Wall clock time and date at job start Wed Apr 1 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46866 * 110.99966 * 2 1 4 4 C 1.53008 * 109.63929 * 185.82184 * 3 2 1 5 5 C 1.53213 * 109.66753 * 301.75538 * 4 3 2 6 6 C 1.53066 * 109.36326 * 56.58253 * 5 4 3 7 7 H 1.08993 * 109.46438 * 62.37321 * 6 5 4 8 8 C 1.53033 * 109.63497 * 182.43748 * 6 5 4 9 9 N 1.46910 * 108.93568 * 65.64880 * 8 6 5 10 10 S 1.65600 * 120.68765 * 233.47683 * 9 8 6 11 11 O 1.42094 * 104.28130 * 206.06973 * 10 9 8 12 12 O 1.42107 * 104.27371 * 333.92492 * 10 9 8 13 13 C 1.81397 * 104.44983 * 89.99393 * 10 9 8 14 14 C 1.53002 * 109.47022 * 180.02562 * 13 10 9 15 15 C 1.52996 * 109.47481 * 300.00192 * 14 13 10 16 16 C 1.53004 * 109.47228 * 60.00316 * 14 13 10 17 17 C 1.50700 * 109.47076 * 179.97438 * 14 13 10 18 18 H 1.07996 * 120.00370 * 0.02562 * 17 14 13 19 19 C 1.37880 * 120.00094 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99681 * 359.97438 * 19 17 14 21 21 Si 1.86796 * 119.99970 * 180.02562 * 19 17 14 22 22 H 1.48503 * 109.47235 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46893 * 120.00123 * 21 19 17 24 24 H 1.48500 * 109.47028 * 239.99688 * 21 19 17 25 25 C 1.46949 * 118.63159 * 53.49182 * 9 8 6 26 26 C 1.53143 * 109.03906 * 306.39321 * 25 9 8 27 27 C 1.47024 * 111.00013 * 123.95653 * 2 1 3 28 28 H 1.09008 * 109.58376 * 53.32183 * 27 2 1 29 29 H 1.09002 * 109.46478 * 63.95495 * 1 2 3 30 30 H 1.08997 * 109.47118 * 183.95077 * 1 2 3 31 31 H 1.08993 * 109.47275 * 303.95780 * 1 2 3 32 32 H 1.09004 * 109.43787 * 305.87434 * 3 2 1 33 33 H 1.09002 * 109.44297 * 65.76965 * 3 2 1 34 34 H 1.09002 * 109.48951 * 61.09166 * 4 3 2 35 35 H 1.09007 * 109.49204 * 181.15785 * 4 3 2 36 36 H 1.08998 * 108.87880 * 296.92291 * 5 4 3 37 37 H 1.08995 * 109.95841 * 176.90292 * 5 4 3 38 38 H 1.08999 * 109.56067 * 185.48350 * 8 6 5 39 39 H 1.08996 * 109.56340 * 305.69940 * 8 6 5 40 40 H 1.08998 * 109.47566 * 300.00165 * 13 10 9 41 41 H 1.09002 * 109.46816 * 60.00634 * 13 10 9 42 42 H 1.09008 * 109.47101 * 59.99435 * 15 14 13 43 43 H 1.08999 * 109.47561 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47299 * 300.00135 * 15 14 13 45 45 H 1.09005 * 109.47090 * 59.99483 * 16 14 13 46 46 H 1.08992 * 109.47433 * 179.97438 * 16 14 13 47 47 H 1.08998 * 109.46568 * 299.99926 * 16 14 13 48 48 H 0.97006 * 119.99745 * 179.97438 * 20 19 17 49 49 H 1.09004 * 109.59244 * 65.92427 * 25 9 8 50 50 H 1.09003 * 109.59666 * 186.22504 * 25 9 8 51 51 H 1.09007 * 109.13696 * 294.52918 * 26 25 9 52 52 H 1.08998 * 109.82214 * 174.49122 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3711 0.0000 4 6 3.5181 1.3375 -0.1462 5 6 4.1281 0.5229 0.9991 6 6 3.5168 -0.8804 1.0056 7 1 3.7630 -1.3881 0.0731 8 6 4.0770 -1.6799 2.1842 9 7 3.6233 -1.0625 3.4377 10 16 4.7109 -0.6320 4.6098 11 8 3.9615 -0.6754 5.8163 12 8 5.8142 -1.5029 4.4010 13 6 5.1628 1.0769 4.2023 14 6 6.1762 1.5942 5.2253 15 6 5.5571 1.5500 6.6238 16 6 7.4275 0.7144 5.1936 17 6 6.5521 3.0137 4.8865 18 1 6.1120 3.4985 4.0276 19 6 7.4579 3.6935 5.6729 20 7 7.9935 3.1032 6.7190 21 14 7.9234 5.4531 5.2532 22 1 7.1855 5.8841 4.0386 23 1 7.5697 6.3429 6.3884 24 1 9.3844 5.5316 4.9993 25 6 2.1843 -0.8351 3.6301 26 6 1.6403 -0.0409 2.4390 27 6 1.9959 -0.7667 1.1385 28 1 1.5542 -1.7632 1.1437 29 1 -0.3632 0.4512 -0.9234 30 1 -0.3633 -1.0252 0.0708 31 1 -0.3633 0.5740 0.8523 32 1 1.5630 1.9256 -0.8329 33 1 1.7316 1.8610 0.9373 34 1 3.7822 0.8659 -1.0927 35 1 3.9080 2.3551 -0.1252 36 1 3.9072 1.0212 1.9430 37 1 5.2079 0.4496 0.8695 38 1 3.7169 -2.7073 2.1322 39 1 5.1662 -1.6726 2.1453 40 1 5.6043 1.1084 3.2063 41 1 4.2713 1.7036 4.2246 42 1 5.2854 0.5231 6.8686 43 1 6.2791 1.9182 7.3526 44 1 4.6656 2.1769 6.6465 45 1 7.8686 0.7458 4.1972 46 1 8.1496 1.0831 5.9220 47 1 7.1559 -0.3124 5.4384 48 1 8.6311 3.5813 7.2721 49 1 1.6676 -1.7931 3.6892 50 1 2.0226 -0.2752 4.5512 51 1 2.0905 0.9519 2.4359 52 1 0.5572 0.0510 2.5197 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332698166.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:14 Heat of formation + Delta-G solvation = -68.388823 kcal Electronic energy + Delta-G solvation = -31686.277890 eV Core-core repulsion = 27812.646889 eV Total energy + Delta-G solvation = -3873.631001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -40.53320 -36.63358 -36.50900 -36.27014 -35.29401 -33.75442 -31.68051 -31.16418 -30.72016 -26.96075 -26.55270 -25.72992 -25.25035 -25.09670 -23.46461 -22.49349 -21.52193 -19.49223 -19.01089 -17.84592 -17.43336 -16.16501 -16.01873 -15.94633 -15.52948 -15.28279 -15.04930 -14.73157 -14.54207 -14.18904 -14.04187 -13.41215 -13.25595 -13.09915 -12.93605 -12.87336 -12.65143 -12.51926 -12.47147 -12.21589 -11.99473 -11.79694 -11.53961 -11.33048 -11.21367 -11.09577 -11.07562 -10.94080 -10.90653 -10.71903 -10.60244 -10.50561 -10.35659 -10.29038 -10.15273 -10.06232 -9.66476 -9.56937 -8.91154 -8.60861 -8.42101 -8.41502 -6.04638 -4.16422 0.82642 3.08079 3.23515 3.32166 3.34388 3.71737 4.32246 4.40137 4.42810 4.54549 4.67194 4.72189 4.88993 4.92257 5.00027 5.09954 5.10895 5.19133 5.20965 5.30903 5.37958 5.42187 5.54959 5.59593 5.61701 5.64403 5.66635 5.68990 5.73506 5.76561 5.84430 5.90684 5.97899 6.04817 6.07281 6.26596 6.35210 6.40982 6.69121 6.71547 6.78472 6.89564 6.90034 6.90355 7.03066 7.30100 7.49074 7.66749 7.96656 8.08536 8.31897 8.82241 9.49041 10.96714 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013521 B = 0.004233 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2070.310536 B = 6613.101984 C = 7783.723309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.536 5.536 3 C 0.049 3.951 4 C -0.114 4.114 5 C -0.130 4.130 6 C -0.091 4.091 7 H 0.088 0.912 8 C 0.127 3.873 9 N -1.007 6.007 10 S 2.592 3.408 11 O -0.963 6.963 12 O -0.961 6.961 13 C -0.583 4.583 14 C 0.083 3.917 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.499 4.499 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.883 5.883 21 Si 0.894 3.106 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.128 3.872 26 C -0.174 4.174 27 C 0.094 3.906 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.028 0.972 32 H 0.071 0.929 33 H 0.040 0.960 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.035 0.965 45 H 0.036 0.964 46 H 0.095 0.905 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.067 0.933 50 H 0.091 0.909 51 H 0.077 0.923 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.265 -6.607 -12.921 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.259 5.259 3 C -0.078 4.078 4 C -0.152 4.152 5 C -0.167 4.167 6 C -0.112 4.112 7 H 0.107 0.893 8 C 0.000 4.000 9 N -0.842 5.842 10 S 2.691 3.309 11 O -0.954 6.954 12 O -0.952 6.952 13 C -0.716 4.716 14 C 0.080 3.920 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.539 4.539 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.722 3.278 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.002 3.998 26 C -0.214 4.214 27 C -0.015 4.015 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.133 0.867 42 H 0.045 0.955 43 H 0.113 0.887 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.045 0.955 48 H 0.072 0.928 49 H 0.085 0.915 50 H 0.109 0.891 51 H 0.095 0.905 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.727 -7.414 -12.520 19.331 hybrid contribution -0.195 2.042 0.052 2.052 sum -12.922 -5.372 -12.468 18.743 Atomic orbital electron populations 1.22363 0.87687 1.01790 1.00718 1.62284 1.07320 1.14053 1.42229 1.22143 0.95892 0.89186 1.00602 1.21547 0.94047 1.00318 0.99309 1.21851 1.00238 0.95120 0.99534 1.21500 0.94047 0.96859 0.98770 0.89332 1.21368 1.00297 0.96106 0.82183 1.58009 1.17349 1.76175 1.32702 1.05761 0.73188 0.78556 0.73399 1.93529 1.71015 1.87729 1.43088 1.93534 1.52598 1.63762 1.85289 1.30640 1.10156 1.20041 1.10754 1.17924 0.88858 0.96357 0.88815 1.22270 1.00813 0.98495 1.00506 1.22268 1.01397 0.96165 1.02240 1.20962 1.24844 0.96089 1.11972 0.92313 1.24936 0.95811 0.98072 0.94913 1.69815 1.29548 1.36653 1.16148 0.86500 0.78301 0.84640 0.78320 1.19869 1.20977 1.20936 1.21208 0.80266 1.00209 0.98109 1.22688 1.01083 1.01221 0.96440 1.21686 0.95145 0.97136 0.87492 0.89883 0.91593 0.91521 0.95380 0.91089 0.94197 0.91356 0.91247 0.91138 0.91124 0.91239 0.88762 0.86313 0.86704 0.95468 0.88651 0.94562 0.94494 0.88656 0.95450 0.92812 0.91483 0.89107 0.90490 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.16 60.07 0.55 0.73 16 2 N -0.54 -5.05 4.86 -234.68 -1.14 -6.19 16 3 C 0.05 0.47 5.16 -3.84 -0.02 0.45 16 4 C -0.11 -1.15 6.09 -26.62 -0.16 -1.31 16 5 C -0.13 -1.47 4.43 -26.59 -0.12 -1.59 16 6 C -0.09 -0.95 2.61 -90.52 -0.24 -1.18 16 7 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 8 C 0.13 1.50 5.70 -3.80 -0.02 1.48 16 9 N -1.01 -14.03 2.67 -113.63 -0.30 -14.33 16 10 S 2.59 48.32 4.45 -107.50 -0.48 47.84 16 11 O -0.96 -20.26 14.35 -57.54 -0.83 -21.08 16 12 O -0.96 -20.11 14.35 -57.54 -0.83 -20.94 16 13 C -0.58 -11.25 4.08 37.16 0.15 -11.10 16 14 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 15 C -0.16 -4.01 7.78 37.16 0.29 -3.72 16 16 C -0.16 -4.00 7.77 37.16 0.29 -3.71 16 17 C -0.50 -12.94 8.01 -34.44 -0.28 -13.22 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.70 5.15 -17.82 -0.09 1.61 16 20 N -0.88 -24.00 9.35 55.43 0.52 -23.48 16 21 Si 0.89 20.51 29.54 -169.99 -5.02 15.49 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.13 1.52 6.30 -3.72 -0.02 1.50 16 26 C -0.17 -1.76 4.32 -26.60 -0.11 -1.88 16 27 C 0.09 0.91 2.21 -67.54 -0.15 0.76 16 28 H 0.08 0.76 8.03 -51.92 -0.42 0.35 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.47 8.02 -51.93 -0.42 0.05 16 31 H 0.03 0.21 6.84 -51.93 -0.36 -0.14 16 32 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 33 H 0.04 0.40 6.13 -51.93 -0.32 0.09 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.88 4.41 -51.93 -0.23 0.65 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.19 7.11 -51.93 -0.37 0.82 16 40 H 0.12 2.10 7.10 -51.92 -0.37 1.73 16 41 H 0.11 2.03 8.14 -51.92 -0.42 1.61 16 42 H 0.03 0.64 5.47 -51.92 -0.28 0.35 16 43 H 0.09 2.53 6.07 -51.93 -0.32 2.21 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 47 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 48 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.09 1.15 7.10 -51.93 -0.37 0.78 16 51 H 0.08 0.86 4.73 -51.93 -0.25 0.61 16 52 H 0.07 0.64 6.70 -51.93 -0.35 0.29 16 LS Contribution 375.02 15.07 5.65 5.65 Total: -1.00 -30.54 375.02 -11.26 -41.81 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.82 Total: 4.50 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -0.01 Total: -29.27 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: -0.93 Total: -44.00 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.65 Total: -42.02 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 48.32 SS G_CDS: -0.48 Total: 47.84 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.54 -11.26 -41.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332698166.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.582 kcal (2) G-P(sol) polarization free energy of solvation -30.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds