Wall clock time and date at job start Wed Apr 1 2020 05:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46894 * 2 1 4 4 H 1.08997 * 109.76801 * 306.76355 * 3 2 1 5 5 C 1.52780 * 109.76889 * 186.02092 * 3 2 1 6 6 C 1.50606 * 110.85782 * 192.89091 * 5 3 2 7 7 C 1.38983 * 117.61912 * 200.03523 * 6 5 3 8 8 C 1.37905 * 120.58023 * 180.49548 * 7 6 5 9 9 C 1.38267 * 119.82979 * 0.05816 * 8 7 6 10 10 C 1.37960 * 119.71163 * 359.75986 * 9 8 7 11 11 C 1.37664 * 122.86476 * 20.13888 * 6 5 3 12 12 C 1.50816 * 122.34380 * 358.54579 * 11 6 5 13 13 N 1.46781 * 109.70648 * 11.56144 * 12 11 6 14 14 C 1.34779 * 121.40118 * 135.58298 * 13 12 11 15 15 O 1.21345 * 120.00168 * 186.79934 * 14 13 12 16 16 C 1.49452 * 119.99504 * 6.80226 * 14 13 12 17 17 O 1.21345 * 120.00421 * 6.25739 * 16 14 13 18 18 N 1.34778 * 119.99472 * 186.25432 * 16 14 13 19 19 C 1.46500 * 119.99667 * 180.02562 * 18 16 14 20 20 C 1.53002 * 109.47420 * 180.02562 * 19 18 16 21 21 C 1.52996 * 109.47443 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47220 * 179.97438 * 21 20 19 23 23 H 1.08004 * 119.99820 * 0.02562 * 22 21 20 24 24 C 1.37868 * 119.99976 * 179.97438 * 22 21 20 25 25 N 1.31511 * 120.00273 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 119.99950 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46998 * 60.00100 * 26 24 22 28 28 H 1.48503 * 109.47224 * 179.97438 * 26 24 22 29 29 H 1.48491 * 109.47277 * 300.00302 * 26 24 22 30 30 H 1.09001 * 109.46929 * 68.83762 * 1 2 3 31 31 H 1.08993 * 109.47099 * 188.83813 * 1 2 3 32 32 H 1.08997 * 109.47331 * 308.84028 * 1 2 3 33 33 H 1.09001 * 109.47240 * 240.00719 * 2 1 3 34 34 H 1.08998 * 109.46937 * 119.99955 * 2 1 3 35 35 H 1.08997 * 109.20226 * 313.24538 * 5 3 2 36 36 H 1.09000 * 109.20429 * 72.53984 * 5 3 2 37 37 H 1.07997 * 119.70966 * 0.50099 * 7 6 5 38 38 H 1.07998 * 120.08550 * 180.02562 * 8 7 6 39 39 H 1.08003 * 120.14060 * 179.77410 * 9 8 7 40 40 H 1.08009 * 119.74152 * 179.97438 * 10 9 8 41 41 H 1.08994 * 109.43962 * 131.62966 * 12 11 6 42 42 H 1.09002 * 109.43450 * 251.54893 * 12 11 6 43 43 H 0.96991 * 120.00653 * 0.02562 * 18 16 14 44 44 H 1.09007 * 109.46989 * 300.00196 * 19 18 16 45 45 H 1.09000 * 109.47648 * 60.00043 * 19 18 16 46 46 H 1.09000 * 109.46726 * 299.99660 * 20 19 18 47 47 H 1.09000 * 109.46936 * 59.99287 * 20 19 18 48 48 H 1.09000 * 109.47008 * 299.99642 * 21 20 19 49 49 H 1.09008 * 109.47166 * 59.99778 * 21 20 19 50 50 H 0.97009 * 120.00417 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5840 1.9948 -0.8217 5 6 3.5603 1.4532 -0.1508 6 6 4.1202 2.8170 0.1572 7 6 5.3868 3.1183 -0.3291 8 6 5.9624 4.3454 -0.0746 9 6 5.2760 5.2856 0.6716 10 6 4.0170 4.9905 1.1523 11 6 3.4343 3.7576 0.8920 12 6 2.0453 3.5096 1.4247 13 7 1.7062 2.0888 1.2801 14 6 1.1143 1.4030 2.2781 15 8 0.9569 0.2038 2.1801 16 6 0.6519 2.1197 3.5053 17 8 0.7050 3.3309 3.5570 18 7 0.1758 1.4206 4.5547 19 6 -0.2780 2.1231 5.7575 20 6 -0.7658 1.1044 6.7897 21 6 -1.2391 1.8380 8.0461 22 6 -1.7202 0.8346 9.0625 23 1 -1.6907 -0.2208 8.8351 24 6 -2.1968 1.2640 10.2828 25 7 -2.2321 2.5491 10.5598 26 14 -2.7924 0.0202 11.5429 27 1 -1.6803 -0.8988 11.8952 28 1 -3.2508 0.7322 12.7629 29 1 -3.9187 -0.7616 10.9727 30 1 -0.3633 0.3710 -0.9584 31 1 -0.3633 -1.0154 0.1579 32 1 -0.3634 0.6445 0.8004 33 1 1.8934 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8900 35 1 3.9936 0.7247 0.5344 36 1 3.8210 1.1814 -1.1737 37 1 5.9250 2.3851 -0.9114 38 1 6.9469 4.5713 -0.4567 39 1 5.7236 6.2468 0.8770 40 1 3.4806 5.7244 1.7356 41 1 2.0061 3.7862 2.4782 42 1 1.3293 4.1112 0.8647 43 1 0.1337 0.4525 4.5136 44 1 0.5485 2.6972 6.1766 45 1 -1.0942 2.7975 5.4984 46 1 -1.5921 0.5301 6.3708 47 1 0.0507 0.4303 7.0488 48 1 -0.4125 2.4120 8.4648 49 1 -2.0555 2.5124 7.7872 50 1 -2.5678 2.8512 11.4184 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286826997.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:54 Heat of formation + Delta-G solvation = -28.309696 kcal Electronic energy + Delta-G solvation = -29927.040965 eV Core-core repulsion = 25919.703974 eV Total energy + Delta-G solvation = -4007.336991 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.52563 -39.82619 -38.88881 -36.71879 -35.64724 -34.05799 -33.36761 -32.51521 -31.49102 -31.26106 -29.01728 -27.37568 -26.27776 -24.85035 -24.08751 -22.91875 -22.33020 -21.60128 -20.90230 -20.64543 -19.37326 -17.76882 -17.01480 -16.59974 -16.44168 -16.24652 -15.93090 -15.55393 -15.29286 -15.15855 -14.87672 -14.55852 -14.46025 -14.00831 -13.84768 -13.74434 -13.56442 -13.29194 -13.13119 -12.85880 -12.68537 -12.31382 -12.01569 -11.89551 -11.84158 -11.79517 -11.65132 -11.40205 -11.14861 -10.90687 -10.89371 -10.79300 -10.64516 -10.48099 -9.91839 -9.57728 -9.21006 -9.17194 -9.06372 -9.01106 -8.92517 -8.68706 -8.38938 -6.03783 -4.06951 1.05028 1.07883 1.37455 2.20554 3.14715 3.31657 3.36250 3.37433 3.40485 3.44381 4.21269 4.33770 4.36860 4.43629 4.51679 4.66874 4.75109 4.82557 4.89616 5.08446 5.11280 5.18655 5.31379 5.32114 5.34836 5.41740 5.50597 5.56384 5.60520 5.66318 5.66463 5.69457 5.80260 5.83345 5.94554 6.05316 6.16678 6.20405 6.22449 6.26357 6.31429 6.43697 6.51631 6.69087 6.70854 6.92017 6.93453 7.28533 7.59805 7.70853 7.71559 7.94202 8.02139 8.35436 8.99259 9.57443 11.07402 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.015742 B = 0.002095 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.202898 B =13363.733541 C =14614.697994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.132 4.132 3 C 0.146 3.854 4 H 0.082 0.918 5 C -0.092 4.092 6 C -0.076 4.076 7 C -0.120 4.120 8 C -0.122 4.122 9 C -0.120 4.120 10 C -0.111 4.111 11 C -0.092 4.092 12 C 0.123 3.877 13 N -0.580 5.580 14 C 0.512 3.488 15 O -0.504 6.504 16 C 0.498 3.502 17 O -0.522 6.522 18 N -0.689 5.689 19 C 0.113 3.887 20 C -0.123 4.123 21 C 0.025 3.975 22 C -0.523 4.523 23 H 0.055 0.945 24 C 0.057 3.943 25 N -0.894 5.894 26 Si 0.894 3.106 27 H -0.277 1.277 28 H -0.287 1.287 29 H -0.277 1.277 30 H 0.037 0.963 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.123 0.877 40 H 0.127 0.873 41 H 0.144 0.856 42 H 0.083 0.917 43 H 0.411 0.589 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.020 0.980 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.276 1.322 -26.701 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.169 4.169 3 C 0.043 3.957 4 H 0.100 0.900 5 C -0.130 4.130 6 C -0.076 4.076 7 C -0.138 4.138 8 C -0.140 4.140 9 C -0.138 4.138 10 C -0.129 4.129 11 C -0.092 4.092 12 C 0.001 3.999 13 N -0.314 5.314 14 C 0.295 3.705 15 O -0.380 6.380 16 C 0.278 3.722 17 O -0.400 6.400 18 N -0.340 5.340 19 C -0.009 4.009 20 C -0.161 4.161 21 C -0.013 4.013 22 C -0.562 4.562 23 H 0.074 0.926 24 C -0.144 4.144 25 N -0.533 5.533 26 Si 0.722 3.278 27 H -0.202 1.202 28 H -0.213 1.213 29 H -0.202 1.202 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.127 0.873 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.138 0.862 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.101 0.899 43 H 0.247 0.753 44 H 0.089 0.911 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.038 0.962 49 H 0.038 0.962 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.143 1.652 -26.538 30.117 hybrid contribution -0.242 -0.847 0.621 1.078 sum 13.901 0.805 -25.917 29.421 Atomic orbital electron populations 1.21819 0.95164 1.02256 1.00108 1.22188 0.97132 0.93888 1.03729 1.21458 0.94166 0.95413 0.84632 0.90038 1.20896 0.95023 0.94283 1.02801 1.19491 0.94769 0.95483 0.97844 1.21146 0.94906 0.97159 1.00586 1.21071 0.99897 0.93923 0.99070 1.21088 0.94933 0.99563 0.98226 1.21072 0.95688 0.96172 0.99973 1.19930 0.96473 0.94408 0.98434 1.21466 0.91709 0.80230 1.06473 1.47832 1.57980 1.11629 1.13964 1.20129 0.79131 0.87121 0.84087 1.90744 1.54737 1.13665 1.78883 1.20185 0.79744 0.87629 0.84601 1.90564 1.54313 1.13571 1.81599 1.46086 1.61001 1.11737 1.15130 1.21856 0.99666 0.96228 0.83115 1.21926 1.00177 0.97542 0.96413 1.19025 0.96565 0.95670 0.90011 1.21157 1.42197 0.93168 0.99648 0.92631 1.25022 0.95820 0.95211 0.98381 1.69950 1.46598 1.13510 1.23239 0.86632 0.79199 0.81296 0.80719 1.20226 1.21274 1.20216 0.94354 0.92536 0.92555 0.92303 0.87285 0.89870 0.89509 0.86185 0.86107 0.85867 0.85515 0.83950 0.89871 0.75296 0.91068 0.91045 0.92426 0.92457 0.96215 0.96208 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.72 37.16 0.32 -1.07 16 2 C -0.13 -1.23 4.85 -26.73 -0.13 -1.36 16 3 C 0.15 1.32 2.83 -67.64 -0.19 1.13 16 4 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.09 -0.74 5.21 -28.04 -0.15 -0.88 16 6 C -0.08 -0.70 5.76 -104.60 -0.60 -1.30 16 7 C -0.12 -0.98 9.59 -39.43 -0.38 -1.35 16 8 C -0.12 -0.95 10.04 -39.69 -0.40 -1.34 16 9 C -0.12 -0.98 10.05 -39.67 -0.40 -1.37 16 10 C -0.11 -1.01 9.62 -39.47 -0.38 -1.39 16 11 C -0.09 -0.91 5.82 -104.56 -0.61 -1.52 16 12 C 0.12 1.30 5.58 -4.98 -0.03 1.27 16 13 N -0.58 -6.37 2.90 -167.26 -0.49 -6.85 16 14 C 0.51 6.53 6.35 -11.58 -0.07 6.45 16 15 O -0.50 -6.68 10.57 5.50 0.06 -6.62 16 16 C 0.50 7.14 7.74 -11.58 -0.09 7.05 16 17 O -0.52 -8.24 13.27 5.50 0.07 -8.17 16 18 N -0.69 -9.90 5.55 -60.73 -0.34 -10.24 16 19 C 0.11 1.88 5.67 -4.04 -0.02 1.86 16 20 C -0.12 -2.34 5.27 -26.73 -0.14 -2.48 16 21 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 22 C -0.52 -14.46 9.11 -34.44 -0.31 -14.77 16 23 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 24 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 25 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 26 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 27 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 29 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.68 5.37 -51.93 -0.28 0.40 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.11 1.22 5.70 -52.74 -0.30 0.92 16 35 H 0.08 0.71 8.07 -51.93 -0.42 0.29 16 36 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 37 H 0.12 0.74 8.05 -52.49 -0.42 0.32 16 38 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 40 H 0.13 1.01 8.05 -52.48 -0.42 0.58 16 41 H 0.14 1.75 4.78 -52.69 -0.25 1.50 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.41 5.38 7.96 -40.82 -0.32 5.05 16 44 H 0.07 1.22 8.14 -51.92 -0.42 0.80 16 45 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.02 0.52 8.14 -51.92 -0.42 0.09 16 50 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 LS Contribution 396.90 15.07 5.98 5.98 Total: -1.00 -30.68 396.90 -10.69 -41.37 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -7.88 Total: 3.05 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.81 Total: -9.09 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.09 Total: -42.89 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: 0.13 Total: -14.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.68 -10.69 -41.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286826997.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.062 kcal (2) G-P(sol) polarization free energy of solvation -30.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds