Wall clock time and date at job start Wed Apr 1 2020 05:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31519 * 119.99563 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00432 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46756 * 59.99920 * 8 6 4 10 10 H 1.48490 * 109.47381 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47117 * 300.00527 * 8 6 4 12 12 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 13 13 S 1.81401 * 109.47149 * 300.00121 * 12 2 1 14 14 O 1.42093 * 110.54547 * 291.62539 * 13 12 2 15 15 O 1.42105 * 110.53941 * 68.37879 * 13 12 2 16 16 N 1.65595 * 104.44822 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00123 * 65.00073 * 16 13 12 18 18 H 1.08997 * 110.28713 * 334.32702 * 17 16 13 19 19 C 1.54264 * 110.32107 * 96.44923 * 17 16 13 20 20 C 1.54382 * 105.05642 * 118.90072 * 19 17 16 21 21 N 1.48562 * 104.59660 * 23.85135 * 20 19 17 22 22 C 1.46897 * 111.00211 * 200.95615 * 21 20 19 23 23 C 1.54267 * 110.03424 * 177.03914 * 22 21 20 24 24 C 1.54881 * 104.19700 * 217.10806 * 23 22 21 25 25 C 1.54890 * 102.75100 * 37.94741 * 24 23 22 26 26 C 1.53880 * 110.02848 * 59.87532 * 22 21 20 27 27 C 1.48558 * 104.22284 * 320.51825 * 21 20 19 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 0.97002 * 119.99731 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 2 1 37 37 H 0.96997 * 120.00334 * 245.00088 * 16 13 12 38 38 H 1.09002 * 110.32693 * 237.78977 * 19 17 16 39 39 H 1.08995 * 110.32616 * 0.02562 * 19 17 16 40 40 H 1.09003 * 110.41142 * 142.63045 * 20 19 17 41 41 H 1.08997 * 110.41170 * 265.07185 * 20 19 17 42 42 H 1.08998 * 110.02209 * 298.48977 * 22 21 20 43 43 H 1.09004 * 110.48256 * 335.78945 * 23 22 21 44 44 H 1.08997 * 110.48373 * 98.42979 * 23 22 21 45 45 H 1.09004 * 110.76047 * 279.62811 * 24 23 22 46 46 H 1.09009 * 110.91263 * 156.33199 * 24 23 22 47 47 H 1.09000 * 110.48692 * 203.38418 * 25 24 23 48 48 H 1.08997 * 110.60553 * 80.78606 * 25 24 23 49 49 H 1.08999 * 110.03514 * 238.56614 * 26 22 21 50 50 H 1.08999 * 110.02955 * 359.95263 * 26 22 21 51 51 H 1.09004 * 110.40821 * 280.70297 * 27 21 20 52 52 H 1.08997 * 110.41074 * 158.25790 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.8283 -2.5196 -4.0082 10 1 1.8270 -0.4198 -5.2204 11 1 3.8076 -1.1187 -4.0077 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 8 2.0479 1.4100 2.8544 15 8 0.0280 -0.0184 2.8543 16 7 2.0530 -0.7408 3.9935 17 6 3.5014 -0.7981 4.2059 18 1 4.0281 -0.6298 3.2666 19 6 3.9307 0.2475 5.2557 20 6 4.5539 -0.5718 6.4063 21 7 4.9903 -1.8407 5.7687 22 6 5.1431 -2.9066 6.7679 23 6 5.5242 -4.2307 6.0741 24 6 4.7651 -5.3139 6.8798 25 6 3.4169 -4.6210 7.1984 26 6 3.8032 -3.1548 7.4828 27 6 3.9012 -2.1612 4.8105 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1615 -3.4844 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 1.4558 -1.2152 4.5929 38 1 4.6696 0.9279 4.8322 39 1 3.0639 0.8031 5.6132 40 1 5.4094 -0.0446 6.8284 41 1 3.8100 -0.7703 7.1778 42 1 5.9080 -2.6309 7.4937 43 1 5.1935 -4.2260 5.0354 44 1 6.6000 -4.3959 6.1322 45 1 5.3000 -5.5587 7.7975 46 1 4.6067 -6.2080 6.2766 47 1 2.9550 -5.0710 8.0772 48 1 2.7441 -4.6791 6.3429 49 1 3.9182 -3.0003 8.5557 50 1 3.0400 -2.4837 7.0889 51 1 3.0552 -2.6084 5.3324 52 1 4.2653 -2.8306 4.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332394992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:56 Heat of formation + Delta-G solvation = -72.735744 kcal Electronic energy + Delta-G solvation = -30170.545978 eV Core-core repulsion = 26296.726480 eV Total energy + Delta-G solvation = -3873.819498 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.32847 -37.28262 -36.47584 -36.27274 -35.29559 -34.03537 -31.66723 -30.46067 -29.14068 -28.39079 -26.66552 -26.44024 -25.71467 -25.22356 -22.50562 -21.45770 -20.47315 -19.74187 -19.37234 -18.70079 -17.42669 -17.24873 -16.07060 -15.95067 -15.68335 -15.47802 -15.21920 -14.77321 -14.69476 -14.27044 -13.96745 -13.37455 -13.18706 -13.03976 -12.91313 -12.77964 -12.50279 -12.39532 -12.08651 -12.04840 -11.80709 -11.48983 -11.42938 -11.35331 -11.28479 -11.20374 -11.05355 -11.01162 -10.95016 -10.89503 -10.83509 -10.74540 -10.66806 -10.39684 -10.27114 -10.10964 -9.66294 -9.64175 -9.26323 -8.68339 -8.64160 -8.39788 -6.03283 -4.15399 0.85967 3.14504 3.27202 3.32743 3.34312 3.75931 4.21151 4.28448 4.32216 4.36787 4.41383 4.59838 4.66427 4.79290 4.93786 5.05775 5.08648 5.15240 5.18219 5.20966 5.22733 5.25502 5.33358 5.38033 5.47879 5.56385 5.60373 5.66663 5.68391 5.74311 5.76766 5.80064 5.84220 5.94976 6.03766 6.09588 6.17392 6.37807 6.62824 6.70556 6.79689 6.82249 6.90580 7.01720 7.11793 7.31673 7.50486 7.67785 7.98176 8.09529 8.33049 8.82896 9.50031 10.98009 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.002996 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.578091 B = 9344.962586 C =10217.408789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.083 3.917 3 C -0.164 4.164 4 C -0.503 4.503 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.582 4.582 13 S 2.592 3.408 14 O -0.960 6.960 15 O -0.966 6.966 16 N -1.124 6.124 17 C 0.149 3.851 18 H 0.098 0.902 19 C -0.138 4.138 20 C 0.028 3.972 21 N -0.501 5.501 22 C 0.070 3.930 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.162 4.162 27 C 0.021 3.979 28 H 0.027 0.973 29 H 0.095 0.905 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.095 0.905 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.409 0.591 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.071 0.929 51 H 0.062 0.938 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.428 -8.619 19.718 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.716 4.716 13 S 2.690 3.310 14 O -0.950 6.950 15 O -0.957 6.957 16 N -0.880 5.880 17 C 0.041 3.959 18 H 0.116 0.884 19 C -0.178 4.178 20 C -0.100 4.100 21 N -0.224 5.224 22 C -0.039 4.039 23 C -0.156 4.156 24 C -0.163 4.163 25 C -0.162 4.162 26 C -0.201 4.201 27 C -0.108 4.108 28 H 0.046 0.954 29 H 0.114 0.886 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.104 0.896 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.080 0.920 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 7.453 -7.547 19.312 22.033 hybrid contribution -0.306 -1.382 -0.377 1.465 sum 7.147 -8.929 18.935 22.121 Atomic orbital electron populations 1.22278 0.96971 1.00610 1.02309 1.17913 0.92771 0.92205 0.89030 1.22275 0.99715 0.97793 1.02353 1.20909 1.31789 1.12110 0.89426 0.92353 1.24938 0.94883 0.94975 0.98924 1.69795 1.36258 1.22545 1.23587 0.86595 0.79177 0.79697 0.82148 1.20289 1.21195 1.20238 1.30531 1.11210 1.12888 1.16963 1.05674 0.74359 0.75350 0.75600 1.93550 1.78010 1.38012 1.85456 1.93553 1.29602 1.86717 1.85792 1.56060 1.13474 1.70939 1.47513 1.21402 0.79937 0.94746 0.99836 0.88438 1.22838 1.01566 0.97903 0.95490 1.23192 0.99298 0.90989 0.96545 1.65603 1.40041 1.02655 1.14101 1.22532 0.96313 0.91890 0.93204 1.22447 1.00381 0.92792 0.99964 1.22503 0.95875 0.97952 1.00005 1.22345 0.97495 0.94937 1.01377 1.22903 0.98679 0.97512 1.01015 1.23503 0.93965 0.96794 0.96575 0.95404 0.88643 0.94498 0.94469 0.88673 0.95311 0.92687 0.86505 0.86286 0.75793 0.89838 0.90116 0.89978 0.93311 0.89622 0.90607 0.91231 0.91575 0.91406 0.91821 0.91543 0.91655 0.91011 0.92042 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 2 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 3 C -0.16 -4.01 7.77 37.16 0.29 -3.72 16 4 C -0.50 -13.14 8.01 -34.44 -0.28 -13.42 16 5 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 6 C 0.06 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 8 Si 0.90 20.59 29.54 -169.99 -5.02 15.57 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 C -0.58 -11.14 4.91 37.16 0.18 -10.95 16 13 S 2.59 46.76 4.43 -107.50 -0.48 46.28 16 14 O -0.96 -19.62 15.44 -57.54 -0.89 -20.51 16 15 O -0.97 -20.02 15.70 -57.54 -0.90 -20.92 16 16 N -1.12 -14.64 5.34 -3.71 -0.02 -14.66 16 17 C 0.15 1.76 3.48 -66.55 -0.23 1.53 16 18 H 0.10 1.18 7.23 -51.93 -0.38 0.80 16 19 C -0.14 -1.56 6.79 -25.35 -0.17 -1.73 16 20 C 0.03 0.26 6.24 -2.18 -0.01 0.24 16 21 N -0.50 -4.77 5.44 -220.69 -1.20 -5.97 16 22 C 0.07 0.56 3.13 -66.59 -0.21 0.35 16 23 C -0.12 -0.90 6.32 -25.08 -0.16 -1.05 16 24 C -0.13 -0.83 6.91 -24.74 -0.17 -1.01 16 25 C -0.12 -0.87 6.71 -25.07 -0.17 -1.04 16 26 C -0.16 -1.21 4.85 -25.61 -0.12 -1.33 16 27 C 0.02 0.21 5.07 -2.18 -0.01 0.19 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.37 16 29 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 30 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16 33 H 0.03 0.67 5.46 -51.93 -0.28 0.38 16 34 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.12 2.01 7.47 -51.92 -0.39 1.62 16 36 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 37 H 0.41 4.50 8.57 -34.47 -0.30 4.20 16 38 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.96 7.95 -51.93 -0.41 0.55 16 40 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.42 6.14 -51.93 -0.32 0.10 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.08 0.64 6.25 -51.93 -0.32 0.31 16 44 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.43 8.14 -51.92 -0.42 0.01 16 47 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.49 7.92 -51.93 -0.41 0.08 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.07 0.59 5.03 -51.93 -0.26 0.33 16 51 H 0.06 0.56 5.17 -51.93 -0.27 0.29 16 52 H 0.09 0.87 7.09 -51.93 -0.37 0.50 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -30.91 387.69 -11.91 -42.82 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -8.81 Total: 7.26 kcal Atomic # 6 Polarization: -31.19 SS G_CDS: -0.95 Total: -32.14 kcal Atomic # 7 Polarization: -43.50 SS G_CDS: -0.70 Total: -44.21 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -1.79 Total: -41.43 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Atomic # 16 Polarization: 46.76 SS G_CDS: -0.48 Total: 46.28 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.91 -11.91 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.917 kcal (2) G-P(sol) polarization free energy of solvation -30.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds