Wall clock time and date at job start Wed Apr 1 2020 03:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46925 * 2 1 4 4 C 1.52998 * 109.47365 * 120.00337 * 2 1 3 5 5 N 1.46901 * 109.46914 * 240.00424 * 2 1 3 6 6 C 1.46852 * 110.99815 * 295.78858 * 5 2 1 7 7 C 1.53035 * 109.52292 * 185.84196 * 6 5 2 8 8 C 1.53116 * 109.27901 * 300.81666 * 7 6 5 9 9 N 1.46502 * 109.52580 * 177.56074 * 8 7 6 10 10 S 1.65595 * 119.99774 * 95.31903 * 9 8 7 11 11 O 1.42105 * 104.27449 * 181.07241 * 10 9 8 12 12 O 1.42101 * 104.27837 * 308.92732 * 10 9 8 13 13 C 1.81395 * 104.45254 * 65.00432 * 10 9 8 14 14 C 1.52997 * 109.47473 * 173.77586 * 13 10 9 15 15 C 1.50701 * 115.55201 * 65.26702 * 14 13 10 16 16 H 1.08004 * 119.99944 * 268.55387 * 15 14 13 17 17 C 1.37871 * 120.00127 * 88.54824 * 15 14 13 18 18 N 1.31518 * 120.00341 * 174.70298 * 17 15 14 19 19 Si 1.86801 * 119.99998 * 354.70409 * 17 15 14 20 20 H 1.48502 * 109.47101 * 92.55207 * 19 17 15 21 21 H 1.48501 * 109.47043 * 212.55108 * 19 17 15 22 22 H 1.48497 * 109.47172 * 332.55206 * 19 17 15 23 23 C 1.52995 * 117.49772 * 279.59892 * 14 13 10 24 24 C 1.52997 * 117.50155 * 210.93970 * 14 13 10 25 25 C 1.53123 * 109.15775 * 57.65553 * 8 7 6 26 26 C 1.46845 * 111.00226 * 59.99812 * 5 2 1 27 27 H 1.08995 * 109.47405 * 59.99740 * 1 2 3 28 28 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 29 29 H 1.09010 * 109.47012 * 299.99976 * 1 2 3 30 30 H 1.08994 * 109.47310 * 60.00535 * 3 2 1 31 31 H 1.09001 * 109.46707 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.46894 * 299.99794 * 3 2 1 33 33 H 1.08995 * 109.47236 * 59.99811 * 4 2 1 34 34 H 1.08993 * 109.47094 * 180.02562 * 4 2 1 35 35 H 1.09010 * 109.46800 * 299.99816 * 4 2 1 36 36 H 1.09008 * 109.45963 * 305.85648 * 6 5 2 37 37 H 1.08997 * 109.46164 * 65.82377 * 6 5 2 38 38 H 1.09003 * 109.50156 * 180.87648 * 7 6 5 39 39 H 1.08994 * 109.50220 * 60.76080 * 7 6 5 40 40 H 1.09005 * 109.52430 * 297.75669 * 8 7 6 41 41 H 0.97001 * 119.99830 * 275.32250 * 9 8 7 42 42 H 1.09005 * 109.46705 * 293.77726 * 13 10 9 43 43 H 1.09004 * 109.47523 * 53.76976 * 13 10 9 44 44 H 0.96996 * 120.00292 * 180.02562 * 18 17 15 45 45 H 1.09001 * 117.49971 * 359.97438 * 23 14 13 46 46 H 1.09006 * 117.49875 * 145.02127 * 23 14 13 47 47 H 1.08998 * 117.49748 * 214.98057 * 24 14 13 48 48 H 1.09005 * 117.49464 * 359.97347 * 24 14 13 49 49 H 1.09005 * 109.50049 * 182.40373 * 25 8 7 50 50 H 1.09000 * 109.50191 * 62.28730 * 25 8 7 51 51 H 1.09000 * 109.45938 * 294.17821 * 26 5 2 52 52 H 1.08999 * 109.46342 * 54.14436 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0196 -0.6924 -1.1995 6 6 1.6327 -2.1090 -1.1842 7 6 2.2799 -2.8287 -2.3695 8 6 1.8214 -2.1693 -3.6731 9 7 2.4831 -2.8167 -4.8085 10 16 1.7177 -4.0353 -5.6280 11 8 2.6517 -4.4281 -6.6243 12 8 1.3085 -4.9388 -4.6104 13 6 0.2769 -3.2355 -6.3863 14 6 -0.4342 -4.2309 -7.3051 15 6 -1.0537 -5.4210 -6.6187 16 1 -0.4846 -6.3308 -6.4969 17 6 -2.3469 -5.3483 -6.1462 18 7 -2.9236 -6.4170 -5.6414 19 14 -3.2799 -3.7318 -6.2231 20 1 -4.0592 -3.6697 -7.4857 21 1 -4.2052 -3.6388 -5.0653 22 1 -2.3172 -2.6021 -6.1795 23 6 0.1527 -4.4472 -8.7013 24 6 -1.1547 -3.6693 -8.5324 25 6 2.1934 -0.6842 -3.6429 26 6 1.5487 -0.0265 -2.4207 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 -1.7489 1.2491 34 1 3.1300 -0.7209 1.2493 35 1 1.6767 -0.2074 2.1392 36 1 1.9683 -2.5671 -0.2538 37 1 0.5482 -2.1900 -1.2582 38 1 1.9800 -3.8767 -2.3667 39 1 3.3647 -2.7599 -2.2887 40 1 0.7408 -2.2721 -3.7729 41 1 3.3696 -2.5317 -5.0802 42 1 -0.4093 -2.9074 -5.6055 43 1 0.6040 -2.3737 -6.9681 44 1 -3.8336 -6.3660 -5.3093 45 1 1.0452 -3.8800 -8.9655 46 1 0.0904 -5.4502 -9.1236 47 1 -2.0765 -4.1607 -8.8435 48 1 -1.1224 -2.5904 -8.6850 49 1 1.8317 -0.2000 -4.5500 50 1 3.2769 -0.5817 -3.5822 51 1 0.4647 -0.1174 -2.4888 52 1 1.8234 1.0278 -2.3883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333147825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:41:56 Heat of formation + Delta-G solvation = -72.988405 kcal Electronic energy + Delta-G solvation = -30426.409366 eV Core-core repulsion = 26552.578912 eV Total energy + Delta-G solvation = -3873.830454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.192 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.87066 -38.86689 -38.10101 -37.63836 -36.79264 -34.31316 -34.15713 -32.05890 -30.22897 -30.11307 -28.22970 -28.16165 -27.62837 -24.60274 -23.72888 -23.36387 -21.58579 -21.17976 -20.25700 -19.70342 -18.60139 -18.37520 -17.71081 -17.01964 -16.90109 -16.73447 -15.87282 -15.82726 -15.53108 -15.37983 -15.13315 -14.91559 -14.85262 -14.72071 -14.57635 -14.16157 -13.97014 -13.51927 -13.46401 -13.24006 -12.97785 -12.92720 -12.82600 -12.72028 -12.69483 -12.59423 -12.55954 -12.40494 -12.25016 -12.13553 -12.05641 -11.88117 -11.80956 -11.76432 -11.70416 -11.42646 -11.20371 -10.98434 -10.74426 -10.46330 -10.10063 -9.17153 -8.33849 -6.47042 -0.57876 1.33216 1.34013 1.47446 1.99079 2.33458 2.85865 2.91498 2.98982 3.14444 3.39800 3.66785 3.78618 3.80989 3.96771 4.00569 4.07785 4.12302 4.26374 4.28996 4.31554 4.34297 4.37586 4.41526 4.50306 4.60107 4.65654 4.73812 4.77335 4.84208 4.85480 4.86359 4.93803 5.00557 5.01457 5.02336 5.06371 5.08014 5.17298 5.19825 5.25621 5.27773 5.41594 5.43671 5.43830 5.50567 5.60299 6.17376 6.18403 6.21708 6.28668 6.64420 7.25570 8.82578 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013457 B = 0.003665 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.142389 B = 7638.850256 C = 8487.082842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.098 3.902 3 C -0.134 4.134 4 C -0.141 4.141 5 N -0.527 5.527 6 C 0.054 3.946 7 C -0.135 4.135 8 C 0.145 3.855 9 N -1.105 6.105 10 S 2.617 3.383 11 O -0.995 6.995 12 O -0.993 6.993 13 C -0.572 4.572 14 C -0.032 4.032 15 C -0.514 4.514 16 H 0.027 0.973 17 C 0.027 3.973 18 N -0.942 5.942 19 Si 0.932 3.068 20 H -0.262 1.262 21 H -0.295 1.295 22 H -0.214 1.214 23 C -0.174 4.174 24 C -0.168 4.168 25 C -0.113 4.113 26 C 0.047 3.953 27 H 0.058 0.942 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.425 0.575 42 H 0.129 0.871 43 H 0.159 0.841 44 H 0.268 0.732 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.119 0.881 49 H 0.093 0.907 50 H 0.088 0.912 51 H 0.034 0.966 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.784 22.316 9.052 25.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.009 3.991 3 C -0.192 4.192 4 C -0.199 4.199 5 N -0.252 5.252 6 C -0.075 4.075 7 C -0.174 4.174 8 C 0.038 3.962 9 N -0.866 5.866 10 S 2.714 3.286 11 O -0.985 6.985 12 O -0.982 6.982 13 C -0.705 4.705 14 C -0.035 4.035 15 C -0.551 4.551 16 H 0.045 0.955 17 C -0.172 4.172 18 N -0.580 5.580 19 Si 0.754 3.246 20 H -0.187 1.187 21 H -0.222 1.222 22 H -0.136 1.136 23 C -0.211 4.211 24 C -0.207 4.207 25 C -0.153 4.153 26 C -0.081 4.081 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.046 0.954 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.261 0.739 42 H 0.147 0.853 43 H 0.177 0.823 44 H 0.077 0.923 45 H 0.131 0.869 46 H 0.097 0.903 47 H 0.097 0.903 48 H 0.137 0.863 49 H 0.111 0.889 50 H 0.107 0.893 51 H 0.053 0.947 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.295 21.272 9.170 25.349 hybrid contribution -1.802 -0.138 -0.047 1.808 sum 8.493 21.134 9.123 24.536 Atomic orbital electron populations 1.22511 0.97143 1.01638 1.02829 1.21167 0.92349 0.95348 0.90282 1.21862 1.01725 0.93248 1.02356 1.21931 1.01763 0.99964 0.96225 1.62252 1.59517 1.01303 1.02108 1.22102 0.97395 0.89180 0.98783 1.22100 1.02279 0.99070 0.93997 1.20986 0.95918 0.94415 0.84913 1.55516 1.30139 1.57160 1.43743 1.04503 0.75776 0.74478 0.73843 1.93470 1.61289 1.81693 1.62055 1.93527 1.84231 1.62393 1.58062 1.30164 1.17895 1.10593 1.11800 1.18762 1.02401 0.95275 0.87060 1.20460 0.98996 0.97293 1.38355 0.95453 1.25939 0.98108 1.00138 0.93030 1.70070 1.14484 1.31458 1.41952 0.85993 0.79284 0.81382 0.77924 1.18673 1.22197 1.13644 1.23108 0.97235 1.01444 0.99358 1.23097 0.95846 1.00036 1.01672 1.21910 1.03042 0.91629 0.98672 1.22260 0.97385 0.99650 0.88852 0.92307 0.93679 0.91047 0.91290 0.91899 0.92040 0.93122 0.91878 0.91114 0.89513 0.95377 0.92701 0.89948 0.91146 0.73889 0.85311 0.82300 0.92282 0.86878 0.90258 0.90259 0.86268 0.88882 0.89339 0.94741 0.88018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.87 7.78 71.98 0.56 -2.31 16 2 C 0.10 1.46 0.71 3.53 0.00 1.47 16 3 C -0.13 -1.56 8.25 71.98 0.59 -0.97 16 4 C -0.14 -2.03 8.12 71.98 0.58 -1.45 16 5 N -0.53 -9.39 4.47 -846.83 -3.79 -13.18 16 6 C 0.05 1.19 4.67 86.32 0.40 1.60 16 7 C -0.13 -3.47 5.70 30.64 0.17 -3.30 16 8 C 0.14 3.49 2.62 45.07 0.12 3.61 16 9 N -1.11 -28.97 5.37 -169.05 -0.91 -29.88 16 10 S 2.62 100.58 5.12 -56.49 -0.29 100.29 16 11 O -0.99 -41.93 18.08 -127.65 -2.31 -44.24 16 12 O -0.99 -48.69 16.87 -127.65 -2.15 -50.85 16 13 C -0.57 -20.39 5.38 71.98 0.39 -20.00 16 14 C -0.03 -1.44 0.79 -52.93 -0.04 -1.48 16 15 C -0.51 -29.67 8.78 25.60 0.22 -29.45 16 16 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 17 C 0.03 1.56 5.47 84.65 0.46 2.02 16 18 N -0.94 -59.81 13.96 21.45 0.30 -59.51 16 19 Si 0.93 41.95 24.96 68.60 1.71 43.66 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 21 H -0.30 -13.42 7.11 99.48 0.71 -12.71 16 22 H -0.21 -8.09 5.68 99.48 0.57 -7.53 16 23 C -0.17 -6.83 9.96 30.62 0.30 -6.53 16 24 C -0.17 -6.30 7.67 30.62 0.23 -6.07 16 25 C -0.11 -1.85 5.63 30.65 0.17 -1.68 16 26 C 0.05 0.75 4.64 86.33 0.40 1.15 16 27 H 0.06 0.92 6.54 -2.39 -0.02 0.90 16 28 H 0.04 0.84 6.63 -2.39 -0.02 0.83 16 29 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.06 0.66 6.28 -2.39 -0.01 0.64 16 33 H 0.05 0.81 6.22 -2.39 -0.01 0.80 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.09 1.82 5.90 -2.38 -0.01 1.80 16 37 H 0.03 0.68 6.71 -2.39 -0.02 0.67 16 38 H 0.05 1.77 7.51 -2.39 -0.02 1.75 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 1.84 7.31 -2.38 -0.02 1.82 16 41 H 0.42 8.75 8.80 -96.74 -0.85 7.90 16 42 H 0.13 4.47 6.03 -2.39 -0.01 4.46 16 43 H 0.16 3.97 8.09 -2.39 -0.02 3.95 16 44 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 45 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 46 H 0.08 3.32 8.14 -2.38 -0.02 3.30 16 47 H 0.08 3.20 7.34 -2.39 -0.02 3.18 16 48 H 0.12 3.46 8.14 -2.38 -0.02 3.44 16 49 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 50 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.03 0.60 6.63 -2.39 -0.02 0.58 16 52 H 0.10 1.25 6.01 -2.39 -0.01 1.24 16 Total: -1.00 -78.64 396.82 -2.94 -81.58 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.09 Total: 35.51 kcal Atomic # 6 Polarization: -67.97 SS G_CDS: 4.58 Total: -63.38 kcal Atomic # 7 Polarization: -98.17 SS G_CDS: -4.40 Total: -102.57 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -4.46 Total: -95.09 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 1.71 Total: 43.66 kcal Atomic # 16 Polarization: 100.58 SS G_CDS: -0.29 Total: 100.29 kcal Total: -78.64 -2.94 -81.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333147825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.593 kcal (2) G-P(sol) polarization free energy of solvation -78.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds