Wall clock time and date at job start Wed Apr 1 2020 05:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46120 * 111.04727 * 2 1 4 4 C 1.53038 * 109.59553 * 174.06048 * 3 2 1 5 5 C 1.53118 * 109.25070 * 59.04675 * 4 3 2 6 6 C 1.53102 * 109.19224 * 302.31115 * 5 4 3 7 7 H 1.09004 * 109.56929 * 297.51264 * 6 5 4 8 8 C 1.53226 * 109.55651 * 177.28566 * 6 5 4 9 9 N 1.46918 * 108.76761 * 185.53548 * 8 6 5 10 10 S 1.65603 * 120.62972 * 233.65366 * 9 8 6 11 11 O 1.42112 * 104.27342 * 206.07132 * 10 9 8 12 12 O 1.42099 * 104.27872 * 333.92270 * 10 9 8 13 13 C 1.81397 * 104.45058 * 89.99954 * 10 9 8 14 14 C 1.52998 * 109.46864 * 179.97438 * 13 10 9 15 15 C 1.52993 * 109.47555 * 299.99723 * 14 13 10 16 16 C 1.53003 * 109.47132 * 60.00359 * 14 13 10 17 17 C 1.50706 * 109.46931 * 179.97438 * 14 13 10 18 18 H 1.07999 * 120.00087 * 359.97438 * 17 14 13 19 19 C 1.37874 * 119.99980 * 180.02562 * 17 14 13 20 20 N 1.31514 * 120.00069 * 0.02562 * 19 17 14 21 21 Si 1.86800 * 120.00089 * 180.02562 * 19 17 14 22 22 H 1.48492 * 109.47149 * 89.99658 * 21 19 17 23 23 H 1.48505 * 109.47149 * 210.00266 * 21 19 17 24 24 H 1.48500 * 109.46943 * 329.99977 * 21 19 17 25 25 C 1.46930 * 118.73497 * 53.63031 * 9 8 6 26 26 C 1.53191 * 108.77826 * 306.42366 * 25 9 8 27 27 C 1.46842 * 111.00239 * 235.15938 * 2 1 3 28 28 H 1.09002 * 109.47108 * 65.75492 * 27 2 1 29 29 H 1.09001 * 109.47636 * 184.83924 * 1 2 3 30 30 H 1.08996 * 109.47480 * 304.83740 * 1 2 3 31 31 H 1.09009 * 109.47305 * 64.84260 * 1 2 3 32 32 H 1.08998 * 109.56683 * 53.92656 * 3 2 1 33 33 H 1.08994 * 109.25853 * 294.00241 * 3 2 1 34 34 H 1.08998 * 109.51036 * 299.11807 * 4 3 2 35 35 H 1.08995 * 109.51177 * 178.98147 * 4 3 2 36 36 H 1.09001 * 109.51736 * 182.38881 * 5 4 3 37 37 H 1.08999 * 109.51515 * 62.22325 * 5 4 3 38 38 H 1.09008 * 109.58614 * 305.31740 * 8 6 5 39 39 H 1.09000 * 109.58983 * 65.60062 * 8 6 5 40 40 H 1.08999 * 109.47061 * 299.99648 * 13 10 9 41 41 H 1.08999 * 109.47284 * 60.00057 * 13 10 9 42 42 H 1.09000 * 109.46724 * 60.00413 * 15 14 13 43 43 H 1.09002 * 109.47375 * 179.97438 * 15 14 13 44 44 H 1.08999 * 109.47459 * 300.00029 * 15 14 13 45 45 H 1.08999 * 109.47366 * 59.99557 * 16 14 13 46 46 H 1.09002 * 109.47356 * 179.97438 * 16 14 13 47 47 H 1.08999 * 109.46613 * 299.99575 * 16 14 13 48 48 H 0.97010 * 120.00174 * 179.97438 * 20 19 17 49 49 H 1.08995 * 109.58815 * 66.21539 * 25 9 8 50 50 H 1.09000 * 109.58306 * 186.49958 * 25 9 8 51 51 H 1.09001 * 109.49563 * 294.70337 * 26 25 9 52 52 H 1.08999 * 109.49533 * 174.60483 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9937 1.3637 0.0000 4 6 3.5164 1.3277 0.1492 5 6 4.1183 0.5270 -1.0088 6 6 3.5187 -0.8817 -1.0119 7 1 3.7838 -1.3934 -0.0866 8 6 4.0645 -1.6689 -2.2079 9 7 3.3801 -2.9674 -2.2712 10 16 4.2479 -4.3770 -2.3197 11 8 3.3855 -5.2969 -2.9751 12 8 5.4925 -4.0027 -2.8943 13 6 4.4631 -4.8362 -0.5781 14 6 5.2596 -6.1395 -0.4890 15 6 4.5029 -7.2506 -1.2196 16 6 6.6312 -5.9444 -1.1382 17 6 5.4389 -6.5208 0.9579 18 1 5.0265 -5.8957 1.7362 19 6 6.1304 -7.6669 1.2882 20 7 6.6340 -8.4272 0.3406 21 14 6.3522 -8.1398 3.0817 22 1 5.2187 -8.9976 3.5112 23 1 7.6262 -8.8855 3.2432 24 1 6.3879 -6.9122 3.9166 25 6 1.9111 -2.9915 -2.2901 26 6 1.3893 -2.1886 -1.0943 27 6 1.9952 -0.7832 -1.1251 28 1 1.7315 -0.2943 -2.0630 29 1 -0.3634 -1.0240 0.0867 30 1 -0.3634 0.5870 0.8434 31 1 -0.3634 0.4369 -0.9302 32 1 1.5604 1.9216 0.8301 33 1 1.7322 1.8495 -0.9400 34 1 3.7784 0.8531 1.0948 35 1 3.9081 2.3447 0.1309 36 1 5.1992 0.4626 -0.8840 37 1 3.8888 1.0225 -1.9522 38 1 3.8787 -1.1127 -3.1268 39 1 5.1364 -1.8239 -2.0849 40 1 5.0019 -4.0445 -0.0575 41 1 3.4860 -4.9757 -0.1156 42 1 4.3736 -6.9747 -2.2661 43 1 5.0706 -8.1790 -1.1565 44 1 3.5258 -7.3897 -0.7570 45 1 7.1703 -5.1528 -0.6177 46 1 7.1988 -6.8728 -1.0744 47 1 6.5018 -5.6684 -2.1847 48 1 7.1208 -9.2335 0.5730 49 1 1.5502 -2.5440 -3.2161 50 1 1.5617 -4.0217 -2.2215 51 1 1.6751 -2.6878 -0.1684 52 1 0.3031 -2.1179 -1.1497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332698168.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:20 Heat of formation + Delta-G solvation = -72.478125 kcal Electronic energy + Delta-G solvation = -30996.881248 eV Core-core repulsion = 27123.072921 eV Total energy + Delta-G solvation = -3873.808327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.19623 -36.70734 -36.60377 -36.24103 -35.26679 -34.26926 -31.67143 -31.46990 -30.34994 -26.87383 -26.65685 -25.70254 -25.22007 -24.97703 -23.84392 -21.82517 -20.91776 -19.98553 -19.31612 -18.38522 -17.39527 -16.07674 -16.00158 -15.73779 -15.52840 -15.41576 -14.87349 -14.71715 -14.68600 -14.27490 -14.15519 -13.45160 -13.30827 -13.11713 -12.96984 -12.88495 -12.62340 -12.48921 -12.36930 -12.14512 -11.95073 -11.69938 -11.52059 -11.42028 -11.21112 -11.18226 -11.05642 -11.03795 -10.90618 -10.86389 -10.67504 -10.44355 -10.31299 -10.26389 -10.17881 -10.07701 -9.63712 -9.54082 -8.90477 -8.59714 -8.50681 -8.38566 -6.01710 -4.13494 0.85163 3.08833 3.27113 3.34322 3.36704 3.62908 4.34958 4.40625 4.44027 4.48078 4.60887 4.70603 4.82074 4.91849 4.98121 5.08153 5.13036 5.19921 5.22864 5.23873 5.30200 5.38812 5.44934 5.52371 5.60077 5.61233 5.65362 5.67497 5.70785 5.73197 5.78282 5.81388 5.92605 5.97772 6.09874 6.25596 6.29798 6.41680 6.69871 6.72529 6.81316 6.88079 6.92148 6.93272 7.05662 7.32967 7.51884 7.69563 7.99368 8.11382 8.34869 8.85080 9.51869 10.99586 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013659 B = 0.003607 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2049.489678 B = 7760.306185 C = 8512.647959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.542 5.542 3 C 0.059 3.941 4 C -0.117 4.117 5 C -0.117 4.117 6 C -0.097 4.097 7 H 0.088 0.912 8 C 0.128 3.872 9 N -1.008 6.008 10 S 2.592 3.408 11 O -0.963 6.963 12 O -0.962 6.962 13 C -0.580 4.580 14 C 0.082 3.918 15 C -0.163 4.163 16 C -0.163 4.163 17 C -0.500 4.500 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.275 1.275 25 C 0.124 3.876 26 C -0.134 4.134 27 C 0.098 3.902 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.095 0.905 47 H 0.027 0.973 48 H 0.262 0.738 49 H 0.066 0.934 50 H 0.095 0.905 51 H 0.080 0.920 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 18.743 -2.503 21.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.069 4.069 4 C -0.155 4.155 5 C -0.155 4.155 6 C -0.118 4.118 7 H 0.106 0.894 8 C 0.002 3.998 9 N -0.843 5.843 10 S 2.691 3.309 11 O -0.953 6.953 12 O -0.953 6.953 13 C -0.713 4.713 14 C 0.079 3.921 15 C -0.221 4.221 16 C -0.221 4.221 17 C -0.540 4.540 18 H 0.077 0.923 19 C -0.137 4.137 20 N -0.522 5.522 21 Si 0.723 3.277 22 H -0.207 1.207 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.002 4.002 26 C -0.173 4.173 27 C -0.010 4.010 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.041 0.959 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.046 0.954 48 H 0.072 0.928 49 H 0.084 0.916 50 H 0.113 0.887 51 H 0.099 0.901 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.793 17.949 -2.952 20.659 hybrid contribution -0.363 0.354 1.021 1.140 sum -10.156 18.303 -1.931 21.020 Atomic orbital electron populations 1.22410 0.87389 1.02634 1.00116 1.61483 1.07419 1.13373 1.44363 1.21932 0.95816 0.89063 1.00093 1.21579 0.94252 1.00044 0.99587 1.21598 1.00540 0.94797 0.98595 1.21646 0.94105 0.96105 0.99935 0.89357 1.21397 0.97257 0.83539 0.97623 1.58031 1.14923 1.21098 1.90290 1.05771 0.73468 0.72276 0.79359 1.93531 1.66687 1.61668 1.73414 1.93529 1.43455 1.81806 1.76494 1.30559 1.09808 1.10261 1.20717 1.17932 0.90521 0.85782 0.97828 1.22267 0.99753 1.03727 0.96324 1.22269 0.99738 1.03503 0.96561 1.20943 1.34937 1.07978 0.90096 0.92319 1.24934 0.95239 0.96176 0.97381 1.69805 1.36279 1.14606 1.31551 0.86545 0.77576 0.78576 0.85005 1.20655 1.21147 1.19950 1.21342 0.79204 1.01790 0.97884 1.22137 1.00229 0.95062 0.99914 1.21528 0.94558 0.93633 0.91308 0.94115 0.90706 0.91586 0.95903 0.90893 0.95338 0.90825 0.91488 0.91051 0.92078 0.91576 0.88717 0.86491 0.86495 0.95431 0.88678 0.94510 0.94507 0.88664 0.95437 0.92776 0.91605 0.88709 0.90114 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.05 60.06 0.54 0.72 16 2 N -0.54 -5.23 4.70 -235.47 -1.11 -6.34 16 3 C 0.06 0.49 5.45 -4.23 -0.02 0.47 16 4 C -0.12 -0.96 6.10 -26.65 -0.16 -1.12 16 5 C -0.12 -1.04 5.29 -26.62 -0.14 -1.18 16 6 C -0.10 -1.05 2.31 -90.41 -0.21 -1.26 16 7 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.13 1.57 5.60 -3.70 -0.02 1.55 16 9 N -1.01 -14.37 3.22 -113.50 -0.37 -14.74 16 10 S 2.59 48.66 4.45 -107.50 -0.48 48.18 16 11 O -0.96 -20.22 14.34 -57.54 -0.83 -21.05 16 12 O -0.96 -20.23 14.35 -57.54 -0.83 -21.06 16 13 C -0.58 -11.42 5.12 37.16 0.19 -11.23 16 14 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 15 C -0.16 -4.04 7.78 37.15 0.29 -3.75 16 16 C -0.16 -4.04 7.77 37.16 0.29 -3.75 16 17 C -0.50 -13.17 8.01 -34.44 -0.28 -13.45 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.72 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 21 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C 0.12 1.49 6.32 -3.71 -0.02 1.47 16 26 C -0.13 -1.39 4.98 -26.59 -0.13 -1.52 16 27 C 0.10 0.99 1.70 -67.66 -0.11 0.88 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.58 6.18 -51.93 -0.32 0.26 16 30 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 31 H 0.02 0.17 8.14 -51.92 -0.42 -0.25 16 32 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 33 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.09 1.22 7.10 -51.93 -0.37 0.85 16 40 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 41 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 42 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 44 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 47 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 48 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.09 1.19 7.10 -51.93 -0.37 0.82 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 52 H 0.08 0.65 6.24 -51.93 -0.32 0.33 16 LS Contribution 386.41 15.07 5.82 5.82 Total: -1.00 -31.08 386.41 -11.54 -42.62 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -9.30 Total: 3.18 kcal Atomic # 6 Polarization: -28.67 SS G_CDS: 0.04 Total: -28.63 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: -0.95 Total: -44.78 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -1.65 Total: -42.10 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Atomic # 16 Polarization: 48.66 SS G_CDS: -0.48 Total: 48.18 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.08 -11.54 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332698168.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.858 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds