Wall clock time and date at job start Wed Apr 1 2020 05:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00432 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31519 * 119.99563 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00432 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46756 * 59.99920 * 8 6 4 10 10 H 1.48490 * 109.47381 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47117 * 300.00527 * 8 6 4 12 12 C 1.52997 * 109.47127 * 119.99936 * 2 1 3 13 13 S 1.81401 * 109.47149 * 300.00121 * 12 2 1 14 14 O 1.42093 * 110.54547 * 291.62539 * 13 12 2 15 15 O 1.42105 * 110.53941 * 68.37879 * 13 12 2 16 16 N 1.65595 * 104.44822 * 179.97438 * 13 12 2 17 17 C 1.46502 * 120.00123 * 65.00073 * 16 13 12 18 18 H 1.08997 * 110.28713 * 334.32702 * 17 16 13 19 19 C 1.54264 * 110.32107 * 96.44923 * 17 16 13 20 20 C 1.54382 * 105.05642 * 118.90072 * 19 17 16 21 21 N 1.48562 * 104.59660 * 23.85135 * 20 19 17 22 22 C 1.46897 * 111.00211 * 200.95615 * 21 20 19 23 23 C 1.54267 * 110.03424 * 177.03914 * 22 21 20 24 24 C 1.54881 * 104.19700 * 217.10806 * 23 22 21 25 25 C 1.54890 * 102.75100 * 37.94741 * 24 23 22 26 26 C 1.53880 * 110.02848 * 59.87532 * 22 21 20 27 27 C 1.48558 * 104.22284 * 320.51825 * 21 20 19 28 28 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 29 29 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46716 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47486 * 299.99829 * 3 2 1 33 33 H 1.09001 * 109.47362 * 60.00551 * 3 2 1 34 34 H 0.97002 * 119.99731 * 180.02562 * 7 6 4 35 35 H 1.09002 * 109.47153 * 180.02562 * 12 2 1 36 36 H 1.09001 * 109.46832 * 60.00321 * 12 2 1 37 37 H 0.96997 * 120.00334 * 245.00088 * 16 13 12 38 38 H 1.09002 * 110.32693 * 237.78977 * 19 17 16 39 39 H 1.08995 * 110.32616 * 0.02562 * 19 17 16 40 40 H 1.09003 * 110.41142 * 142.63045 * 20 19 17 41 41 H 1.08997 * 110.41170 * 265.07185 * 20 19 17 42 42 H 1.08998 * 110.02209 * 298.48977 * 22 21 20 43 43 H 1.09004 * 110.48256 * 335.78945 * 23 22 21 44 44 H 1.08997 * 110.48373 * 98.42979 * 23 22 21 45 45 H 1.09004 * 110.76047 * 279.62811 * 24 23 22 46 46 H 1.09009 * 110.91263 * 156.33199 * 24 23 22 47 47 H 1.09000 * 110.48692 * 203.38418 * 25 24 23 48 48 H 1.08997 * 110.60553 * 80.78606 * 25 24 23 49 49 H 1.08999 * 110.03514 * 238.56614 * 26 22 21 50 50 H 1.08999 * 110.02955 * 359.95263 * 26 22 21 51 51 H 1.09004 * 110.40821 * 280.70297 * 27 21 20 52 52 H 1.08997 * 110.41074 * 158.25790 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3226 -1.1193 -4.0080 9 1 1.8283 -2.5196 -4.0082 10 1 1.8270 -0.4198 -5.2204 11 1 3.8076 -1.1187 -4.0077 12 6 2.0401 -0.7212 1.2492 13 16 1.4354 0.1339 2.7304 14 8 2.0479 1.4100 2.8544 15 8 0.0280 -0.0184 2.8543 16 7 2.0530 -0.7408 3.9935 17 6 3.5014 -0.7981 4.2059 18 1 4.0281 -0.6298 3.2666 19 6 3.9307 0.2475 5.2557 20 6 4.5539 -0.5718 6.4063 21 7 4.9903 -1.8407 5.7687 22 6 5.1431 -2.9066 6.7679 23 6 5.5242 -4.2307 6.0741 24 6 4.7651 -5.3139 6.8798 25 6 3.4169 -4.6210 7.1984 26 6 3.8032 -3.1548 7.4828 27 6 3.9012 -2.1612 4.8105 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 0.7089 1.1615 -3.4844 35 1 3.1301 -0.7208 1.2495 36 1 1.6767 -1.7489 1.2492 37 1 1.4558 -1.2152 4.5929 38 1 4.6696 0.9279 4.8322 39 1 3.0639 0.8031 5.6132 40 1 5.4094 -0.0446 6.8284 41 1 3.8100 -0.7703 7.1778 42 1 5.9080 -2.6309 7.4937 43 1 5.1935 -4.2260 5.0354 44 1 6.6000 -4.3959 6.1322 45 1 5.3000 -5.5587 7.7975 46 1 4.6067 -6.2080 6.2766 47 1 2.9550 -5.0710 8.0772 48 1 2.7441 -4.6791 6.3429 49 1 3.9182 -3.0003 8.5557 50 1 3.0400 -2.4837 7.0889 51 1 3.0552 -2.6084 5.3324 52 1 4.2653 -2.8306 4.0312 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332394992.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:37:55 Heat of formation + Delta-G solvation = -93.601121 kcal Electronic energy + Delta-G solvation = -30171.450769 eV Core-core repulsion = 26296.726480 eV Total energy + Delta-G solvation = -3874.724288 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.04428 -38.22247 -38.11567 -37.84831 -36.87048 -34.95730 -33.62606 -31.25818 -29.73854 -29.17115 -28.32305 -27.68412 -27.25796 -27.14053 -23.25086 -22.23268 -21.42571 -21.14463 -20.35170 -19.90709 -18.84139 -18.12318 -17.84680 -16.89394 -16.79844 -16.72105 -16.58132 -16.21251 -15.80018 -15.11784 -14.99248 -14.68611 -14.55052 -14.41535 -14.12605 -13.83448 -13.76842 -13.63880 -13.38391 -13.17452 -13.00564 -12.87203 -12.85185 -12.78270 -12.50330 -12.49561 -12.21093 -12.16590 -12.11854 -11.97674 -11.95787 -11.87816 -11.85857 -11.66771 -11.54774 -11.42464 -11.35655 -11.34219 -10.69169 -10.40377 -10.33078 -9.34129 -8.02244 -6.20922 -0.60329 1.46144 1.46447 1.53644 1.87116 2.44962 2.84356 3.03649 3.20009 3.34744 3.52172 3.62482 3.76372 3.88837 3.97613 4.02587 4.09507 4.18043 4.31020 4.39549 4.43993 4.52473 4.57837 4.61059 4.62570 4.66218 4.77425 4.82018 4.86572 4.87618 4.91800 4.95818 4.99373 5.04089 5.07660 5.09348 5.15786 5.21096 5.24460 5.30958 5.39707 5.40848 5.50695 5.51603 5.65301 5.87442 5.98322 6.11201 6.12722 6.15117 6.35018 6.83834 7.47435 8.97410 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.002996 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.578091 B = 9344.962586 C =10217.408789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.071 3.929 3 C -0.160 4.160 4 C -0.518 4.518 5 H 0.064 0.936 6 C 0.018 3.982 7 N -0.908 5.908 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.587 4.587 13 S 2.614 3.386 14 O -0.986 6.986 15 O -0.994 6.994 16 N -1.105 6.105 17 C 0.139 3.861 18 H 0.095 0.905 19 C -0.142 4.142 20 C 0.033 3.967 21 N -0.508 5.508 22 C 0.069 3.931 23 C -0.118 4.118 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.159 4.159 27 C 0.026 3.974 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.040 0.960 32 H 0.070 0.930 33 H 0.033 0.967 34 H 0.261 0.739 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.422 0.578 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.090 0.910 43 H 0.067 0.933 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.065 0.935 51 H 0.071 0.929 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.608 -10.396 21.112 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.069 3.931 3 C -0.218 4.218 4 C -0.557 4.557 5 H 0.082 0.918 6 C -0.182 4.182 7 N -0.547 5.547 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.196 1.196 12 C -0.719 4.719 13 S 2.711 3.289 14 O -0.975 6.975 15 O -0.984 6.984 16 N -0.865 5.865 17 C 0.031 3.969 18 H 0.113 0.887 19 C -0.182 4.182 20 C -0.094 4.094 21 N -0.232 5.232 22 C -0.040 4.040 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.162 4.162 26 C -0.198 4.198 27 C -0.103 4.103 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.154 0.846 36 H 0.156 0.844 37 H 0.258 0.742 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.632 -9.337 20.710 24.302 hybrid contribution -0.644 -0.825 -0.738 1.281 sum 7.988 -10.162 19.972 23.790 Atomic orbital electron populations 1.22216 0.97868 1.00463 1.01306 1.17897 0.92229 0.92139 0.90881 1.22205 0.99824 0.98373 1.01351 1.21282 1.31691 1.12338 0.90425 0.91819 1.25679 0.95184 0.95646 1.01678 1.69942 1.37187 1.23681 1.23886 0.85679 0.78784 0.78731 0.78836 1.19695 1.21407 1.19648 1.30464 1.12520 1.13437 1.15526 1.04738 0.73419 0.74982 0.75749 1.93516 1.78311 1.39828 1.85880 1.93508 1.31549 1.87100 1.86266 1.55547 1.14460 1.70491 1.45972 1.21635 0.78638 0.96372 1.00210 0.88687 1.22841 1.01285 0.97953 0.96121 1.23157 0.99735 0.90693 0.95856 1.65621 1.39799 1.03128 1.14627 1.22591 0.96805 0.91586 0.93011 1.22445 1.00688 0.92913 0.99570 1.22488 0.95550 0.97685 1.00227 1.22353 0.97629 0.94752 1.01478 1.22870 0.98027 0.97608 1.01320 1.23455 0.94495 0.95476 0.96877 0.94948 0.91077 0.94134 0.94097 0.91150 0.94805 0.92948 0.84615 0.84443 0.74239 0.90349 0.90896 0.89135 0.92465 0.89151 0.91432 0.90961 0.90810 0.91145 0.91172 0.92049 0.90969 0.91698 0.91134 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.98 7.78 71.98 0.56 -7.42 16 2 C 0.07 3.38 0.52 -52.93 -0.03 3.35 16 3 C -0.16 -7.89 7.77 71.98 0.56 -7.34 16 4 C -0.52 -26.81 8.01 25.60 0.21 -26.61 16 5 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 6 C 0.02 0.93 5.15 84.65 0.44 1.36 16 7 N -0.91 -50.35 9.35 21.45 0.20 -50.15 16 8 Si 0.95 41.98 29.54 68.60 2.03 44.01 16 9 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 C -0.59 -21.67 4.91 71.98 0.35 -21.32 16 13 S 2.61 91.81 4.43 -56.49 -0.25 91.56 16 14 O -0.99 -39.76 15.44 -127.65 -1.97 -41.73 16 15 O -0.99 -40.47 15.70 -127.65 -2.00 -42.47 16 16 N -1.10 -26.92 5.34 -165.66 -0.88 -27.81 16 17 C 0.14 3.05 3.48 45.89 0.16 3.21 16 18 H 0.10 2.14 7.23 -2.39 -0.02 2.13 16 19 C -0.14 -3.02 6.79 31.49 0.21 -2.81 16 20 C 0.03 0.55 6.24 86.45 0.54 1.09 16 21 N -0.51 -8.59 5.44 -852.12 -4.64 -13.22 16 22 C 0.07 0.95 3.13 45.64 0.14 1.09 16 23 C -0.12 -1.54 6.32 31.67 0.20 -1.34 16 24 C -0.12 -1.34 6.91 31.88 0.22 -1.12 16 25 C -0.12 -1.46 6.71 31.67 0.21 -1.25 16 26 C -0.16 -2.00 4.85 31.32 0.15 -1.84 16 27 C 0.03 0.46 5.07 86.45 0.44 0.90 16 28 H 0.03 1.53 5.46 -2.39 -0.01 1.52 16 29 H 0.07 3.86 6.07 -2.39 -0.01 3.85 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 3.81 6.07 -2.39 -0.01 3.80 16 33 H 0.03 1.59 5.46 -2.39 -0.01 1.58 16 34 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 35 H 0.14 4.43 7.47 -2.39 -0.02 4.41 16 36 H 0.14 4.51 8.14 -2.39 -0.02 4.49 16 37 H 0.42 8.42 8.57 -96.75 -0.83 7.59 16 38 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.07 1.66 7.95 -2.39 -0.02 1.64 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 0.86 6.14 -2.39 -0.01 0.85 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.07 1.00 6.25 -2.38 -0.01 0.98 16 44 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.06 0.78 7.92 -2.39 -0.02 0.77 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.06 0.91 5.03 -2.39 -0.01 0.90 16 51 H 0.07 1.11 5.17 -2.38 -0.01 1.10 16 52 H 0.09 1.61 7.09 -2.39 -0.02 1.59 16 Total: -1.00 -65.32 387.69 -3.07 -68.39 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.09 Total: 31.46 kcal Atomic # 6 Polarization: -64.40 SS G_CDS: 4.36 Total: -60.03 kcal Atomic # 7 Polarization: -85.85 SS G_CDS: -5.32 Total: -91.18 kcal Atomic # 8 Polarization: -80.23 SS G_CDS: -3.97 Total: -84.21 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Atomic # 16 Polarization: 91.81 SS G_CDS: -0.25 Total: 91.56 kcal Total: -65.32 -3.07 -68.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332394992.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.209 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds