 * 119.94045 * 0.55447 * 21 20 19 23 23 O 1.35905 * 120.05256 * 179.74519 * 22 21 20 24 24 C 1.42897 * 117.00015 * 359.97438 * 23 22 21 25 25 C 1.38731 * 119.89189 * 359.72529 * 22 21 20 26 26 C 1.38144 * 119.94436 * 359.97438 * 25 22 21 27 27 C 1.53009 * 109.46994 * 274.99732 * 17 16 14 28 28 C 1.53004 * 109.47030 * 59.99784 * 27 17 16 29 29 C 1.52994 * 109.47094 * 179.97438 * 27 17 16 30 30 H 4.40647 * 5.51407 * 180.02562 * 4 1 2 31 31 H 1.08998 * 109.46865 * 263.49410 * 3 2 1 32 32 H 1.09005 * 109.47109 * 143.49590 * 3 2 1 33 33 H 0.97004 * 119.99771 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47476 * 330.00542 * 13 4 3 35 35 H 1.09004 * 109.47634 * 210.00410 * 13 4 3 36 36 H 0.96999 * 119.99763 * 359.97438 * 16 14 13 37 37 H 1.07997 * 119.96981 * 0.02562 * 20 19 17 38 38 H 1.07996 * 120.03079 * 180.27839 * 21 20 19 39 39 H 1.08997 * 109.47128 * 300.00017 * 24 23 22 40 40 H 1.09003 * 109.47363 * 59.99944 * 24 23 22 41 41 H 1.09001 * 109.46879 * 179.97438 * 24 23 22 42 42 H 1.08000 * 120.02962 * 179.97438 * 25 22 21 43 43 H 1.07997 * 119.97684 * 180.02562 * 26 25 22 44 44 H 1.08996 * 109.46845 * 299.99984 * 27 17 16 45 45 H 1.09004 * 109.47136 * 59.99728 * 28 27 17 46 46 H 1.08994 * 109.47325 * 180.02562 * 28 27 17 47 47 H 1.09002 * 109.47039 * 300.00506 * 28 27 17 48 48 H 1.09001 * 109.47406 * 60.00029 * 29 27 17 49 49 H 1.09006 * 109.47066 * 179.97438 * 29 27 17 50 50 H 1.08996 * 109.47466 * 299.99854 * 29 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.2658 -0.5507 5 6 3.3874 -2.3227 0.2826 6 1 3.8226 -2.1510 1.2561 7 6 3.0836 -3.6148 -0.1237 8 7 3.7037 -4.6393 0.4225 9 14 1.7951 -3.8996 -1.4460 10 1 2.4620 -4.0365 -2.7657 11 1 1.0399 -5.1415 -1.1418 12 1 0.8592 -2.7472 -1.4814 13 6 3.3540 -1.4015 -1.9928 14 6 4.7681 -1.0011 -2.3261 15 8 5.5189 -0.6378 -1.4457 16 7 5.1981 -1.0459 -3.6026 17 6 6.5729 -0.6573 -3.9265 18 1 7.2360 -0.9565 -3.1147 19 6 7.0004 -1.3380 -5.2012 20 6 6.1080 -1.4626 -6.2499 21 6 6.4992 -2.0812 -7.4215 22 6 7.7852 -2.5878 -7.5411 23 8 8.1708 -3.2014 -8.6908 24 6 7.2002 -3.2903 -9.7358 25 6 8.6769 -2.4667 -6.4853 26 6 8.2828 -1.8417 -5.3180 27 6 6.6442 0.8601 -4.1101 28 6 6.2102 1.5513 -2.8159 29 6 8.0802 1.2660 -4.4477 30 1 -1.0498 -0.0003 -0.0003 31 1 3.0092 0.1173 1.0210 32 1 3.0090 0.8269 -0.6114 33 1 3.4917 -5.5422 0.1383 34 1 2.6579 -0.7559 -2.5284 35 1 3.1902 -2.4375 -2.2894 36 1 4.5975 -1.3362 -4.3068 37 1 5.1058 -1.0718 -6.1547 38 1 5.8032 -2.1743 -8.2420 39 1 6.3347 -3.8499 -9.3812 40 1 6.8892 -2.2875 -10.0290 41 1 7.6365 -3.8006 -10.5944 42 1 9.6784 -2.8607 -6.5758 43 1 8.9768 -1.7468 -4.4959 44 1 5.9812 1.1593 -4.9218 45 1 6.8732 1.2519 -2.0041 46 1 6.2605 2.6322 -2.9467 47 1 5.1873 1.2620 -2.5749 48 1 8.3898 0.7736 -5.3695 49 1 8.1308 2.3469 -4.5789 50 1 8.7429 0.9668 -3.6357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281229101.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:35 Heat of formation + Delta-G solvation = 36.482004 kcal Electronic energy + Delta-G solvation = -30644.151729 eV Core-core repulsion = 26639.624317 eV Total energy + Delta-G solvation = -4004.527412 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -40.56552 -39.48331 -37.92509 -36.19584 -35.28413 -33.06265 -32.51473 -31.31031 -31.20775 -30.56892 -28.20216 -27.56600 -26.74683 -26.24398 -25.07176 -22.98265 -21.89269 -21.55822 -20.19346 -19.68468 -18.42678 -17.55461 -17.32911 -16.60487 -16.16309 -15.98457 -15.78598 -15.59451 -15.24455 -14.83369 -14.57161 -14.21048 -13.90961 -13.73482 -13.59612 -13.41264 -13.14420 -13.08273 -12.74487 -12.64346 -12.37346 -12.27306 -12.21505 -11.95440 -11.87736 -11.62320 -11.37645 -11.25092 -10.99636 -10.98657 -10.69088 -10.65703 -10.57122 -10.19374 -9.74891 -9.68584 -9.36237 -9.16059 -9.13257 -8.58374 -8.53245 -8.22668 -7.03788 -6.04731 -3.47755 1.18713 1.24051 3.03762 3.18448 3.34522 3.40799 3.45838 3.50986 3.56547 3.59061 3.78281 4.44731 4.56764 4.61347 4.69920 4.82004 4.85273 4.99608 5.04893 5.10923 5.14601 5.15474 5.20954 5.29511 5.32742 5.37833 5.47708 5.57326 5.74744 5.80015 5.83387 5.91200 5.95034 6.02556 6.06729 6.11249 6.13282 6.18758 6.21067 6.21509 6.37834 6.50762 6.53493 6.58976 6.68912 6.70383 6.96840 7.17363 7.85724 8.07739 8.31703 8.39612 8.82271 9.03420 9.61445 9.96394 11.10230 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.003272 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.998735 B = 8554.596359 C = 9706.689275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.166 4.166 3 C 0.245 3.755 4 N -0.569 5.569 5 C -0.262 4.262 6 H 0.084 0.916 7 C 0.039 3.961 8 N -0.890 5.890 9 Si 0.862 3.138 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.261 1.261 13 C 0.118 3.882 14 C 0.491 3.509 15 O -0.509 6.509 16 N -0.741 5.741 17 C 0.193 3.807 18 H 0.094 0.906 19 C -0.115 4.115 20 C -0.074 4.074 21 C -0.204 4.204 22 C 0.121 3.879 23 O -0.320 6.320 24 C 0.028 3.972 25 C -0.148 4.148 26 C -0.066 4.066 27 C -0.097 4.097 28 C -0.138 4.138 29 C -0.145 4.145 30 H 0.203 0.797 31 H 0.083 0.917 32 H 0.066 0.934 33 H 0.264 0.736 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.391 0.609 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.098 0.902 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.058 0.942 48 H 0.055 0.945 49 H 0.053 0.947 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.859 8.592 -19.360 21.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.277 4.277 2 C -0.169 4.169 3 C 0.120 3.880 4 N -0.287 5.287 5 C -0.391 4.391 6 H 0.102 0.898 7 C -0.162 4.162 8 N -0.530 5.530 9 Si 0.692 3.308 10 H -0.214 1.214 11 H -0.224 1.224 12 H -0.185 1.185 13 C -0.012 4.012 14 C 0.275 3.725 15 O -0.382 6.382 16 N -0.397 5.397 17 C 0.088 3.912 18 H 0.112 0.888 19 C -0.116 4.116 20 C -0.093 4.093 21 C -0.223 4.223 22 C 0.076 3.924 23 O -0.233 6.233 24 C -0.068 4.068 25 C -0.167 4.167 26 C -0.085 4.085 27 C -0.117 4.117 28 C -0.195 4.195 29 C -0.203 4.203 30 H 0.220 0.780 31 H 0.101 0.899 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.225 0.775 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.073 0.927 41 H 0.117 0.883 42 H 0.148 0.852 43 H 0.150 0.850 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.060 0.940 47 H 0.077 0.923 48 H 0.074 0.926 49 H 0.072 0.928 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.625 8.566 -18.642 21.559 hybrid contribution -1.601 -0.682 -1.380 2.221 sum 5.025 7.883 -20.022 22.097 Atomic orbital electron populations 1.24684 0.95766 1.03387 1.03824 1.25166 0.96185 0.97732 0.97817 1.18138 0.81414 0.88755 0.99733 1.43656 1.72479 1.11246 1.01344 1.18782 1.35794 0.83809 1.00666 0.89824 1.25473 0.97444 0.95618 0.97661 1.69882 1.39949 0.98777 1.44370 0.87145 0.84434 0.77915 0.81351 1.21415 1.22414 1.18503 1.21307 0.91073 1.01252 0.87602 1.22556 0.92177 0.76541 0.81181 1.90625 1.56502 1.44591 1.46469 1.46478 1.12768 1.70701 1.09709 1.19754 0.85220 0.92615 0.93632 0.88803 1.19912 0.94545 1.01108 0.96036 1.20716 0.99193 0.97301 0.92066 1.21172 0.95825 1.05286 1.00012 1.19036 0.93172 0.93666 0.86519 1.86061 1.40655 1.73997 1.22598 1.23042 0.92727 1.01747 0.89239 1.20401 0.99907 1.04202 0.92153 1.20859 0.95562 0.95322 0.96755 1.21483 0.97188 0.94306 0.98712 1.21870 1.02651 0.98247 0.96721 1.21828 0.96053 1.00898 1.01486 0.77978 0.89879 0.91581 0.92599 0.91301 0.90110 0.77541 0.85826 0.85529 0.92591 0.92703 0.88348 0.85154 0.85036 0.91603 0.91644 0.93999 0.92337 0.92587 0.92829 0.92484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -4.74 19.25 29.55 0.57 -4.17 16 2 C -0.17 -3.36 13.68 -37.13 -0.51 -3.87 16 3 C 0.24 5.00 6.14 -6.83 -0.04 4.96 16 4 N -0.57 -13.46 1.51 -177.95 -0.27 -13.72 16 5 C -0.26 -7.35 9.90 -15.06 -0.15 -7.50 16 6 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 7 C 0.04 1.13 5.29 -17.43 -0.09 1.04 16 8 N -0.89 -27.17 13.97 55.49 0.78 -26.39 16 9 Si 0.86 21.47 25.10 -169.99 -4.27 17.20 16 10 H -0.29 -6.72 6.68 56.52 0.38 -6.35 16 11 H -0.30 -7.56 7.11 56.52 0.40 -7.15 16 12 H -0.26 -6.40 7.11 56.52 0.40 -6.00 16 13 C 0.12 2.45 5.00 -5.20 -0.03 2.43 16 14 C 0.49 9.58 6.26 -10.99 -0.07 9.52 16 15 O -0.51 -11.47 13.55 5.55 0.08 -11.40 16 16 N -0.74 -11.33 4.91 -54.93 -0.27 -11.60 16 17 C 0.19 2.65 2.04 -69.08 -0.14 2.51 16 18 H 0.09 1.51 7.44 -51.93 -0.39 1.12 16 19 C -0.12 -1.39 4.05 -104.60 -0.42 -1.82 16 20 C -0.07 -0.81 9.05 -39.61 -0.36 -1.17 16 21 C -0.20 -2.12 9.04 -39.43 -0.36 -2.48 16 22 C 0.12 1.36 6.69 -39.22 -0.26 1.10 16 23 O -0.32 -3.37 10.50 -19.44 -0.20 -3.57 16 24 C 0.03 0.18 9.81 101.05 0.99 1.18 16 25 C -0.15 -1.65 9.99 -39.43 -0.39 -2.05 16 26 C -0.07 -0.76 8.69 -39.60 -0.34 -1.11 16 27 C -0.10 -1.18 2.68 -90.62 -0.24 -1.43 16 28 C -0.14 -1.94 7.72 37.16 0.29 -1.65 16 29 C -0.14 -1.52 8.78 37.15 0.33 -1.20 16 30 H 0.20 2.92 7.80 -54.10 -0.42 2.49 16 31 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 32 H 0.07 1.19 8.08 -51.93 -0.42 0.77 16 33 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 34 H 0.07 1.23 8.07 -51.93 -0.42 0.81 16 35 H 0.08 1.82 3.38 -51.93 -0.18 1.65 16 36 H 0.39 5.09 6.85 -40.82 -0.28 4.81 16 37 H 0.12 1.16 6.89 -52.49 -0.36 0.80 16 38 H 0.13 1.03 6.30 -52.49 -0.33 0.70 16 39 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 40 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.13 1.35 8.03 -52.49 -0.42 0.93 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 46 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.93 5.77 -51.93 -0.30 0.63 16 48 H 0.06 0.56 6.64 -51.93 -0.34 0.22 16 49 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 405.78 15.07 6.11 6.11 Total: -1.00 -34.00 405.78 -6.86 -40.87 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.58 Total: 8.22 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.24 Total: -5.71 kcal Atomic # 7 Polarization: -51.96 SS G_CDS: 0.24 Total: -51.72 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.13 Total: -14.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.27 Total: 17.20 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.00 -6.86 -40.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281229101.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.350 kcal (2) G-P(sol) polarization free energy of solvation -34.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds