Wall clock time and date at job start Wed Apr 1 2020 05:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46840 * 111.00314 * 2 1 4 4 C 1.53039 * 109.50527 * 185.90252 * 3 2 1 5 5 C 1.53156 * 109.54844 * 300.96210 * 4 3 2 6 6 C 1.53109 * 109.16794 * 57.13939 * 5 4 3 7 7 H 1.09001 * 109.57308 * 63.21839 * 6 5 4 8 8 C 1.53230 * 109.25401 * 183.26871 * 6 5 4 9 9 N 1.46923 * 108.76264 * 174.27925 * 8 6 5 10 10 S 1.65608 * 120.62912 * 126.36995 * 9 8 6 11 11 O 1.42105 * 104.27567 * 206.06737 * 10 9 8 12 12 O 1.42099 * 104.27801 * 333.92707 * 10 9 8 13 13 C 1.81397 * 104.44917 * 89.99778 * 10 9 8 14 14 C 1.53002 * 109.47293 * 179.97438 * 13 10 9 15 15 C 1.52995 * 109.47225 * 300.00230 * 14 13 10 16 16 C 1.53003 * 109.46839 * 59.99943 * 14 13 10 17 17 C 1.50702 * 109.47210 * 179.97438 * 14 13 10 18 18 H 1.07998 * 120.00272 * 0.02562 * 17 14 13 19 19 C 1.37882 * 119.99776 * 179.97438 * 17 14 13 20 20 N 1.31509 * 119.99723 * 0.02562 * 19 17 14 21 21 Si 1.86794 * 119.99713 * 180.02562 * 19 17 14 22 22 H 1.48499 * 109.47150 * 60.00295 * 21 19 17 23 23 H 1.48506 * 109.46728 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47079 * 300.00002 * 21 19 17 25 25 C 1.46918 * 118.73791 * 306.63797 * 9 8 6 26 26 C 1.52721 * 108.78461 * 53.82955 * 25 9 8 27 27 C 1.46847 * 111.00552 * 124.27508 * 2 1 3 28 28 H 1.08999 * 109.46082 * 294.24432 * 27 2 1 29 29 H 1.09003 * 109.46688 * 295.72489 * 1 2 3 30 30 H 1.08998 * 109.47322 * 55.72476 * 1 2 3 31 31 H 1.08999 * 109.47079 * 175.72867 * 1 2 3 32 32 H 1.08997 * 109.46773 * 305.91835 * 3 2 1 33 33 H 1.09001 * 109.45910 * 65.89799 * 3 2 1 34 34 H 1.09007 * 109.50480 * 60.70190 * 4 3 2 35 35 H 1.08996 * 109.50639 * 180.78758 * 4 3 2 36 36 H 1.09000 * 109.22840 * 297.41147 * 5 4 3 37 37 H 1.09002 * 109.82754 * 177.22679 * 5 4 3 38 38 H 1.08998 * 109.59029 * 54.49336 * 8 6 5 39 39 H 1.09001 * 109.58473 * 294.06396 * 8 6 5 40 40 H 1.09001 * 109.47492 * 299.99928 * 13 10 9 41 41 H 1.09001 * 109.47146 * 59.99771 * 13 10 9 42 42 H 1.09003 * 109.47406 * 59.99684 * 15 14 13 43 43 H 1.08998 * 109.47432 * 179.97438 * 15 14 13 44 44 H 1.09001 * 109.46960 * 299.99735 * 15 14 13 45 45 H 1.08996 * 109.47146 * 60.00068 * 16 14 13 46 46 H 1.08998 * 109.47039 * 180.02562 * 16 14 13 47 47 H 1.09006 * 109.46851 * 300.00362 * 16 14 13 48 48 H 0.97001 * 119.99602 * 179.97438 * 20 19 17 49 49 H 1.09003 * 109.59083 * 173.08949 * 25 9 8 50 50 H 1.08997 * 109.58772 * 293.51860 * 25 9 8 51 51 H 1.09009 * 109.27279 * 185.18570 * 26 25 9 52 52 H 1.08995 * 109.98388 * 64.95894 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3336 -0.1483 5 6 4.1260 0.5337 1.0075 6 6 3.5188 -0.8718 1.0205 7 1 3.7838 -1.3926 0.1004 8 6 4.0644 -1.6469 2.2244 9 7 3.3737 -2.9411 2.3057 10 16 4.2345 -4.3544 2.3694 11 8 3.3507 -5.3277 1.8301 12 8 5.4638 -4.0452 1.7272 13 6 4.4972 -4.6450 4.1406 14 6 5.2910 -5.9388 4.3330 15 6 4.5099 -7.1102 3.7343 16 6 6.6444 -5.8159 3.6301 17 6 5.5097 -6.1798 5.8044 18 1 5.1210 -5.4805 6.5299 19 6 6.2051 -7.2938 6.2246 20 7 6.6779 -8.1456 5.3412 21 14 6.4756 -7.5930 8.0485 22 1 5.1620 -7.7117 8.7308 23 1 7.2462 -8.8487 8.2351 24 1 7.2342 -6.4562 8.6294 25 6 1.9047 -2.9578 2.3235 26 6 1.3894 -2.1777 1.1160 27 6 1.9953 -0.7720 1.1328 28 1 1.7315 -0.2738 2.0657 29 1 -0.3633 0.4461 0.9259 30 1 -0.3634 0.5787 -0.8492 31 1 -0.3633 -1.0248 -0.0765 32 1 1.5626 1.9260 -0.8322 33 1 1.7336 1.8603 0.9382 34 1 3.7801 0.8554 -1.0922 35 1 3.9100 2.3505 -0.1343 36 1 3.9020 1.0359 1.9486 37 1 5.2062 0.4625 0.8799 38 1 3.8845 -1.0786 3.1370 39 1 5.1347 -1.8111 2.0987 40 1 5.0533 -3.8103 4.5673 41 1 3.5329 -4.7329 4.6413 42 1 4.3521 -6.9356 2.6700 43 1 5.0756 -8.0318 3.8709 44 1 3.5457 -7.1977 4.2350 45 1 7.2009 -4.9814 4.0566 46 1 7.2098 -6.7377 3.7668 47 1 6.4865 -5.6412 2.5658 48 1 7.1675 -8.9291 5.6368 49 1 1.5502 -3.9868 2.2621 50 1 1.5452 -2.4996 3.2448 51 1 0.3030 -2.1062 1.1707 52 1 1.6746 -2.6858 0.1948 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332698163.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:04 Heat of formation + Delta-G solvation = -72.243373 kcal Electronic energy + Delta-G solvation = -30660.537757 eV Core-core repulsion = 26786.739610 eV Total energy + Delta-G solvation = -3873.798147 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.17818 -36.69526 -36.60025 -36.24747 -35.24531 -34.27844 -31.66204 -31.51201 -30.35772 -26.88711 -26.65640 -25.71201 -25.23233 -24.96425 -23.83618 -21.84597 -20.92670 -19.97153 -19.42243 -18.26570 -17.43263 -16.08015 -16.01442 -15.72723 -15.49251 -15.40691 -14.89857 -14.75429 -14.64642 -14.30546 -14.16706 -13.59311 -13.21186 -13.13154 -12.97775 -12.85776 -12.62825 -12.50076 -12.39375 -12.10572 -11.96943 -11.70982 -11.53970 -11.42462 -11.19215 -11.18059 -11.07973 -11.02390 -10.93822 -10.84386 -10.68127 -10.41324 -10.32666 -10.27211 -10.16580 -10.09297 -9.64820 -9.56428 -8.92129 -8.60961 -8.53747 -8.40013 -6.03318 -4.15494 0.84220 3.09577 3.26621 3.32177 3.33690 3.62302 4.33795 4.41022 4.42156 4.49926 4.60844 4.71290 4.81286 4.91895 4.99639 5.07629 5.12673 5.19216 5.21657 5.22437 5.29826 5.38002 5.47624 5.51279 5.57749 5.58568 5.64043 5.69094 5.69959 5.73900 5.76867 5.80367 5.92048 5.96309 6.11005 6.25912 6.31601 6.38855 6.70997 6.71194 6.80220 6.85525 6.89386 6.91321 7.04932 7.31681 7.50790 7.67658 7.98281 8.09796 8.33239 8.82791 9.49830 10.97941 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024037 B = 0.002859 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.587506 B = 9792.019245 C = 9975.929635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.541 5.541 3 C 0.057 3.943 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.091 4.091 7 H 0.086 0.914 8 C 0.123 3.877 9 N -1.009 6.009 10 S 2.592 3.408 11 O -0.961 6.961 12 O -0.961 6.961 13 C -0.582 4.582 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.503 4.503 18 H 0.058 0.942 19 C 0.065 3.935 20 N -0.884 5.884 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.277 1.277 25 C 0.119 3.881 26 C -0.127 4.127 27 C 0.094 3.906 28 H 0.042 0.958 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.116 0.884 42 H 0.028 0.972 43 H 0.095 0.905 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.095 0.905 47 H 0.028 0.972 48 H 0.263 0.737 49 H 0.097 0.903 50 H 0.065 0.935 51 H 0.074 0.926 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.371 18.219 -8.215 22.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.265 5.265 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.111 4.111 7 H 0.104 0.896 8 C -0.003 4.003 9 N -0.844 5.844 10 S 2.692 3.308 11 O -0.952 6.952 12 O -0.952 6.952 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.203 1.203 25 C -0.007 4.007 26 C -0.166 4.166 27 C -0.014 4.014 28 H 0.060 0.940 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.046 0.954 48 H 0.073 0.927 49 H 0.115 0.885 50 H 0.083 0.917 51 H 0.093 0.907 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -9.861 17.325 -9.437 22.056 hybrid contribution -0.309 0.526 2.488 2.562 sum -10.170 17.851 -6.949 21.688 Atomic orbital electron populations 1.22419 0.87475 1.02594 1.00175 1.61878 1.07441 1.13364 1.43798 1.22076 0.95772 0.89068 1.00178 1.21573 0.94241 1.00019 0.99603 1.21617 1.00494 0.94810 0.98631 1.21530 0.93850 0.95938 0.99782 0.89583 1.21468 0.97654 0.83664 0.97529 1.58002 1.14790 1.21594 1.90048 1.05721 0.73547 0.72238 0.79294 1.93525 1.65519 1.58421 1.77717 1.93525 1.44724 1.82999 1.73906 1.30581 1.09855 1.09968 1.21158 1.17923 0.90585 0.85732 0.97766 1.22271 0.99623 1.03505 0.96711 1.22272 0.99775 1.03671 0.96379 1.20916 1.35378 1.08037 0.89944 0.92393 1.24938 0.95276 0.95809 0.97691 1.69792 1.36668 1.12706 1.32996 0.86598 0.78277 0.77569 0.85186 1.20279 1.21161 1.20279 1.21312 0.79301 1.02329 0.97772 1.21955 1.00032 0.94920 0.99738 1.21589 0.94675 0.93815 0.91300 0.94019 0.95834 0.91588 0.90722 0.90900 0.95120 0.90990 0.91469 0.92079 0.90982 0.91761 0.88404 0.86519 0.86520 0.95356 0.88663 0.94514 0.94508 0.88669 0.95365 0.92675 0.88453 0.91687 0.90738 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.05 60.06 0.54 0.71 16 2 N -0.54 -5.21 4.74 -234.86 -1.11 -6.33 16 3 C 0.06 0.47 5.47 -3.84 -0.02 0.45 16 4 C -0.12 -0.95 6.08 -26.63 -0.16 -1.11 16 5 C -0.12 -1.05 5.30 -26.59 -0.14 -1.20 16 6 C -0.09 -1.01 2.31 -90.40 -0.21 -1.22 16 7 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 8 C 0.12 1.51 5.71 -3.69 -0.02 1.49 16 9 N -1.01 -14.36 3.22 -113.78 -0.37 -14.73 16 10 S 2.59 48.48 4.49 -107.50 -0.48 48.00 16 11 O -0.96 -20.11 14.20 -57.54 -0.82 -20.93 16 12 O -0.96 -20.12 14.21 -57.54 -0.82 -20.93 16 13 C -0.58 -11.43 5.12 37.16 0.19 -11.24 16 14 C 0.08 2.00 0.52 -155.66 -0.08 1.92 16 15 C -0.16 -4.04 7.78 37.16 0.29 -3.75 16 16 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 17 C -0.50 -13.27 8.01 -34.44 -0.28 -13.55 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.73 5.15 -17.82 -0.09 1.63 16 20 N -0.88 -24.19 9.35 55.43 0.52 -23.67 16 21 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 C 0.12 1.43 6.40 -3.96 -0.03 1.41 16 26 C -0.13 -1.38 4.97 -26.83 -0.13 -1.51 16 27 C 0.09 0.98 1.68 -67.66 -0.11 0.86 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 31 H 0.07 0.58 6.18 -51.93 -0.32 0.25 16 32 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 33 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 1.28 6.86 -51.93 -0.36 0.92 16 40 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 41 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 42 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 47 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 48 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.10 1.25 6.85 -51.93 -0.36 0.89 16 50 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 51 H 0.07 0.66 6.24 -51.92 -0.32 0.34 16 52 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 385.94 15.07 5.82 5.82 Total: -1.00 -31.07 385.94 -11.52 -42.60 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -9.28 Total: 3.40 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: 0.04 Total: -28.84 kcal Atomic # 7 Polarization: -43.77 SS G_CDS: -0.96 Total: -44.73 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -1.63 Total: -41.86 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 48.48 SS G_CDS: -0.48 Total: 48.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.07 -11.52 -42.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332698163.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.648 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds