Wall clock time and date at job start Wed Apr 1 2020 03:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47198 * 1 3 3 C 1.17409 * 179.97438 * 2 1 4 4 C 1.47198 * 179.97438 * 197.25601 * 3 2 1 5 5 N 1.46898 * 109.47115 * 223.02769 * 4 3 2 6 6 C 1.46902 * 110.99565 * 66.04590 * 5 4 3 7 7 C 1.46902 * 110.99983 * 189.99934 * 5 4 3 8 8 H 1.09001 * 109.47171 * 297.03474 * 7 5 4 9 9 C 1.52997 * 109.46871 * 57.03418 * 7 5 4 10 10 C 1.50697 * 109.47139 * 177.03578 * 7 5 4 11 11 O 1.21295 * 119.99863 * 333.74811 * 10 7 5 12 12 N 1.34774 * 120.00293 * 153.75087 * 10 7 5 13 13 C 1.46501 * 119.99649 * 355.93917 * 12 10 7 14 14 C 1.50693 * 109.47245 * 275.25573 * 13 12 10 15 15 H 1.08000 * 120.00115 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00187 * 179.97438 * 14 13 12 17 17 N 1.31521 * 119.99858 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00260 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46903 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.46876 * 119.99994 * 18 16 14 21 21 H 1.48495 * 109.47166 * 240.00200 * 18 16 14 22 22 C 1.40130 * 120.00235 * 175.94135 * 12 10 7 23 23 C 1.38721 * 120.08768 * 89.99607 * 22 12 10 24 24 C 1.38197 * 119.98266 * 180.23123 * 23 22 12 25 25 C 1.38281 * 120.16025 * 359.49355 * 24 23 22 26 26 C 1.38237 * 120.17991 * 0.51031 * 25 24 23 27 27 C 1.38544 * 120.01711 * 359.74337 * 26 25 24 28 28 O 1.35979 * 120.08367 * 180.02562 * 27 26 25 29 29 C 1.42900 * 117.00088 * 359.97438 * 28 27 26 30 30 H 1.09000 * 109.47026 * 119.71786 * 1 2 3 31 31 H 1.09006 * 109.46686 * 239.71138 * 1 2 3 32 32 H 1.08994 * 109.47554 * 359.71521 * 1 2 3 33 33 H 1.09000 * 109.47075 * 103.02752 * 4 3 2 34 34 H 1.09005 * 109.46897 * 343.03258 * 4 3 2 35 35 H 1.09000 * 109.46986 * 189.34350 * 6 5 4 36 36 H 1.08992 * 109.47767 * 309.34116 * 6 5 4 37 37 H 1.08997 * 109.47311 * 69.34728 * 6 5 4 38 38 H 1.08995 * 109.47334 * 292.66875 * 9 7 5 39 39 H 1.08997 * 109.47234 * 52.67293 * 9 7 5 40 40 H 1.09005 * 109.46911 * 172.67555 * 9 7 5 41 41 H 1.08996 * 109.46997 * 35.26167 * 13 12 10 42 42 H 1.09006 * 109.46852 * 155.25962 * 13 12 10 43 43 H 0.96995 * 119.99743 * 180.02562 * 17 16 14 44 44 H 1.07997 * 120.01021 * 359.96251 * 23 22 12 45 45 H 1.08003 * 119.91491 * 179.74874 * 24 23 22 46 46 H 1.08001 * 119.90555 * 180.24944 * 25 24 23 47 47 H 1.08004 * 119.99400 * 179.76671 * 26 25 24 48 48 H 1.08991 * 109.47006 * 300.00231 * 29 28 27 49 49 H 1.08998 * 109.46908 * 59.99797 * 29 28 27 50 50 H 1.08994 * 109.47439 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6461 0.0005 0.0000 4 6 4.1180 0.0018 0.0002 5 7 4.6067 1.0147 0.9453 6 6 4.2573 0.6576 2.3267 7 6 6.0554 1.2122 0.8029 8 1 6.5744 0.2864 1.0512 9 6 6.3770 1.6058 -0.6402 10 6 6.5071 2.3069 1.7348 11 8 5.7277 3.1699 2.0795 12 7 7.7772 2.3270 2.1852 13 6 8.6938 1.2372 1.8410 14 6 8.5131 0.1022 2.8156 15 1 7.7877 0.1841 3.6116 16 6 9.2730 -1.0415 2.6906 17 7 10.1560 -1.1415 1.7210 18 14 9.0485 -2.4488 3.8983 19 1 8.0012 -2.0895 4.8879 20 1 8.6367 -3.6713 3.1627 21 1 10.3295 -2.7041 4.6046 22 6 8.2211 3.3903 2.9828 23 6 8.1016 3.3214 4.3631 24 6 8.5356 4.3733 5.1473 25 6 9.0989 5.4913 4.5601 26 6 9.2212 5.5672 3.1852 27 6 8.7838 4.5192 2.3917 28 8 8.9039 4.5921 1.0392 29 6 9.4904 5.7798 0.5030 30 1 -0.3633 -0.5094 -0.8925 31 1 -0.3633 -0.5183 0.8875 32 1 -0.3634 1.0276 0.0051 33 1 4.4813 0.2338 -1.0010 34 1 4.4822 -0.9809 0.3002 35 1 4.4809 1.4960 2.9864 36 1 3.1942 0.4239 2.3839 37 1 4.8375 -0.2120 2.6351 38 1 6.1709 0.7639 -1.3010 39 1 5.7596 2.4556 -0.9312 40 1 7.4296 1.8783 -0.7165 41 1 8.4790 0.8870 0.8315 42 1 9.7214 1.5977 1.8897 43 1 10.6903 -1.9462 1.6329 44 1 7.6655 2.4478 4.8246 45 1 8.4383 4.3202 6.2216 46 1 9.4404 6.3093 5.1771 47 1 9.6582 6.4434 2.7296 48 1 8.8905 6.6430 0.7908 49 1 10.5017 5.8937 0.8935 50 1 9.5269 5.7083 -0.5840 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293088679.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:45:10 Heat of formation + Delta-G solvation = 4.539225 kcal Electronic energy + Delta-G solvation = -31271.511995 eV Core-core repulsion = 27265.599440 eV Total energy + Delta-G solvation = -4005.912555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.78699 -40.55663 -38.66120 -38.00454 -36.68199 -34.94402 -34.60403 -32.60858 -31.21906 -30.85108 -30.41333 -28.97065 -28.07445 -27.54958 -25.92026 -24.92266 -24.39515 -23.06837 -22.40017 -20.18880 -19.06424 -18.76261 -18.31157 -17.86545 -17.24189 -17.15068 -16.72284 -16.54587 -16.34435 -16.22842 -15.75580 -15.49258 -15.33058 -14.98246 -14.79240 -14.46941 -14.38869 -14.29045 -14.05863 -14.00191 -13.76509 -13.59931 -13.45049 -13.25432 -13.15121 -12.93253 -12.70118 -12.66296 -12.62819 -12.52861 -12.39758 -12.24635 -11.98983 -11.95882 -11.69098 -10.90375 -10.78087 -10.65255 -10.49243 -9.81859 -9.65331 -9.38398 -9.09976 -8.23924 -6.38393 0.32624 0.48344 1.35768 1.38866 1.48141 1.52313 1.75196 1.78212 2.18469 2.37028 2.44454 2.78476 3.01394 3.06058 3.38500 3.67784 3.92703 4.01500 4.10642 4.14712 4.24966 4.27366 4.33417 4.37455 4.39003 4.49170 4.53903 4.55422 4.61201 4.68869 4.69242 4.76551 4.78912 4.83513 4.85230 4.87699 4.89154 4.96509 5.05235 5.10129 5.21325 5.30979 5.42437 5.52268 5.63129 5.75092 5.81692 5.91665 6.00221 6.03149 6.46446 6.54463 6.72102 6.75748 7.29189 7.42035 8.82482 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.007506 B = 0.004521 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3729.640026 B = 6191.785845 C = 8248.613736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 C -0.186 4.186 3 C -0.210 4.210 4 C 0.162 3.838 5 N -0.525 5.525 6 C 0.032 3.968 7 C 0.071 3.929 8 H 0.071 0.929 9 C -0.131 4.131 10 C 0.532 3.468 11 O -0.572 6.572 12 N -0.552 5.552 13 C 0.265 3.735 14 C -0.543 4.543 15 H 0.049 0.951 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.274 1.274 21 H -0.277 1.277 22 C 0.088 3.912 23 C -0.090 4.090 24 C -0.153 4.153 25 C -0.076 4.076 26 C -0.205 4.205 27 C 0.109 3.891 28 O -0.337 6.337 29 C 0.019 3.981 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.024 0.976 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.034 0.966 42 H 0.008 0.992 43 H 0.269 0.731 44 H 0.111 0.889 45 H 0.152 0.848 46 H 0.168 0.832 47 H 0.161 0.839 48 H 0.066 0.934 49 H 0.069 0.931 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.840 8.546 -1.939 11.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.187 4.187 3 C -0.211 4.211 4 C 0.037 3.963 5 N -0.250 5.250 6 C -0.116 4.116 7 C -0.040 4.040 8 H 0.088 0.912 9 C -0.188 4.188 10 C 0.321 3.679 11 O -0.452 6.452 12 N -0.280 5.280 13 C 0.145 3.855 14 C -0.581 4.581 15 H 0.067 0.933 16 C -0.173 4.173 17 N -0.554 5.554 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.199 1.199 21 H -0.202 1.202 22 C -0.003 4.003 23 C -0.110 4.110 24 C -0.171 4.171 25 C -0.094 4.094 26 C -0.223 4.223 27 C 0.062 3.938 28 O -0.251 6.251 29 C -0.075 4.075 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.052 0.948 42 H 0.026 0.974 43 H 0.078 0.922 44 H 0.129 0.871 45 H 0.170 0.830 46 H 0.185 0.815 47 H 0.178 0.822 48 H 0.085 0.915 49 H 0.087 0.913 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -7.360 9.168 -2.132 11.949 hybrid contribution 0.878 -1.647 0.845 2.048 sum -6.482 7.522 -1.287 10.012 Atomic orbital electron populations 1.19091 0.81849 1.04174 1.04389 1.23351 0.95085 1.00249 1.00061 1.22283 0.93739 1.02367 1.02709 1.19082 0.85166 0.93783 0.98304 1.61778 1.11956 1.45609 1.05632 1.22300 1.01028 0.99075 0.89194 1.21561 0.88422 0.97111 0.96911 0.91160 1.21746 1.01859 1.03121 0.92120 1.20594 0.80869 0.86121 0.80320 1.90566 1.53607 1.40932 1.60055 1.45570 1.11568 1.21767 1.49118 1.19076 0.87496 0.82963 0.95984 1.21591 1.21777 1.00856 1.13915 0.93262 1.25586 0.94358 1.00410 0.96991 1.70019 1.23775 1.29185 1.32397 0.85594 0.78173 0.79298 0.79205 1.19699 1.19942 1.20214 1.17339 1.03851 0.88521 0.90590 1.21310 0.98406 0.99348 0.91916 1.21268 1.01437 0.93501 1.00917 1.21379 0.96050 0.98128 0.93841 1.21473 1.06701 0.99012 0.95163 1.19537 0.96473 0.94369 0.83416 1.86125 1.77967 1.42875 1.18102 1.23336 0.98116 0.85409 1.00613 0.88303 0.88961 0.89105 0.86645 0.92088 0.92819 0.90447 0.95781 0.88971 0.91431 0.92050 0.94778 0.97381 0.92196 0.87110 0.83000 0.81469 0.82177 0.91508 0.91285 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.65 10.32 70.18 0.72 0.08 16 2 C -0.19 -5.02 14.13 31.12 0.44 -4.58 16 3 C -0.21 -6.53 12.32 31.12 0.38 -6.15 16 4 C 0.16 5.12 5.23 84.50 0.44 5.56 16 5 N -0.52 -19.91 4.33 -912.61 -3.95 -23.86 16 6 C 0.03 1.24 9.00 127.69 1.15 2.39 16 7 C 0.07 2.89 1.63 44.17 0.07 2.97 16 8 H 0.07 3.15 6.18 -2.39 -0.01 3.14 16 9 C -0.13 -4.51 8.38 71.98 0.60 -3.91 16 10 C 0.53 24.82 5.88 87.66 0.52 25.33 16 11 O -0.57 -29.17 15.31 -3.08 -0.05 -29.21 16 12 N -0.55 -26.14 2.25 -634.86 -1.43 -27.58 16 13 C 0.26 13.56 4.79 85.63 0.41 13.97 16 14 C -0.54 -29.14 8.63 25.60 0.22 -28.92 16 15 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 16 C 0.03 1.46 5.46 84.65 0.46 1.92 16 17 N -0.91 -50.73 13.29 21.45 0.28 -50.44 16 18 Si 0.95 42.31 29.54 68.60 2.03 44.34 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 22 C 0.09 3.87 4.46 38.18 0.17 4.04 16 23 C -0.09 -3.63 9.96 22.38 0.22 -3.41 16 24 C -0.15 -4.64 10.04 22.27 0.22 -4.42 16 25 C -0.08 -1.97 10.04 22.28 0.22 -1.75 16 26 C -0.20 -5.92 9.04 22.34 0.20 -5.72 16 27 C 0.11 4.17 6.70 22.60 0.15 4.32 16 28 O -0.34 -12.49 10.24 -93.31 -0.96 -13.44 16 29 C 0.02 0.45 9.81 113.37 1.11 1.57 16 30 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.12 3.20 5.89 -2.39 -0.01 3.18 16 34 H 0.06 1.88 8.12 -2.38 -0.02 1.86 16 35 H 0.05 2.31 6.41 -2.39 -0.02 2.29 16 36 H 0.08 2.68 7.03 -2.39 -0.02 2.66 16 37 H 0.02 0.93 8.13 -2.39 -0.02 0.91 16 38 H 0.09 2.60 6.57 -2.39 -0.02 2.58 16 39 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.23 7.32 -2.38 -0.02 2.21 16 41 H 0.03 1.78 5.71 -2.39 -0.01 1.76 16 42 H 0.01 0.45 8.01 -2.38 -0.02 0.43 16 43 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 45 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 46 H 0.17 2.77 8.06 -2.91 -0.02 2.74 16 47 H 0.16 3.38 6.30 -2.91 -0.02 3.36 16 48 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 49 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 50 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -73.11 414.11 4.60 -68.52 By element: Atomic # 1 Polarization: 27.43 SS G_CDS: 0.94 Total: 28.37 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: 7.73 Total: 3.31 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -5.10 Total: -101.88 kcal Atomic # 8 Polarization: -41.66 SS G_CDS: -1.00 Total: -42.66 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -73.11 4.60 -68.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293088679.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.054 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds