Wall clock time and date at job start Wed Apr 1 2020 03:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17409 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 197.25601 * 3 2 1 5 5 N 1.46898 * 109.47115 * 223.02769 * 4 3 2 6 6 C 1.46902 * 110.99565 * 66.04590 * 5 4 3 7 7 C 1.46902 * 110.99983 * 189.99934 * 5 4 3 8 8 H 1.09001 * 109.47171 * 297.03474 * 7 5 4 9 9 C 1.52997 * 109.46871 * 57.03418 * 7 5 4 10 10 C 1.50697 * 109.47139 * 177.03578 * 7 5 4 11 11 O 1.21295 * 119.99863 * 333.74811 * 10 7 5 12 12 N 1.34774 * 120.00293 * 153.75087 * 10 7 5 13 13 C 1.46501 * 119.99649 * 355.93917 * 12 10 7 14 14 C 1.50693 * 109.47245 * 275.25573 * 13 12 10 15 15 H 1.08000 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00187 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00260 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46903 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46876 * 119.99994 * 18 16 14 21 21 H 1.48495 * 109.47166 * 240.00200 * 18 16 14 22 22 C 1.40130 * 120.00235 * 175.94135 * 12 10 7 23 23 C 1.38721 * 120.08768 * 89.99607 * 22 12 10 24 24 C 1.38197 * 119.98266 * 180.23123 * 23 22 12 25 25 C 1.38281 * 120.16025 * 359.49355 * 24 23 22 26 26 C 1.38237 * 120.17991 * 0.51031 * 25 24 23 27 27 C 1.38544 * 120.01711 * 359.74337 * 26 25 24 28 28 O 1.35979 * 120.08367 * 180.02562 * 27 26 25 29 29 C 1.42900 * 117.00088 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47026 * 119.71786 * 1 2 3 31 31 H 1.09006 * 109.46686 * 239.71138 * 1 2 3 32 32 H 1.08994 * 109.47554 * 359.71521 * 1 2 3 33 33 H 1.09000 * 109.47075 * 103.02752 * 4 3 2 34 34 H 1.09005 * 109.46897 * 343.03258 * 4 3 2 35 35 H 1.09000 * 109.46986 * 189.34350 * 6 5 4 36 36 H 1.08992 * 109.47767 * 309.34116 * 6 5 4 37 37 H 1.08997 * 109.47311 * 69.34728 * 6 5 4 38 38 H 1.08995 * 109.47334 * 292.66875 * 9 7 5 39 39 H 1.08997 * 109.47234 * 52.67293 * 9 7 5 40 40 H 1.09005 * 109.46911 * 172.67555 * 9 7 5 41 41 H 1.08996 * 109.46997 * 35.26167 * 13 12 10 42 42 H 1.09006 * 109.46852 * 155.25962 * 13 12 10 43 43 H 0.96995 * 119.99743 * 180.02562 * 17 16 14 44 44 H 1.07997 * 120.01021 * 359.96251 * 23 22 12 45 45 H 1.08003 * 119.91491 * 179.74874 * 24 23 22 46 46 H 1.08001 * 119.90555 * 180.24944 * 25 24 23 47 47 H 1.08004 * 119.99400 * 179.76671 * 26 25 24 48 48 H 1.08991 * 109.47006 * 300.00231 * 29 28 27 49 49 H 1.08998 * 109.46908 * 59.99797 * 29 28 27 50 50 H 1.08994 * 109.47439 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6067 1.0147 0.9453 6 6 4.2573 0.6576 2.3267 7 6 6.0554 1.2122 0.8029 8 1 6.5744 0.2864 1.0512 9 6 6.3770 1.6058 -0.6402 10 6 6.5071 2.3069 1.7348 11 8 5.7277 3.1699 2.0795 12 7 7.7772 2.3270 2.1852 13 6 8.6938 1.2372 1.8410 14 6 8.5131 0.1022 2.8156 15 1 7.7877 0.1841 3.6116 16 6 9.2730 -1.0415 2.6906 17 7 10.1560 -1.1415 1.7210 18 14 9.0485 -2.4488 3.8983 19 1 8.0012 -2.0895 4.8879 20 1 8.6367 -3.6713 3.1627 21 1 10.3295 -2.7041 4.6046 22 6 8.2211 3.3903 2.9828 23 6 8.1016 3.3214 4.3631 24 6 8.5356 4.3733 5.1473 25 6 9.0989 5.4913 4.5601 26 6 9.2212 5.5672 3.1852 27 6 8.7838 4.5192 2.3917 28 8 8.9039 4.5921 1.0392 29 6 9.4904 5.7798 0.5030 30 1 -0.3633 -0.5094 -0.8925 31 1 -0.3633 -0.5183 0.8875 32 1 -0.3634 1.0276 0.0051 33 1 4.4813 0.2338 -1.0010 34 1 4.4822 -0.9809 0.3002 35 1 4.4809 1.4960 2.9864 36 1 3.1942 0.4239 2.3839 37 1 4.8375 -0.2120 2.6351 38 1 6.1709 0.7639 -1.3010 39 1 5.7596 2.4556 -0.9312 40 1 7.4296 1.8783 -0.7165 41 1 8.4790 0.8870 0.8315 42 1 9.7214 1.5977 1.8897 43 1 10.6903 -1.9462 1.6329 44 1 7.6655 2.4478 4.8246 45 1 8.4383 4.3202 6.2216 46 1 9.4404 6.3093 5.1771 47 1 9.6582 6.4434 2.7296 48 1 8.8905 6.6430 0.7908 49 1 10.5017 5.8937 0.8935 50 1 9.5269 5.7083 -0.5840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293088679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:12 Heat of formation + Delta-G solvation = 22.956353 kcal Electronic energy + Delta-G solvation = -31270.713368 eV Core-core repulsion = 27265.599440 eV Total energy + Delta-G solvation = -4005.113928 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.28959 -39.11511 -37.28954 -36.61152 -34.91330 -33.82917 -32.65670 -31.22224 -29.89383 -29.43551 -29.27664 -27.21992 -26.86090 -26.36965 -24.42381 -23.08176 -22.90746 -21.77960 -20.98742 -18.65416 -17.65874 -17.04375 -16.68872 -16.33887 -15.77688 -15.73082 -15.41834 -15.23286 -14.91956 -14.50113 -14.46015 -14.07821 -13.92528 -13.70734 -13.57740 -13.49459 -13.26448 -12.80582 -12.67081 -12.45788 -12.32937 -12.22909 -11.92905 -11.85868 -11.52754 -11.49208 -11.29604 -11.09299 -11.02340 -10.94378 -10.84367 -10.81154 -10.73278 -10.23347 -9.78608 -9.76561 -9.55354 -8.97304 -8.59369 -8.46442 -7.95585 -7.82133 -7.77208 -6.21739 -4.29158 1.66430 1.79863 2.74000 2.89967 3.18275 3.27379 3.30206 3.40372 3.57698 3.78439 4.11114 4.27766 4.35185 4.55890 5.06313 5.10822 5.16436 5.26832 5.29483 5.32283 5.42948 5.50475 5.50806 5.53745 5.59368 5.60616 5.63195 5.69755 5.74536 5.82687 5.93668 5.96077 5.97467 6.05806 6.10179 6.13115 6.28891 6.43597 6.51860 6.56686 6.70899 6.78130 6.89234 7.07287 7.19843 7.28097 7.31991 7.52413 7.70913 7.82940 7.87910 8.02713 8.28948 8.76462 9.09881 9.38704 10.85003 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007506 B = 0.004521 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.640026 B = 6191.785845 C = 8248.613736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 C -0.202 4.202 3 C -0.160 4.160 4 C 0.160 3.840 5 N -0.517 5.517 6 C 0.022 3.978 7 C 0.065 3.935 8 H 0.092 0.908 9 C -0.139 4.139 10 C 0.536 3.464 11 O -0.544 6.544 12 N -0.555 5.555 13 C 0.243 3.757 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.068 3.932 17 N -0.888 5.888 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.140 3.860 23 C -0.065 4.065 24 C -0.154 4.154 25 C -0.090 4.090 26 C -0.210 4.210 27 C 0.128 3.872 28 O -0.304 6.304 29 C 0.029 3.971 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.031 0.969 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.042 0.958 42 H 0.036 0.964 43 H 0.265 0.735 44 H 0.131 0.869 45 H 0.122 0.878 46 H 0.120 0.880 47 H 0.125 0.875 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.250 7.535 -2.235 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.203 4.203 3 C -0.161 4.161 4 C 0.033 3.967 5 N -0.242 5.242 6 C -0.126 4.126 7 C -0.046 4.046 8 H 0.110 0.890 9 C -0.197 4.197 10 C 0.324 3.676 11 O -0.421 6.421 12 N -0.284 5.284 13 C 0.124 3.876 14 C -0.576 4.576 15 H 0.079 0.921 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.720 3.280 19 H -0.196 1.196 20 H -0.208 1.208 21 H -0.208 1.208 22 C 0.049 3.951 23 C -0.084 4.084 24 C -0.173 4.173 25 C -0.108 4.108 26 C -0.229 4.229 27 C 0.081 3.919 28 O -0.217 6.217 29 C -0.067 4.067 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.050 0.950 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.060 0.940 42 H 0.054 0.946 43 H 0.075 0.925 44 H 0.149 0.851 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.143 0.857 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.778 8.148 -2.423 10.872 hybrid contribution 0.719 -1.449 0.935 1.868 sum -6.059 6.699 -1.488 9.154 Atomic orbital electron populations 1.18775 0.84918 1.02789 1.02529 1.22283 0.93776 1.02216 1.02033 1.22138 0.93254 1.00188 1.00478 1.19076 0.84562 0.94553 0.98476 1.61767 1.12965 1.44163 1.05337 1.22449 1.00352 1.00589 0.89205 1.21645 0.87783 0.99076 0.96055 0.89009 1.21782 1.02603 1.01948 0.93333 1.20159 0.81160 0.85885 0.80390 1.90611 1.53121 1.39579 1.58831 1.45688 1.11871 1.21766 1.49102 1.19511 0.88642 0.82753 0.96659 1.21513 1.22009 1.00102 1.14021 0.92089 1.24912 0.94742 0.98363 0.95550 1.69934 1.23132 1.28376 1.31129 0.86519 0.78263 0.82012 0.81212 1.19620 1.20804 1.20753 1.16852 1.00941 0.87545 0.89778 1.21257 0.96814 0.98374 0.91941 1.20900 1.02517 0.94249 0.99641 1.20824 0.98333 0.97813 0.93804 1.21013 1.08049 0.99132 0.94726 1.19340 0.96011 0.94019 0.82563 1.86181 1.77277 1.40058 1.18190 1.22997 0.97308 0.86706 0.99646 0.90606 0.90593 0.90393 0.88078 0.92244 0.90326 0.91917 0.95038 0.91823 0.91599 0.90987 0.94014 0.94550 0.92538 0.85123 0.86006 0.86179 0.85717 0.93079 0.92935 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.33 10.32 34.37 0.35 0.03 16 2 C -0.20 -2.87 14.13 -37.12 -0.52 -3.39 16 3 C -0.16 -2.52 12.32 -37.12 -0.46 -2.97 16 4 C 0.16 2.50 5.23 -6.61 -0.03 2.46 16 5 N -0.52 -9.49 4.33 -239.81 -1.04 -10.53 16 6 C 0.02 0.40 9.00 60.07 0.54 0.94 16 7 C 0.07 1.26 1.63 -68.87 -0.11 1.15 16 8 H 0.09 1.93 6.18 -51.93 -0.32 1.61 16 9 C -0.14 -2.33 8.38 37.16 0.31 -2.02 16 10 C 0.54 11.79 5.88 -10.99 -0.06 11.72 16 11 O -0.54 -13.15 15.31 5.54 0.08 -13.07 16 12 N -0.56 -12.32 2.25 -114.60 -0.26 -12.58 16 13 C 0.24 5.85 4.79 -5.20 -0.02 5.82 16 14 C -0.54 -13.75 8.63 -34.44 -0.30 -14.05 16 15 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 17 N -0.89 -24.05 13.29 55.43 0.74 -23.31 16 18 Si 0.89 20.29 29.54 -169.99 -5.02 15.27 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 C 0.14 2.95 4.46 -83.49 -0.37 2.58 16 23 C -0.06 -1.24 9.96 -39.42 -0.39 -1.63 16 24 C -0.15 -2.43 10.04 -39.58 -0.40 -2.83 16 25 C -0.09 -1.29 10.04 -39.57 -0.40 -1.69 16 26 C -0.21 -3.25 9.04 -39.47 -0.36 -3.61 16 27 C 0.13 2.41 6.70 -39.08 -0.26 2.15 16 28 O -0.30 -5.54 10.24 -19.67 -0.20 -5.74 16 29 C 0.03 0.36 9.81 101.05 0.99 1.35 16 30 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 1.42 5.89 -51.93 -0.31 1.11 16 34 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 35 H 0.08 1.59 6.41 -51.93 -0.33 1.26 16 36 H 0.06 1.06 7.03 -51.93 -0.37 0.69 16 37 H 0.03 0.58 8.13 -51.93 -0.42 0.15 16 38 H 0.06 0.90 6.57 -51.93 -0.34 0.56 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 41 H 0.04 1.02 5.71 -51.93 -0.30 0.72 16 42 H 0.04 0.95 8.01 -51.93 -0.42 0.54 16 43 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 44 H 0.13 2.54 8.06 -52.49 -0.42 2.12 16 45 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 46 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 47 H 0.12 1.55 6.30 -52.48 -0.33 1.22 16 48 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 49 H 0.05 0.57 7.66 -51.93 -0.40 0.17 16 50 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 414.11 15.07 6.24 6.24 Total: -1.00 -31.84 414.11 -8.71 -40.54 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -7.66 Total: 5.51 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.59 Total: -2.33 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.56 Total: -46.43 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.12 Total: -18.81 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.84 -8.71 -40.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293088679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.499 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds